Wall clock time and date at job start Mon Mar 30 2020 04:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99822 * 2 1 4 4 C 1.53005 * 109.46951 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46848 * 54.99821 * 4 3 2 6 6 C 1.53004 * 109.47035 * 174.99517 * 4 3 2 7 7 N 1.46897 * 109.46843 * 179.64323 * 6 4 3 8 8 C 1.46897 * 111.00178 * 86.15747 * 7 6 4 9 9 C 1.52997 * 109.47444 * 185.25444 * 8 7 6 10 10 C 1.50698 * 115.54932 * 305.01442 * 9 8 7 11 11 H 1.08002 * 120.00733 * 144.60280 * 10 9 8 12 12 C 1.37882 * 119.99720 * 324.59303 * 10 9 8 13 13 N 1.31515 * 119.99838 * 167.53820 * 12 10 9 14 14 Si 1.86795 * 120.00206 * 347.54347 * 12 10 9 15 15 H 1.48495 * 109.47286 * 95.59833 * 14 12 10 16 16 H 1.48501 * 109.47005 * 215.60274 * 14 12 10 17 17 H 1.48505 * 109.47059 * 335.59853 * 14 12 10 18 18 C 1.52994 * 117.50276 * 159.33955 * 9 8 7 19 19 C 1.52998 * 117.50152 * 90.67752 * 9 8 7 20 20 O 1.42892 * 109.47299 * 294.99786 * 4 3 2 21 21 C 1.42900 * 113.99901 * 144.18318 * 20 4 3 22 22 H 1.09002 * 109.47338 * 300.00480 * 1 2 3 23 23 H 1.09008 * 109.46975 * 60.00517 * 1 2 3 24 24 H 1.08996 * 109.47458 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47619 * 59.99360 * 3 2 1 26 26 H 1.09001 * 109.47115 * 299.99403 * 3 2 1 27 27 H 1.08997 * 109.46876 * 299.64246 * 6 4 3 28 28 H 1.09000 * 109.47030 * 59.64143 * 6 4 3 29 29 H 1.00900 * 111.00133 * 210.11311 * 7 6 4 30 30 H 1.09000 * 109.47217 * 305.25362 * 8 7 6 31 31 H 1.09003 * 109.47211 * 65.25196 * 8 7 6 32 32 H 0.96998 * 120.00122 * 180.02562 * 13 12 10 33 33 H 1.09003 * 117.49949 * 359.97438 * 18 9 8 34 34 H 1.09000 * 117.50253 * 145.02179 * 18 9 8 35 35 H 1.08998 * 117.50636 * 214.98673 * 19 9 8 36 36 H 1.09003 * 117.49633 * 359.97438 * 19 9 8 37 37 H 1.09001 * 109.47065 * 65.38251 * 21 20 4 38 38 H 1.09008 * 109.46985 * 185.37746 * 21 20 4 39 39 H 1.08999 * 109.47411 * 305.38128 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8514 0.5681 -0.8410 6 6 4.1574 2.5769 -0.1252 7 7 5.6218 2.4616 -0.1160 8 6 6.1383 2.2064 -1.4673 9 6 7.6472 1.9628 -1.3990 10 6 8.4515 3.0492 -0.7327 11 1 9.3170 2.7938 -0.1394 12 6 8.0824 4.3694 -0.8809 13 7 8.6215 5.2927 -0.1150 14 14 6.8167 4.8466 -2.1691 15 1 5.4742 4.9240 -1.5392 16 1 7.1706 6.1690 -2.7446 17 1 6.7993 3.8260 -3.2477 18 6 8.2964 1.2190 -2.5678 19 6 8.1224 0.5198 -1.2172 20 8 3.9649 0.5797 1.2219 21 6 5.0918 -0.2868 1.0765 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 1.6885 1.8464 0.8898 26 1 1.6886 1.8463 -0.8900 27 1 3.8349 3.0357 -1.0598 28 1 3.8363 3.1954 0.7129 29 1 6.0468 3.2847 0.2841 30 1 5.6469 1.3272 -1.8840 31 1 5.9380 3.0696 -2.1019 32 1 8.3617 6.2215 -0.2190 33 1 7.6485 0.9028 -3.3853 34 1 9.3054 1.5152 -2.8547 35 1 9.0169 0.3563 -0.6162 36 1 7.3599 -0.2559 -1.1459 37 1 5.9619 0.2963 0.7747 38 1 5.2965 -0.7793 2.0272 39 1 4.8767 -1.0383 0.3168 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234784819.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:08 Heat of formation + Delta-G solvation = -69.540637 kcal Electronic energy + Delta-G solvation = -18742.440573 eV Core-core repulsion = 15879.173666 eV Total energy + Delta-G solvation = -2863.266907 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.00256 -38.92836 -37.96860 -35.72788 -34.31895 -32.00924 -28.71593 -27.65159 -27.02648 -26.49593 -24.48197 -23.03847 -21.97882 -20.93973 -18.64874 -17.77274 -17.64973 -17.46762 -16.78914 -16.28709 -15.96893 -15.84288 -15.36668 -15.24112 -14.76453 -14.61562 -14.22955 -13.74373 -13.53437 -13.12669 -12.91234 -12.57072 -12.53933 -12.48774 -12.14469 -12.07113 -11.69449 -11.54191 -11.29239 -11.17933 -10.72564 -10.64228 -10.47922 -10.27342 -9.05518 -8.31490 -6.24834 1.20481 1.35322 1.43626 2.27511 2.65451 2.86396 2.96939 3.32626 3.68380 3.99955 4.11774 4.14214 4.18099 4.24317 4.42161 4.48919 4.49504 4.55895 4.56860 4.62841 4.64988 4.69495 4.83055 4.85151 4.86544 4.95624 4.97720 5.07243 5.24849 5.26930 5.55233 5.71622 6.15118 6.25273 6.34567 6.43195 6.46575 6.74447 7.31624 8.85208 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.026426 B = 0.007126 C = 0.006441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.315608 B = 3928.425847 C = 4346.284251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.065 3.935 4 C 0.102 3.898 5 H 0.060 0.940 6 C 0.034 3.966 7 N -0.675 5.675 8 C 0.088 3.912 9 C -0.014 4.014 10 C -0.472 4.472 11 H 0.030 0.970 12 C 0.027 3.973 13 N -0.938 5.938 14 Si 0.945 3.055 15 H -0.267 1.267 16 H -0.309 1.309 17 H -0.249 1.249 18 C -0.202 4.202 19 C -0.164 4.164 20 O -0.389 6.389 21 C 0.035 3.965 22 H 0.048 0.952 23 H 0.053 0.947 24 H 0.096 0.904 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.346 0.654 30 H 0.077 0.923 31 H 0.015 0.985 32 H 0.266 0.734 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.792 -8.403 -2.832 18.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C -0.012 4.012 4 C 0.043 3.957 5 H 0.079 0.921 6 C -0.096 4.096 7 N -0.307 5.307 8 C -0.040 4.040 9 C -0.015 4.015 10 C -0.509 4.509 11 H 0.048 0.952 12 C -0.171 4.171 13 N -0.577 5.577 14 Si 0.775 3.225 15 H -0.193 1.193 16 H -0.238 1.238 17 H -0.174 1.174 18 C -0.240 4.240 19 C -0.201 4.201 20 O -0.308 6.308 21 C -0.061 4.061 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.115 0.885 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.165 0.835 30 H 0.095 0.905 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -15.767 -9.006 -2.410 18.317 hybrid contribution -0.023 1.663 -0.926 1.903 sum -15.791 -7.343 -3.336 17.731 Atomic orbital electron populations 1.22939 0.79387 1.03833 1.00890 1.87872 1.21564 1.28079 1.95601 1.22649 0.91565 0.85160 1.01834 1.22069 0.92240 0.93482 0.87886 0.92146 1.22458 0.88895 0.96865 1.01349 1.60145 1.04138 1.45479 1.20900 1.21846 0.94106 0.98819 0.89267 1.19249 0.91432 0.92020 0.98790 1.20465 1.11329 0.90156 1.28985 0.95165 1.25633 0.98477 0.96246 0.96762 1.70065 1.46480 1.02005 1.39131 0.86056 0.79260 0.75870 0.81362 1.19328 1.23823 1.17354 1.23150 1.01792 1.07129 0.91918 1.22717 1.02257 0.95814 0.99358 1.87757 1.48863 1.63109 1.31027 1.22865 0.89160 0.92493 1.01562 0.93360 0.92829 0.88534 0.92029 0.90253 0.93231 0.90342 0.83451 0.90512 0.96810 0.92496 0.88901 0.90742 0.91186 0.88506 0.92441 0.89971 0.94526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.67 16 2 O -0.41 -10.55 10.67 -144.34 -1.54 -12.09 16 3 C 0.06 1.57 5.60 71.98 0.40 1.97 16 4 C 0.10 3.02 2.68 30.60 0.08 3.10 16 5 H 0.06 1.82 6.97 -2.38 -0.02 1.80 16 6 C 0.03 1.09 5.63 86.31 0.49 1.58 16 7 N -0.67 -26.33 4.56 -513.90 -2.34 -28.67 16 8 C 0.09 3.47 4.26 86.30 0.37 3.84 16 9 C -0.01 -0.61 1.56 -52.93 -0.08 -0.70 16 10 C -0.47 -25.95 9.00 25.60 0.23 -25.72 16 11 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 12 C 0.03 1.49 4.65 84.66 0.39 1.88 16 13 N -0.94 -56.23 13.96 21.45 0.30 -55.93 16 14 Si 0.95 43.21 23.48 68.60 1.61 44.82 16 15 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 16 H -0.31 -14.54 7.11 99.48 0.71 -13.84 16 17 H -0.25 -10.71 6.40 99.48 0.64 -10.08 16 18 C -0.20 -7.97 9.96 30.62 0.30 -7.66 16 19 C -0.16 -6.42 9.93 30.62 0.30 -6.11 16 20 O -0.39 -13.05 10.24 -144.34 -1.48 -14.53 16 21 C 0.04 1.11 10.67 113.37 1.21 2.31 16 22 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 23 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 24 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.05 1.46 7.84 -2.39 -0.02 1.44 16 28 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.35 15.51 6.70 -89.69 -0.60 14.91 16 30 H 0.08 2.67 7.37 -2.39 -0.02 2.65 16 31 H 0.01 0.60 2.59 -2.39 -0.01 0.59 16 32 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 33 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 34 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 35 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 36 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 37 H 0.06 2.03 6.69 -2.39 -0.02 2.01 16 38 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 39 H 0.04 1.04 7.97 -2.39 -0.02 1.02 16 Total: -1.00 -63.40 310.50 1.84 -61.56 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: 0.35 Total: 28.67 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 4.95 Total: -23.83 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -2.04 Total: -84.60 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -3.02 Total: -26.62 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.61 Total: 44.82 kcal Total: -63.40 1.84 -61.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234784819.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.982 kcal (2) G-P(sol) polarization free energy of solvation -63.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds