Wall clock time and date at job start Mon Mar 30 2020 04:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99380 * 2 1 4 4 C 1.53005 * 109.46832 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46862 * 55.00605 * 4 3 2 6 6 O 1.42895 * 109.47512 * 295.00041 * 4 3 2 7 7 C 1.52997 * 109.47199 * 174.99844 * 4 3 2 8 8 C 1.52995 * 109.47338 * 185.00494 * 7 4 3 9 9 N 1.46902 * 109.47261 * 180.02562 * 8 7 4 10 10 C 1.46900 * 110.99935 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.46958 * 174.70212 * 10 9 8 12 12 C 1.50700 * 115.55295 * 65.17162 * 11 10 9 13 13 H 1.08003 * 119.99900 * 264.96744 * 12 11 10 14 14 C 1.37875 * 119.99987 * 84.96255 * 12 11 10 15 15 N 1.31508 * 120.00195 * 353.06275 * 14 12 11 16 16 Si 1.86800 * 119.99799 * 173.06879 * 14 12 11 17 17 H 1.48504 * 109.47368 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47498 * 119.99744 * 16 14 12 19 19 H 1.48503 * 109.47144 * 240.00027 * 16 14 12 20 20 C 1.53000 * 117.49795 * 279.49571 * 11 10 9 21 21 C 1.53005 * 117.49648 * 210.84124 * 11 10 9 22 22 H 1.08999 * 109.47100 * 60.00134 * 1 2 3 23 23 H 1.09004 * 109.47353 * 299.99569 * 1 2 3 24 24 H 1.09007 * 109.46463 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47458 * 299.99742 * 3 2 1 26 26 H 1.09004 * 109.47459 * 60.00579 * 3 2 1 27 27 H 0.96702 * 113.99774 * 300.00185 * 6 4 3 28 28 H 1.09002 * 109.47499 * 305.00493 * 7 4 3 29 29 H 1.09002 * 109.47060 * 65.00355 * 7 4 3 30 30 H 1.09006 * 109.47112 * 299.99709 * 8 7 4 31 31 H 1.09002 * 109.47159 * 59.99921 * 8 7 4 32 32 H 1.00904 * 111.00045 * 56.04960 * 9 8 7 33 33 H 1.08997 * 109.47375 * 294.70238 * 10 9 8 34 34 H 1.09000 * 109.47166 * 54.70253 * 10 9 8 35 35 H 0.97007 * 120.00296 * 185.03462 * 15 14 12 36 36 H 1.08997 * 117.49822 * 0.02562 * 20 11 10 37 37 H 1.08999 * 117.49534 * 145.02094 * 20 11 10 38 38 H 1.09002 * 117.49624 * 214.98163 * 21 11 10 39 39 H 1.08998 * 117.49817 * 359.97380 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8514 0.5684 -0.8410 6 8 3.9649 0.5798 1.2219 7 6 4.1573 2.5770 -0.1251 8 6 5.6766 2.4476 -0.2500 9 7 6.2737 3.7844 -0.3701 10 6 7.7352 3.6992 -0.4916 11 6 8.3080 5.0948 -0.7466 12 6 8.1359 6.0835 0.3778 13 1 7.2970 6.7637 0.3750 14 6 9.0492 6.1194 1.4100 15 7 9.9914 5.2052 1.4865 16 14 8.9483 7.4668 2.6999 17 1 7.8072 8.3650 2.3892 18 1 8.7480 6.8564 4.0388 19 1 10.2096 8.2505 2.6968 20 6 8.2450 5.6338 -2.1771 21 6 9.5850 5.1923 -1.5836 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5138 0.8900 24 1 -0.3632 -1.0278 0.0005 25 1 1.6885 1.8464 -0.8900 26 1 1.6886 1.8464 0.8900 27 1 3.7176 1.0755 2.0146 28 1 3.7609 3.0734 -1.0109 29 1 3.9142 3.1648 0.7601 30 1 6.0730 1.9513 0.6359 31 1 5.9197 1.8598 -1.1352 32 1 6.0095 4.3698 0.4081 33 1 8.1538 3.2977 0.4312 34 1 7.9930 3.0432 -1.3231 35 1 10.5885 5.1867 2.2508 36 1 7.7951 4.9944 -2.9365 37 1 8.0793 6.7036 -2.3049 38 1 10.3005 5.9716 -1.3213 39 1 10.0173 4.2621 -1.9523 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230162348.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:39 Heat of formation + Delta-G solvation = -83.752272 kcal Electronic energy + Delta-G solvation = -17573.797945 eV Core-core repulsion = 14709.914775 eV Total energy + Delta-G solvation = -2863.883170 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.77892 -37.16894 -36.61217 -34.46670 -31.90775 -31.35146 -28.50813 -26.36078 -25.47922 -24.05780 -21.97311 -21.29859 -20.86765 -18.99300 -16.90038 -16.65311 -16.20346 -15.86281 -15.34634 -15.06582 -14.60616 -14.49940 -13.88846 -13.69352 -13.24219 -12.74823 -12.48479 -12.23310 -12.05113 -11.71637 -11.34495 -11.07318 -10.98160 -10.92171 -10.70907 -10.65877 -10.41153 -10.11407 -10.02846 -9.90318 -9.36240 -8.71685 -8.40761 -8.03413 -7.45385 -6.00901 -4.07084 3.27064 3.36391 3.39949 3.44749 4.39426 4.40594 4.67252 4.89393 4.92918 5.06137 5.08060 5.24953 5.25411 5.28369 5.35345 5.41704 5.59269 5.77012 5.83809 5.97685 6.20301 6.34840 6.38138 6.52608 6.62772 6.88395 6.88767 6.90616 6.96424 7.20783 7.56077 7.59611 7.64731 7.89673 8.03033 8.31571 8.52603 8.96457 9.58456 11.07031 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.029005 B = 0.004328 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.110409 B = 6468.482227 C = 6947.237359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.383 6.383 3 C 0.029 3.971 4 C 0.111 3.889 5 H 0.105 0.895 6 O -0.553 6.553 7 C -0.145 4.145 8 C 0.063 3.937 9 N -0.683 5.683 10 C 0.106 3.894 11 C 0.050 3.950 12 C -0.493 4.493 13 H 0.060 0.940 14 C 0.069 3.931 15 N -0.879 5.879 16 Si 0.887 3.113 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.284 1.284 20 C -0.201 4.201 21 C -0.163 4.163 22 H 0.040 0.960 23 H 0.039 0.961 24 H 0.085 0.915 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.372 0.628 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.029 0.971 31 H 0.062 0.938 32 H 0.345 0.655 33 H 0.035 0.965 34 H 0.036 0.964 35 H 0.258 0.742 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.824 -6.954 -1.851 16.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.302 6.302 3 C -0.048 4.048 4 C 0.051 3.949 5 H 0.123 0.877 6 O -0.357 6.357 7 C -0.183 4.183 8 C -0.067 4.067 9 N -0.314 5.314 10 C -0.023 4.023 11 C 0.050 3.950 12 C -0.531 4.531 13 H 0.078 0.922 14 C -0.134 4.134 15 N -0.516 5.516 16 Si 0.715 3.285 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.210 1.210 20 C -0.238 4.238 21 C -0.201 4.201 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.103 0.897 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.218 0.782 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.163 0.837 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.363 -7.550 -2.863 16.478 hybrid contribution -0.162 1.171 1.989 2.313 sum -14.526 -6.379 -0.874 15.889 Atomic orbital electron populations 1.22755 0.81383 1.02685 0.99845 1.87959 1.19328 1.27543 1.95357 1.23384 0.95438 0.85077 1.00909 1.21941 0.89696 0.94719 0.88541 0.87685 1.86629 1.80991 1.52767 1.15340 1.22185 0.97200 0.95611 1.03283 1.21782 0.92386 0.92426 1.00097 1.60474 1.11030 1.10318 1.49625 1.21419 0.85316 0.97161 0.98373 1.18741 0.95222 0.92478 0.88581 1.20506 1.09483 1.17534 1.05580 0.92177 1.25012 0.94861 0.95645 0.97833 1.70003 1.18867 1.33401 1.29359 0.86626 0.78015 0.82516 0.81369 1.19698 1.21186 1.21032 1.22866 1.02315 0.99325 0.99304 1.22536 0.91290 1.00466 1.05834 0.94158 0.94204 0.89679 0.92298 0.93034 0.78157 0.90137 0.91567 0.95240 0.91980 0.83673 0.94643 0.94531 0.93165 0.91719 0.90947 0.90360 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.50 10.67 -40.08 -0.43 -4.93 16 3 C 0.03 0.29 5.57 37.16 0.21 0.50 16 4 C 0.11 1.30 3.25 -26.73 -0.09 1.22 16 5 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 6 O -0.55 -7.22 12.84 -40.08 -0.51 -7.74 16 7 C -0.14 -1.80 5.15 -26.74 -0.14 -1.94 16 8 C 0.06 1.02 5.57 -3.83 -0.02 1.00 16 9 N -0.68 -13.35 6.47 -113.78 -0.74 -14.09 16 10 C 0.11 2.41 5.54 -3.82 -0.02 2.39 16 11 C 0.05 1.25 1.56 -155.66 -0.24 1.00 16 12 C -0.49 -13.21 8.32 -34.44 -0.29 -13.49 16 13 H 0.06 1.62 7.82 -52.48 -0.41 1.21 16 14 C 0.07 1.88 5.39 -17.82 -0.10 1.78 16 15 N -0.88 -24.81 12.95 55.43 0.72 -24.09 16 16 Si 0.89 20.85 29.55 -169.99 -5.02 15.83 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C -0.20 -4.54 9.96 -26.70 -0.27 -4.81 16 21 C -0.16 -3.94 9.46 -26.69 -0.25 -4.19 16 22 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 23 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.37 3.60 9.05 45.56 0.41 4.01 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.03 0.51 7.82 -51.93 -0.41 0.10 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.34 6.97 8.30 -39.29 -0.33 6.65 16 33 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.04 0.80 8.08 -51.93 -0.42 0.38 16 35 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 36 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 38 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 39 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 327.95 15.07 4.94 4.94 Total: -1.00 -29.91 327.95 -7.34 -37.24 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -6.20 Total: 8.02 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -0.09 Total: -15.19 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: -0.02 Total: -38.18 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.94 Total: -12.67 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.91 -7.34 -37.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230162348.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.511 kcal (2) G-P(sol) polarization free energy of solvation -29.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds