Wall clock time and date at job start Mon Mar 30 2020 04:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99822 * 2 1 4 4 C 1.53005 * 109.46951 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46848 * 54.99821 * 4 3 2 6 6 C 1.53004 * 109.47035 * 174.99517 * 4 3 2 7 7 N 1.46897 * 109.46843 * 179.64323 * 6 4 3 8 8 C 1.46897 * 111.00178 * 86.15747 * 7 6 4 9 9 C 1.52997 * 109.47444 * 185.25444 * 8 7 6 10 10 C 1.50698 * 115.54932 * 305.01442 * 9 8 7 11 11 H 1.08002 * 120.00733 * 144.60280 * 10 9 8 12 12 C 1.37882 * 119.99720 * 324.59303 * 10 9 8 13 13 N 1.31515 * 119.99838 * 167.53820 * 12 10 9 14 14 Si 1.86795 * 120.00206 * 347.54347 * 12 10 9 15 15 H 1.48495 * 109.47286 * 95.59833 * 14 12 10 16 16 H 1.48501 * 109.47005 * 215.60274 * 14 12 10 17 17 H 1.48505 * 109.47059 * 335.59853 * 14 12 10 18 18 C 1.52994 * 117.50276 * 159.33955 * 9 8 7 19 19 C 1.52998 * 117.50152 * 90.67752 * 9 8 7 20 20 O 1.42892 * 109.47299 * 294.99786 * 4 3 2 21 21 C 1.42900 * 113.99901 * 144.18318 * 20 4 3 22 22 H 1.09002 * 109.47338 * 300.00480 * 1 2 3 23 23 H 1.09008 * 109.46975 * 60.00517 * 1 2 3 24 24 H 1.08996 * 109.47458 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47619 * 59.99360 * 3 2 1 26 26 H 1.09001 * 109.47115 * 299.99403 * 3 2 1 27 27 H 1.08997 * 109.46876 * 299.64246 * 6 4 3 28 28 H 1.09000 * 109.47030 * 59.64143 * 6 4 3 29 29 H 1.00900 * 111.00133 * 210.11311 * 7 6 4 30 30 H 1.09000 * 109.47217 * 305.25362 * 8 7 6 31 31 H 1.09003 * 109.47211 * 65.25196 * 8 7 6 32 32 H 0.96998 * 120.00122 * 180.02562 * 13 12 10 33 33 H 1.09003 * 117.49949 * 359.97438 * 18 9 8 34 34 H 1.09000 * 117.50253 * 145.02179 * 18 9 8 35 35 H 1.08998 * 117.50636 * 214.98673 * 19 9 8 36 36 H 1.09003 * 117.49633 * 359.97438 * 19 9 8 37 37 H 1.09001 * 109.47065 * 65.38251 * 21 20 4 38 38 H 1.09008 * 109.46985 * 185.37746 * 21 20 4 39 39 H 1.08999 * 109.47411 * 305.38128 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8514 0.5681 -0.8410 6 6 4.1574 2.5769 -0.1252 7 7 5.6218 2.4616 -0.1160 8 6 6.1383 2.2064 -1.4673 9 6 7.6472 1.9628 -1.3990 10 6 8.4515 3.0492 -0.7327 11 1 9.3170 2.7938 -0.1394 12 6 8.0824 4.3694 -0.8809 13 7 8.6215 5.2927 -0.1150 14 14 6.8167 4.8466 -2.1691 15 1 5.4742 4.9240 -1.5392 16 1 7.1706 6.1690 -2.7446 17 1 6.7993 3.8260 -3.2477 18 6 8.2964 1.2190 -2.5678 19 6 8.1224 0.5198 -1.2172 20 8 3.9649 0.5797 1.2219 21 6 5.0918 -0.2868 1.0765 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 1.6885 1.8464 0.8898 26 1 1.6886 1.8463 -0.8900 27 1 3.8349 3.0357 -1.0598 28 1 3.8363 3.1954 0.7129 29 1 6.0468 3.2847 0.2841 30 1 5.6469 1.3272 -1.8840 31 1 5.9380 3.0696 -2.1019 32 1 8.3617 6.2215 -0.2190 33 1 7.6485 0.9028 -3.3853 34 1 9.3054 1.5152 -2.8547 35 1 9.0169 0.3563 -0.6162 36 1 7.3599 -0.2559 -1.1459 37 1 5.9619 0.2963 0.7747 38 1 5.2965 -0.7793 2.0272 39 1 4.8767 -1.0383 0.3168 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234784819.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:08 Heat of formation + Delta-G solvation = -48.426104 kcal Electronic energy + Delta-G solvation = -18741.524978 eV Core-core repulsion = 15879.173666 eV Total energy + Delta-G solvation = -2862.351312 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.73388 -37.49713 -36.71564 -34.22841 -32.25068 -30.77241 -27.33563 -26.35863 -25.60102 -24.99591 -23.18887 -21.40981 -20.66554 -19.07045 -17.00657 -16.44919 -16.38673 -16.02360 -15.44678 -15.16392 -14.58581 -14.39772 -13.96887 -13.50277 -13.45888 -12.89492 -12.67456 -12.44078 -12.04910 -11.86670 -11.56701 -11.28636 -11.10456 -10.92663 -10.63185 -10.43168 -10.34385 -9.86680 -9.72825 -9.44924 -9.30542 -9.20048 -8.80312 -8.37054 -7.52107 -6.21415 -4.11245 3.09203 3.29216 3.30488 3.64972 4.16112 4.26420 4.66041 4.91927 5.11752 5.18819 5.24671 5.33002 5.41236 5.42072 5.52416 5.61189 5.63738 5.76038 5.78296 5.88403 5.98941 6.09183 6.16984 6.22784 6.37778 6.52531 6.57981 6.61051 6.74879 6.95800 7.09754 7.19740 7.62322 7.69459 7.79461 8.13106 8.48283 8.87024 9.42248 10.91070 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.026426 B = 0.007126 C = 0.006441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.315608 B = 3928.425847 C = 4346.284251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.061 3.939 4 C 0.102 3.898 5 H 0.064 0.936 6 C 0.036 3.964 7 N -0.667 5.667 8 C 0.080 3.920 9 C 0.015 3.985 10 C -0.469 4.469 11 H 0.078 0.922 12 C 0.072 3.928 13 N -0.888 5.888 14 Si 0.885 3.115 15 H -0.286 1.286 16 H -0.299 1.299 17 H -0.263 1.263 18 C -0.213 4.213 19 C -0.180 4.180 20 O -0.372 6.372 21 C 0.033 3.967 22 H 0.040 0.960 23 H 0.038 0.962 24 H 0.083 0.917 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.363 0.637 30 H 0.053 0.947 31 H 0.023 0.977 32 H 0.265 0.735 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.235 -7.223 -1.390 15.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C -0.016 4.016 4 C 0.042 3.958 5 H 0.082 0.918 6 C -0.095 4.095 7 N -0.301 5.301 8 C -0.048 4.048 9 C 0.014 3.986 10 C -0.506 4.506 11 H 0.096 0.904 12 C -0.131 4.131 13 N -0.525 5.525 14 Si 0.717 3.283 15 H -0.214 1.214 16 H -0.227 1.227 17 H -0.189 1.189 18 C -0.251 4.251 19 C -0.217 4.217 20 O -0.291 6.291 21 C -0.063 4.063 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.102 0.898 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.092 0.908 29 H 0.185 0.815 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -13.188 -7.786 -0.961 15.345 hybrid contribution -0.875 1.372 -1.450 2.180 sum -14.063 -6.413 -2.410 15.643 Atomic orbital electron populations 1.22721 0.81502 1.02521 0.99759 1.87926 1.19231 1.27796 1.95360 1.22698 0.93380 0.84928 1.00569 1.22015 0.90514 0.94608 0.88642 0.91795 1.22348 0.90894 0.95693 1.00523 1.60141 1.02278 1.46365 1.21306 1.21934 0.95611 0.98263 0.88989 1.19244 0.90371 0.91986 0.97017 1.20376 1.12285 0.88478 1.29475 0.90409 1.24980 0.96392 0.96553 0.95126 1.69927 1.44048 1.01579 1.36937 0.87025 0.80879 0.76703 0.83672 1.21382 1.22735 1.18853 1.23141 1.02046 1.08551 0.91371 1.22709 1.02261 0.96766 0.99968 1.87771 1.48662 1.62785 1.29833 1.22892 0.90199 0.92704 1.00530 0.94134 0.94364 0.89812 0.92419 0.92432 0.94479 0.90800 0.81471 0.92827 0.96016 0.92488 0.91707 0.89778 0.90136 0.91097 0.90363 0.91141 0.95607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.43 16 2 O -0.38 -5.46 10.67 -40.08 -0.43 -5.89 16 3 C 0.06 0.83 5.60 37.16 0.21 1.04 16 4 C 0.10 1.63 2.68 -26.73 -0.07 1.56 16 5 H 0.06 1.06 6.97 -51.92 -0.36 0.70 16 6 C 0.04 0.62 5.63 -3.82 -0.02 0.60 16 7 N -0.67 -13.50 4.56 -113.78 -0.52 -14.02 16 8 C 0.08 1.69 4.26 -3.83 -0.02 1.67 16 9 C 0.02 0.34 1.56 -155.67 -0.24 0.10 16 10 C -0.47 -12.59 9.00 -34.44 -0.31 -12.90 16 11 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 12 C 0.07 1.96 4.65 -17.82 -0.08 1.87 16 13 N -0.89 -25.77 13.96 55.43 0.77 -24.99 16 14 Si 0.89 21.12 23.48 -169.99 -3.99 17.13 16 15 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 17 H -0.26 -6.14 6.40 56.52 0.36 -5.78 16 18 C -0.21 -4.45 9.96 -26.70 -0.27 -4.72 16 19 C -0.18 -3.66 9.93 -26.70 -0.27 -3.93 16 20 O -0.37 -6.58 10.24 -40.08 -0.41 -6.99 16 21 C 0.03 0.54 10.67 101.05 1.08 1.62 16 22 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.04 0.32 8.14 -51.92 -0.42 -0.10 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.61 7.84 -51.93 -0.41 0.21 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.36 8.19 6.70 -39.29 -0.26 7.93 16 30 H 0.05 1.04 7.37 -51.93 -0.38 0.65 16 31 H 0.02 0.49 2.59 -51.93 -0.13 0.36 16 32 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 35 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.08 1.43 6.69 -51.93 -0.35 1.08 16 38 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 39 H 0.03 0.39 7.97 -51.93 -0.41 -0.02 16 LS Contribution 310.50 15.07 4.68 4.68 Total: -1.00 -29.11 310.50 -5.33 -34.45 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -6.56 Total: 7.29 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 1.12 Total: -11.65 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.25 Total: -39.02 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -0.84 Total: -12.88 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -3.99 Total: 17.13 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.11 -5.33 -34.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234784819.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.981 kcal (2) G-P(sol) polarization free energy of solvation -29.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds