Wall clock time and date at job start Mon Mar 30 2020 04:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99841 * 2 1 4 4 C 1.53008 * 109.46948 * 179.97438 * 3 2 1 5 5 N 1.46907 * 109.46623 * 61.30781 * 4 3 2 6 6 C 1.46897 * 110.99520 * 199.46445 * 5 4 3 7 7 C 1.50701 * 109.47082 * 162.03743 * 6 5 4 8 8 H 1.08002 * 119.99594 * 356.10196 * 7 6 5 9 9 C 1.37885 * 120.00288 * 176.10741 * 7 6 5 10 10 N 1.31511 * 119.99388 * 359.97438 * 9 7 6 11 11 Si 1.86791 * 120.00018 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47231 * 89.99804 * 11 9 7 13 13 H 1.48495 * 109.47082 * 209.99715 * 11 9 7 14 14 H 1.48503 * 109.47385 * 329.99712 * 11 9 7 15 15 C 1.46895 * 110.99971 * 75.51522 * 5 4 3 16 16 H 1.09008 * 110.53951 * 335.92443 * 15 5 4 17 17 C 1.54264 * 110.48523 * 213.31689 * 15 5 4 18 18 C 1.53873 * 106.59742 * 217.71255 * 17 15 5 19 19 C 1.54268 * 106.60017 * 359.97438 * 18 17 15 20 20 C 1.54888 * 104.19451 * 23.61207 * 19 18 17 21 21 H 1.09001 * 110.75742 * 80.37271 * 20 19 18 22 22 O 1.42897 * 110.75559 * 203.74486 * 20 19 18 23 23 H 1.09001 * 109.46991 * 59.99909 * 1 2 3 24 24 H 1.08999 * 109.47349 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46944 * 300.00411 * 1 2 3 26 26 H 1.08999 * 109.47219 * 59.99966 * 3 2 1 27 27 H 1.08995 * 109.47086 * 299.99259 * 3 2 1 28 28 H 1.09000 * 109.47063 * 301.31472 * 4 3 2 29 29 H 1.08997 * 109.47033 * 181.30738 * 4 3 2 30 30 H 1.09002 * 109.47723 * 282.03515 * 6 5 4 31 31 H 1.09004 * 109.47628 * 42.03898 * 6 5 4 32 32 H 0.97006 * 119.99438 * 180.02562 * 10 9 7 33 33 H 1.09007 * 110.03027 * 336.99060 * 17 15 5 34 34 H 1.08997 * 110.03533 * 98.42165 * 17 15 5 35 35 H 1.09000 * 110.03552 * 119.28289 * 18 17 15 36 36 H 1.09007 * 110.03074 * 240.70895 * 18 17 15 37 37 H 1.09002 * 110.48926 * 142.29243 * 19 18 17 38 38 H 1.09007 * 110.48306 * 264.80228 * 19 18 17 39 39 H 0.96704 * 114.00370 * 293.32741 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9715 0.4829 -1.2141 6 6 5.3275 -0.0581 -1.0513 7 6 5.5744 -1.1173 -2.0945 8 1 4.7807 -1.4085 -2.7666 9 6 6.8133 -1.7147 -2.1908 10 7 7.7798 -1.3597 -1.3726 11 14 7.1194 -3.0271 -3.4843 12 1 7.6061 -2.3875 -4.7329 13 1 8.1410 -3.9833 -2.9872 14 1 5.8543 -3.7539 -3.7611 15 6 3.8933 1.3632 -2.3874 16 1 3.1664 2.1583 -2.2212 17 6 3.5274 0.5521 -3.6475 18 6 4.3361 1.1559 -4.8091 19 6 5.1646 2.3133 -4.2144 20 6 5.2848 1.9611 -2.7109 21 1 6.0695 1.2221 -2.5488 22 8 5.5249 3.1356 -1.9332 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.8552 0.6237 0.8788 29 1 3.9788 2.1802 0.0241 30 1 6.0556 0.7445 -1.1692 31 1 5.4273 -0.4961 -0.0581 32 1 8.6515 -1.7798 -1.4406 33 1 3.7976 -0.4949 -3.5091 34 1 2.4601 0.6389 -3.8507 35 1 4.9986 0.4021 -5.2344 36 1 3.6611 1.5358 -5.5761 37 1 6.1509 2.3535 -4.6769 38 1 4.6439 3.2619 -4.3456 39 1 6.3837 3.5482 -2.0986 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226285458.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:23 Heat of formation + Delta-G solvation = -81.037486 kcal Electronic energy + Delta-G solvation = -19219.162303 eV Core-core repulsion = 16355.396855 eV Total energy + Delta-G solvation = -2863.765448 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.02141 -37.32476 -35.14629 -34.04314 -32.56022 -29.55362 -27.55873 -26.80159 -26.18901 -25.05702 -22.15561 -21.28234 -19.95268 -18.53676 -16.94789 -16.41318 -16.05264 -15.69327 -15.09459 -14.57635 -14.38564 -14.22316 -13.70290 -13.17962 -12.82707 -12.60919 -11.93752 -11.90078 -11.74852 -11.59309 -11.26043 -11.07538 -10.85259 -10.74742 -10.54093 -10.43413 -10.22350 -10.11806 -10.09326 -9.29675 -9.22433 -8.93320 -8.84869 -8.35860 -7.01079 -5.98323 -3.98432 3.32327 3.39797 3.44219 4.25470 4.44843 4.79308 4.91311 5.28558 5.36102 5.41050 5.43775 5.54571 5.65170 5.69415 5.73854 5.85451 5.92626 6.01210 6.13353 6.15070 6.21445 6.33986 6.40757 6.50196 6.54157 6.62332 6.84813 6.88527 7.05739 7.38480 7.48645 7.64022 7.98096 8.21420 8.23073 8.32318 8.63471 9.11652 9.65084 11.11543 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.017863 B = 0.009280 C = 0.007819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.080699 B = 3016.362000 C = 3580.083739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.071 3.929 4 C 0.053 3.947 5 N -0.516 5.516 6 C 0.180 3.820 7 C -0.498 4.498 8 H 0.072 0.928 9 C 0.054 3.946 10 N -0.900 5.900 11 Si 0.890 3.110 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.272 1.272 15 C 0.107 3.893 16 H 0.061 0.939 17 C -0.117 4.117 18 C -0.116 4.116 19 C -0.151 4.151 20 C 0.050 3.950 21 H 0.119 0.881 22 O -0.572 6.572 23 H 0.034 0.966 24 H 0.080 0.920 25 H 0.031 0.969 26 H 0.039 0.961 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.014 0.986 31 H 0.023 0.977 32 H 0.259 0.741 33 H 0.102 0.898 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.501 7.194 -1.901 11.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.006 4.006 4 C -0.076 4.076 5 N -0.239 5.239 6 C 0.056 3.944 7 C -0.537 4.537 8 H 0.090 0.910 9 C -0.147 4.147 10 N -0.540 5.540 11 Si 0.718 3.282 12 H -0.209 1.209 13 H -0.214 1.214 14 H -0.197 1.197 15 C -0.003 4.003 16 H 0.079 0.921 17 C -0.155 4.155 18 C -0.154 4.154 19 C -0.190 4.190 20 C -0.010 4.010 21 H 0.136 0.864 22 O -0.376 6.376 23 H 0.052 0.948 24 H 0.098 0.902 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.031 0.969 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.121 0.879 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -9.133 6.420 -1.686 11.290 hybrid contribution 1.170 0.386 -0.819 1.480 sum -7.963 6.806 -2.505 10.770 Atomic orbital electron populations 1.22665 0.82897 1.02092 0.98934 1.88100 1.17765 1.27467 1.95032 1.22610 0.94884 0.84601 0.98492 1.22105 0.92186 0.97954 0.95353 1.62242 1.29159 1.32112 1.00349 1.20055 0.82489 0.94439 0.97461 1.21361 0.96342 1.19727 1.16238 0.91043 1.24984 0.96292 0.97168 0.96253 1.69964 1.03087 1.43237 1.37708 0.86617 0.78065 0.81870 0.81660 1.20865 1.21406 1.19709 1.22256 0.93410 0.92445 0.92141 0.92083 1.22315 0.97721 1.03076 0.92340 1.21949 0.98353 0.97375 0.97759 1.22913 0.99753 0.98388 0.97910 1.24116 1.01733 0.87012 0.88102 0.86386 1.86425 1.40479 1.43743 1.66982 0.94772 0.90152 0.95090 0.94305 0.94062 0.90890 0.93311 0.96879 0.95924 0.93092 0.87949 0.93261 0.91725 0.93000 0.92419 0.92242 0.78719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.62 10.59 -35.23 -0.37 -6.99 16 3 C 0.07 1.19 6.09 37.16 0.23 1.41 16 4 C 0.05 1.03 5.28 -3.82 -0.02 1.01 16 5 N -0.52 -11.36 4.19 -226.10 -0.95 -12.31 16 6 C 0.18 4.62 4.27 -4.98 -0.02 4.60 16 7 C -0.50 -13.44 7.59 -34.44 -0.26 -13.70 16 8 H 0.07 1.92 5.04 -52.49 -0.26 1.65 16 9 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 10 N -0.90 -26.07 13.29 55.43 0.74 -25.34 16 11 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 15 C 0.11 2.13 2.38 -66.07 -0.16 1.98 16 16 H 0.06 1.18 6.60 -51.92 -0.34 0.83 16 17 C -0.12 -2.21 6.16 -25.61 -0.16 -2.37 16 18 C -0.12 -1.97 6.80 -25.61 -0.17 -2.14 16 19 C -0.15 -2.55 6.55 -25.07 -0.16 -2.71 16 20 C 0.05 0.97 2.77 -24.75 -0.07 0.91 16 21 H 0.12 2.78 4.61 -51.93 -0.24 2.54 16 22 O -0.57 -10.47 13.22 -35.23 -0.47 -10.94 16 23 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.04 0.67 6.92 -51.93 -0.36 0.31 16 28 H 0.07 1.46 7.63 -51.93 -0.40 1.07 16 29 H 0.05 0.94 7.80 -51.93 -0.40 0.53 16 30 H 0.01 0.37 5.24 -51.93 -0.27 0.09 16 31 H 0.02 0.64 7.64 -51.93 -0.40 0.24 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.10 2.22 4.81 -51.92 -0.25 1.97 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.37 5.30 9.12 45.56 0.42 5.71 16 LS Contribution 303.49 15.07 4.57 4.57 Total: -1.00 -30.07 303.49 -6.73 -36.80 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -5.45 Total: 6.01 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 0.22 Total: -8.11 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: -0.21 Total: -37.64 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.84 Total: -17.94 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.07 -6.73 -36.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226285458.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.239 kcal (2) G-P(sol) polarization free energy of solvation -30.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds