Wall clock time and date at job start Mon Mar 30 2020 04:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00190 * 2 1 4 4 H 1.48497 * 109.47167 * 269.99677 * 3 2 1 5 5 H 1.48500 * 109.47028 * 29.99825 * 3 2 1 6 6 H 1.48497 * 109.47377 * 149.99860 * 3 2 1 7 7 C 1.37877 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99852 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00129 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 60.00169 * 9 7 2 11 11 N 1.46899 * 109.47244 * 300.00290 * 9 7 2 12 12 C 1.50703 * 109.47227 * 180.02562 * 9 7 2 13 13 C 1.40910 * 126.28762 * 99.99692 * 12 9 7 14 14 C 1.34832 * 107.42920 * 179.97438 * 13 12 9 15 15 N 1.36440 * 108.22636 * 0.02562 * 14 13 12 16 16 H 0.97007 * 125.64576 * 179.97438 * 15 14 13 17 17 C 1.34942 * 126.29069 * 279.69236 * 12 9 7 18 18 Br 1.89101 * 125.89696 * 359.97438 * 17 12 9 19 19 H 0.96999 * 119.99716 * 359.97438 * 1 2 3 20 20 H 1.00903 * 110.99833 * 299.99603 * 11 9 7 21 21 H 1.00901 * 111.00152 * 63.94840 * 11 9 7 22 22 H 1.08000 * 126.28972 * 0.04160 * 13 12 9 23 23 H 1.08005 * 125.88833 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8745 -0.6801 0.8912 11 7 4.0017 -0.5018 -1.1982 12 6 4.0138 -2.6149 0.0010 13 6 4.4781 -3.3352 -1.1176 14 6 4.8325 -4.5633 -0.6884 15 7 4.6034 -4.6285 0.6551 16 1 4.7699 -5.3991 1.2202 17 6 4.1070 -3.4292 1.0730 18 35 3.6284 -2.9851 2.8477 19 1 -0.4850 0.8401 0.0004 20 1 3.6785 -0.9596 -2.0374 21 1 3.7322 0.4705 -1.1901 22 1 4.5400 -2.9703 -2.1321 23 1 5.2292 -5.3585 -1.3023 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238617705.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:03 Heat of formation + Delta-G solvation = 53.844748 kcal Electronic energy + Delta-G solvation = -10718.319434 eV Core-core repulsion = 8613.759203 eV Total energy + Delta-G solvation = -2104.560231 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 243.991 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.50867 -34.95607 -31.78182 -31.00447 -29.85354 -27.60353 -25.67262 -22.15538 -20.28025 -18.35837 -17.34788 -16.89407 -15.17543 -14.19085 -13.74570 -13.20065 -12.91647 -12.59484 -12.39894 -11.70906 -11.31703 -10.74144 -10.68532 -10.30621 -10.06560 -9.76568 -9.40024 -8.65035 -8.13880 -7.62329 -7.19083 -6.09291 -4.09797 2.06087 2.61403 3.22419 3.36706 3.38918 3.62627 3.89453 4.35680 5.20775 5.48350 5.84025 6.11261 6.18895 6.64951 6.74754 7.16093 7.36828 7.58977 7.64111 7.91832 8.24176 8.44719 8.66110 9.00085 9.51246 11.03932 Molecular weight = 243.99amu Principal moments of inertia in cm(-1) A = 0.028794 B = 0.012299 C = 0.009823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.187776 B = 2276.047475 C = 2849.773189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.868 3.132 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.258 1.258 7 C -0.528 4.528 8 H 0.074 0.926 9 C 0.232 3.768 10 H 0.050 0.950 11 N -0.847 5.847 12 C -0.049 4.049 13 C -0.182 4.182 14 C -0.009 4.009 15 N -0.556 5.556 16 H 0.409 0.591 17 C -0.013 4.013 18 Br -0.011 7.011 19 H 0.264 0.736 20 H 0.331 0.669 21 H 0.315 0.685 22 H 0.139 0.861 23 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.305 -7.941 3.064 12.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.131 4.131 3 Si 0.697 3.303 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.183 1.183 7 C -0.568 4.568 8 H 0.093 0.907 9 C 0.122 3.878 10 H 0.068 0.932 11 N -0.379 5.379 12 C -0.058 4.058 13 C -0.209 4.209 14 C -0.141 4.141 15 N -0.155 5.155 16 H 0.245 0.755 17 C -0.201 4.201 18 Br 0.072 6.928 19 H 0.074 0.926 20 H 0.143 0.857 21 H 0.131 0.869 22 H 0.156 0.844 23 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 9.720 -7.952 4.112 13.214 hybrid contribution -0.614 0.542 -0.360 0.895 sum 9.106 -7.410 3.752 12.325 Atomic orbital electron populations 1.69899 1.06145 1.26839 1.50373 1.24990 0.94772 0.98773 0.94527 0.87082 0.80556 0.84191 0.78472 1.20300 1.21943 1.18281 1.21578 0.89605 0.94675 1.50958 0.90746 1.17964 0.93260 0.86234 0.90330 0.93226 1.59616 1.66945 1.05336 1.06049 1.19576 0.98935 0.96907 0.90419 1.20738 1.07413 0.93515 0.99218 1.21793 1.08925 1.00087 0.83339 1.41760 1.53244 1.11970 1.08483 0.75479 1.21436 1.16201 0.89967 0.92503 1.96605 1.92281 1.92897 1.11016 0.92647 0.85725 0.86914 0.84368 0.81974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.23 13.96 55.43 0.77 -26.45 14 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 14 3 Si 0.87 21.36 24.61 -169.99 -4.18 17.18 14 4 H -0.28 -6.51 7.01 56.52 0.40 -6.11 14 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 14 6 H -0.26 -6.23 6.54 56.52 0.37 -5.86 14 7 C -0.53 -14.80 9.29 -34.44 -0.32 -15.12 14 8 H 0.07 2.32 7.98 -52.49 -0.42 1.91 14 9 C 0.23 5.66 2.41 -70.02 -0.17 5.49 14 10 H 0.05 1.28 7.15 -51.93 -0.37 0.91 14 11 N -0.85 -19.14 8.86 -6.65 -0.06 -19.20 14 12 C -0.05 -1.06 5.21 -104.78 -0.55 -1.60 14 13 C -0.18 -3.40 10.06 -39.78 -0.40 -3.80 14 14 C -0.01 -0.14 11.94 -16.71 -0.20 -0.34 14 15 N -0.56 -8.62 6.08 -11.26 -0.07 -8.69 14 16 H 0.41 4.86 8.96 -40.82 -0.37 4.49 14 17 C -0.01 -0.26 7.64 -16.71 -0.13 -0.39 14 18 Br -0.01 -0.21 33.74 -68.01 -2.29 -2.50 14 19 H 0.26 7.55 8.31 -40.82 -0.34 7.21 14 20 H 0.33 7.08 8.09 -39.29 -0.32 6.76 14 21 H 0.32 7.25 4.30 -39.29 -0.17 7.08 14 22 H 0.14 2.39 7.50 -52.49 -0.39 2.00 14 23 H 0.16 1.75 8.06 -52.48 -0.42 1.33 14 LS Contribution 220.29 15.07 3.32 3.32 Total: -1.00 -31.26 220.29 -6.00 -37.26 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -1.63 Total: 12.88 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -1.86 Total: -13.80 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.65 Total: -54.34 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.18 Total: 17.18 kcal Atomic # 35 Polarization: -0.21 SS G_CDS: -2.29 Total: -2.50 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -31.26 -6.00 -37.26 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238617705.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.107 kcal (2) G-P(sol) polarization free energy of solvation -31.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds