Wall clock time and date at job start Mon Mar 30 2020 04:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99841 * 2 1 4 4 C 1.53008 * 109.46948 * 179.97438 * 3 2 1 5 5 N 1.46907 * 109.46623 * 61.30781 * 4 3 2 6 6 C 1.46897 * 110.99520 * 199.46445 * 5 4 3 7 7 C 1.50701 * 109.47082 * 162.03743 * 6 5 4 8 8 H 1.08002 * 119.99594 * 356.10196 * 7 6 5 9 9 C 1.37885 * 120.00288 * 176.10741 * 7 6 5 10 10 N 1.31511 * 119.99388 * 359.97438 * 9 7 6 11 11 Si 1.86791 * 120.00018 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47231 * 89.99804 * 11 9 7 13 13 H 1.48495 * 109.47082 * 209.99715 * 11 9 7 14 14 H 1.48503 * 109.47385 * 329.99712 * 11 9 7 15 15 C 1.46895 * 110.99971 * 75.51522 * 5 4 3 16 16 H 1.09008 * 110.53951 * 335.92443 * 15 5 4 17 17 C 1.54264 * 110.48523 * 213.31689 * 15 5 4 18 18 C 1.53873 * 106.59742 * 217.71255 * 17 15 5 19 19 C 1.54268 * 106.60017 * 359.97438 * 18 17 15 20 20 C 1.54888 * 104.19451 * 23.61207 * 19 18 17 21 21 H 1.09001 * 110.75742 * 80.37271 * 20 19 18 22 22 O 1.42897 * 110.75559 * 203.74486 * 20 19 18 23 23 H 1.09001 * 109.46991 * 59.99909 * 1 2 3 24 24 H 1.08999 * 109.47349 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46944 * 300.00411 * 1 2 3 26 26 H 1.08999 * 109.47219 * 59.99966 * 3 2 1 27 27 H 1.08995 * 109.47086 * 299.99259 * 3 2 1 28 28 H 1.09000 * 109.47063 * 301.31472 * 4 3 2 29 29 H 1.08997 * 109.47033 * 181.30738 * 4 3 2 30 30 H 1.09002 * 109.47723 * 282.03515 * 6 5 4 31 31 H 1.09004 * 109.47628 * 42.03898 * 6 5 4 32 32 H 0.97006 * 119.99438 * 180.02562 * 10 9 7 33 33 H 1.09007 * 110.03027 * 336.99060 * 17 15 5 34 34 H 1.08997 * 110.03533 * 98.42165 * 17 15 5 35 35 H 1.09000 * 110.03552 * 119.28289 * 18 17 15 36 36 H 1.09007 * 110.03074 * 240.70895 * 18 17 15 37 37 H 1.09002 * 110.48926 * 142.29243 * 19 18 17 38 38 H 1.09007 * 110.48306 * 264.80228 * 19 18 17 39 39 H 0.96704 * 114.00370 * 293.32741 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9715 0.4829 -1.2141 6 6 5.3275 -0.0581 -1.0513 7 6 5.5744 -1.1173 -2.0945 8 1 4.7807 -1.4085 -2.7666 9 6 6.8133 -1.7147 -2.1908 10 7 7.7798 -1.3597 -1.3726 11 14 7.1194 -3.0271 -3.4843 12 1 7.6061 -2.3875 -4.7329 13 1 8.1410 -3.9833 -2.9872 14 1 5.8543 -3.7539 -3.7611 15 6 3.8933 1.3632 -2.3874 16 1 3.1664 2.1583 -2.2212 17 6 3.5274 0.5521 -3.6475 18 6 4.3361 1.1559 -4.8091 19 6 5.1646 2.3133 -4.2144 20 6 5.2848 1.9611 -2.7109 21 1 6.0695 1.2221 -2.5488 22 8 5.5249 3.1356 -1.9332 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.8552 0.6237 0.8788 29 1 3.9788 2.1802 0.0241 30 1 6.0556 0.7445 -1.1692 31 1 5.4273 -0.4961 -0.0581 32 1 8.6515 -1.7798 -1.4406 33 1 3.7976 -0.4949 -3.5091 34 1 2.4601 0.6389 -3.8507 35 1 4.9986 0.4021 -5.2344 36 1 3.6611 1.5358 -5.5761 37 1 6.1509 2.3535 -4.6769 38 1 4.6439 3.2619 -4.3456 39 1 6.3837 3.5482 -2.0986 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226285458.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:22 Heat of formation + Delta-G solvation = -104.185172 kcal Electronic energy + Delta-G solvation = -19220.166062 eV Core-core repulsion = 16355.396855 eV Total energy + Delta-G solvation = -2864.769207 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.59423 -38.62525 -36.72599 -35.54053 -34.59806 -31.13792 -29.19223 -28.43777 -27.48958 -26.55882 -24.05416 -22.77971 -21.38914 -20.17940 -18.57654 -18.32725 -17.42398 -17.14020 -16.62662 -16.30628 -15.81652 -15.69362 -15.15775 -14.71645 -14.41308 -14.31262 -13.53803 -13.34946 -13.33489 -13.09157 -12.96798 -12.65996 -12.48184 -12.39631 -12.24788 -11.99046 -11.72753 -11.68564 -11.57423 -11.07806 -10.75435 -10.57517 -10.42959 -10.38849 -8.77131 -8.10576 -6.17700 1.41435 1.43561 1.54065 2.44362 3.02785 3.20509 3.30251 3.38626 3.86140 3.98296 4.15062 4.29969 4.30165 4.44801 4.57224 4.61495 4.61937 4.66777 4.71651 4.77143 4.87192 4.92216 4.92537 4.99017 5.12547 5.18806 5.21248 5.30684 5.45582 5.49492 5.57141 5.92691 6.21872 6.42315 6.51932 6.76453 6.89952 7.00578 7.50310 8.99157 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.017863 B = 0.009280 C = 0.007819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.080699 B = 3016.362000 C = 3580.083739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.080 3.920 4 C 0.051 3.949 5 N -0.525 5.525 6 C 0.198 3.802 7 C -0.501 4.501 8 H 0.073 0.927 9 C 0.004 3.996 10 N -0.935 5.935 11 Si 0.953 3.047 12 H -0.271 1.271 13 H -0.288 1.288 14 H -0.267 1.267 15 C 0.104 3.896 16 H 0.074 0.926 17 C -0.116 4.116 18 C -0.113 4.113 19 C -0.141 4.141 20 C 0.052 3.948 21 H 0.073 0.927 22 O -0.578 6.578 23 H 0.045 0.955 24 H 0.088 0.912 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.050 0.950 30 H -0.002 1.002 31 H -0.017 1.017 32 H 0.260 0.740 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.108 8.045 -3.458 13.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C 0.003 3.997 4 C -0.078 4.078 5 N -0.247 5.247 6 C 0.072 3.928 7 C -0.539 4.539 8 H 0.090 0.910 9 C -0.194 4.194 10 N -0.577 5.577 11 Si 0.779 3.221 12 H -0.197 1.197 13 H -0.214 1.214 14 H -0.191 1.191 15 C -0.005 4.005 16 H 0.092 0.908 17 C -0.153 4.153 18 C -0.151 4.151 19 C -0.180 4.180 20 C -0.007 4.007 21 H 0.091 0.909 22 O -0.385 6.385 23 H 0.064 0.936 24 H 0.107 0.893 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.015 0.985 31 H 0.001 0.999 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -10.758 7.288 -3.250 13.394 hybrid contribution 1.626 0.170 -0.264 1.656 sum -9.131 7.458 -3.514 12.302 Atomic orbital electron populations 1.22870 0.80369 1.03248 1.00490 1.88036 1.20622 1.28288 1.95374 1.22510 0.92310 0.84615 1.00254 1.22164 0.94775 0.97206 0.93657 1.62188 1.26535 1.33813 1.02198 1.19703 0.84412 0.93774 0.94882 1.21605 0.96392 1.19702 1.16178 0.90959 1.25774 0.96114 0.99264 0.98213 1.70096 1.03491 1.44601 1.39493 0.85615 0.77920 0.79185 0.79397 1.19680 1.21430 1.19129 1.22367 0.93965 0.92554 0.91587 0.90760 1.22258 0.99315 1.01007 0.92765 1.21951 0.98477 0.97039 0.97644 1.22847 1.00543 0.99300 0.95288 1.23804 0.99965 0.86574 0.90385 0.90905 1.86376 1.41820 1.43079 1.67248 0.93610 0.89343 0.93008 0.91432 0.93163 0.92727 0.93237 0.98494 0.99908 0.93130 0.91163 0.91216 0.92849 0.89698 0.91760 0.90062 0.76842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 113.37 1.25 1.89 16 2 O -0.40 -14.16 10.59 -148.98 -1.58 -15.74 16 3 C 0.08 2.53 6.09 71.98 0.44 2.97 16 4 C 0.05 1.98 5.28 86.30 0.46 2.44 16 5 N -0.52 -23.47 4.19 -869.25 -3.64 -27.12 16 6 C 0.20 10.61 4.27 85.56 0.37 10.98 16 7 C -0.50 -27.75 7.59 25.60 0.19 -27.56 16 8 H 0.07 3.96 5.04 -2.91 -0.01 3.94 16 9 C 0.00 0.20 5.46 84.66 0.46 0.67 16 10 N -0.94 -55.87 13.29 21.45 0.28 -55.59 16 11 Si 0.95 44.22 29.54 68.60 2.03 46.25 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 13 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 14 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 15 C 0.10 4.07 2.38 45.98 0.11 4.18 16 16 H 0.07 2.70 6.60 -2.38 -0.02 2.68 16 17 C -0.12 -4.20 6.16 31.32 0.19 -4.01 16 18 C -0.11 -3.55 6.80 31.32 0.21 -3.33 16 19 C -0.14 -4.43 6.55 31.67 0.21 -4.23 16 20 C 0.05 2.03 2.77 31.88 0.09 2.12 16 21 H 0.07 3.54 4.61 -2.39 -0.01 3.53 16 22 O -0.58 -20.74 13.22 -148.98 -1.97 -22.71 16 23 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.05 1.49 6.92 -2.39 -0.02 1.48 16 28 H 0.05 2.29 7.63 -2.39 -0.02 2.27 16 29 H 0.05 1.90 7.80 -2.39 -0.02 1.89 16 30 H 0.00 -0.13 5.24 -2.39 -0.01 -0.15 16 31 H -0.02 -1.03 7.64 -2.38 -0.02 -1.05 16 32 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 33 H 0.07 3.03 4.81 -2.38 -0.01 3.02 16 34 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 37 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 39 H 0.38 10.76 9.12 -74.05 -0.68 10.08 16 Total: -1.00 -66.05 303.49 -0.54 -66.59 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.36 Total: 22.20 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: 3.98 Total: -13.89 kcal Atomic # 7 Polarization: -79.35 SS G_CDS: -3.36 Total: -82.70 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -3.55 Total: -38.45 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -66.05 -0.54 -66.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226285458.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.594 kcal (2) G-P(sol) polarization free energy of solvation -66.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds