Wall clock time and date at job start Mon Mar 30 2020 04:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30489 * 125.63740 * 2 1 4 4 C 1.34154 * 109.25964 * 180.29111 * 3 2 1 5 5 C 1.34760 * 108.02302 * 359.72850 * 4 3 2 6 6 Br 1.89094 * 126.60203 * 180.02562 * 5 4 3 7 7 N 1.35124 * 125.64999 * 179.82751 * 2 1 3 8 8 C 1.46500 * 126.39837 * 359.97152 * 7 2 1 9 9 C 1.50706 * 109.46949 * 269.71890 * 8 7 2 10 10 H 1.07995 * 120.00167 * 359.72205 * 9 8 7 11 11 C 1.37879 * 119.99394 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00338 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99424 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47487 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47233 * 120.00158 * 13 11 9 16 16 H 1.48508 * 109.46883 * 239.99963 * 13 11 9 17 17 H 1.09001 * 109.46790 * 270.17587 * 1 2 3 18 18 H 1.08994 * 109.47193 * 30.17688 * 1 2 3 19 19 H 1.08997 * 109.46951 * 150.18251 * 1 2 3 20 20 H 1.08006 * 125.98565 * 179.74545 * 4 3 2 21 21 H 1.09000 * 109.47175 * 149.71916 * 8 7 2 22 22 H 1.09001 * 109.47297 * 29.71424 * 8 7 2 23 23 H 0.96996 * 119.99730 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2673 1.0605 0.0000 4 6 3.5544 0.6822 -0.0064 5 6 3.5931 -0.6648 -0.0045 6 35 5.1429 -1.7482 -0.0106 7 7 2.2946 -1.0980 0.0033 8 6 1.8430 -2.4917 0.0081 9 6 1.6954 -2.9670 1.4306 10 1 1.9202 -2.2993 2.2491 11 6 1.2784 -4.2560 1.6869 12 7 1.0099 -5.0708 0.6900 13 14 1.0947 -4.8449 3.4501 14 1 1.4561 -3.7448 4.3796 15 1 -0.3120 -5.2551 3.6910 16 1 1.9947 -6.0034 3.6812 17 1 -0.3633 0.0032 1.0277 18 1 -0.3633 0.8883 -0.5165 19 1 -0.3633 -0.8916 -0.5110 20 1 4.4097 1.3418 -0.0119 21 1 2.5751 -3.1126 -0.5083 22 1 0.8818 -2.5639 -0.5007 23 1 0.7169 -5.9776 0.8704 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260171369.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:41 Heat of formation + Delta-G solvation = 47.593209 kcal Electronic energy + Delta-G solvation = -10637.069587 eV Core-core repulsion = 8532.238269 eV Total energy + Delta-G solvation = -2104.831318 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 243.991 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.39279 -34.15241 -32.16387 -31.80349 -29.91220 -27.39796 -25.77433 -23.31260 -20.52573 -19.05650 -16.88989 -16.14968 -14.76996 -14.51610 -13.80497 -13.18116 -12.63091 -12.49662 -12.22633 -11.86322 -11.64652 -11.17818 -10.94554 -10.44980 -10.42798 -10.06457 -9.94164 -9.35090 -8.72910 -8.67362 -7.63507 -6.35847 -4.43578 1.97653 2.57131 3.14942 3.23420 3.28774 3.59579 3.83221 4.23930 4.99768 5.05269 5.61215 5.78972 6.03156 6.15343 6.32447 6.33315 6.85401 7.08441 7.31553 7.57126 7.75215 7.87381 8.58737 8.63304 9.24066 10.72828 Molecular weight = 243.99amu Principal moments of inertia in cm(-1) A = 0.023991 B = 0.011899 C = 0.008846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.800034 B = 2352.654090 C = 3164.498611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.218 3.782 3 N -0.505 5.505 4 C -0.002 4.002 5 C -0.031 4.031 6 Br -0.001 7.001 7 N -0.408 5.408 8 C 0.225 3.775 9 C -0.537 4.537 10 H 0.065 0.935 11 C 0.069 3.931 12 N -0.888 5.888 13 Si 0.905 3.095 14 H -0.270 1.270 15 H -0.280 1.280 16 H -0.280 1.280 17 H 0.079 0.921 18 H 0.080 0.920 19 H 0.077 0.923 20 H 0.168 0.832 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.465 5.357 -2.021 7.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.046 4.046 3 N -0.226 5.226 4 C -0.156 4.156 5 C -0.227 4.227 6 Br 0.081 6.919 7 N -0.087 5.087 8 C 0.106 3.894 9 C -0.575 4.575 10 H 0.083 0.917 11 C -0.135 4.135 12 N -0.525 5.525 13 Si 0.732 3.268 14 H -0.195 1.195 15 H -0.206 1.206 16 H -0.206 1.206 17 H 0.098 0.902 18 H 0.098 0.902 19 H 0.095 0.905 20 H 0.186 0.814 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.596 5.365 -2.068 7.360 hybrid contribution -0.012 -1.194 0.945 1.523 sum 4.584 4.171 -1.123 6.298 Atomic orbital electron populations 1.20110 0.85073 1.03187 1.03551 1.23110 0.95637 0.81457 1.04379 1.70248 1.01280 1.28616 1.22449 1.22037 0.95221 0.90400 1.07899 1.22815 0.85512 0.94429 1.19988 1.96585 1.27651 1.69417 1.98228 1.45953 1.03847 1.10470 1.48408 1.19950 0.97232 0.72423 0.99755 1.21207 1.47441 0.98136 0.90738 0.91655 1.24903 0.94384 0.96016 0.98171 1.69923 1.44437 1.07053 1.31128 0.86312 0.77975 0.78907 0.83638 1.19461 1.20564 1.20559 0.90189 0.90160 0.90468 0.81447 0.92797 0.92808 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.02 10.19 36.01 0.37 -0.65 14 2 C 0.22 4.53 7.90 -155.35 -1.23 3.30 14 3 N -0.51 -10.51 11.25 -10.77 -0.12 -10.63 14 4 C 0.00 -0.03 11.84 -17.77 -0.21 -0.24 14 5 C -0.03 -0.64 7.37 -16.52 -0.12 -0.77 14 6 Br 0.00 -0.03 33.55 -68.01 -2.28 -2.31 14 7 N -0.41 -9.12 2.74 -113.25 -0.31 -9.43 14 8 C 0.23 5.49 5.54 -5.19 -0.03 5.46 14 9 C -0.54 -14.17 9.39 -34.44 -0.32 -14.49 14 10 H 0.07 1.79 7.81 -52.49 -0.41 1.38 14 11 C 0.07 1.83 5.46 -17.82 -0.10 1.73 14 12 N -0.89 -24.24 13.29 55.43 0.74 -23.51 14 13 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 14 14 H -0.27 -6.17 7.11 56.52 0.40 -5.77 14 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 14 16 H -0.28 -6.33 7.11 56.52 0.40 -5.92 14 17 H 0.08 1.29 8.14 -51.93 -0.42 0.87 14 18 H 0.08 1.14 8.14 -51.93 -0.42 0.71 14 19 H 0.08 1.27 7.06 -51.93 -0.37 0.90 14 20 H 0.17 2.71 8.06 -52.48 -0.42 2.29 14 21 H 0.05 1.39 7.79 -51.93 -0.40 0.98 14 22 H 0.05 1.32 7.04 -51.93 -0.37 0.96 14 23 H 0.27 6.91 8.31 -40.82 -0.34 6.57 14 LS Contribution 231.73 15.07 3.49 3.49 Total: -1.00 -28.25 231.73 -7.10 -35.35 By element: Atomic # 1 Polarization: -0.92 SS G_CDS: -1.95 Total: -2.87 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -1.64 Total: -5.66 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.31 Total: -43.56 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -2.28 Total: -2.31 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -28.25 -7.10 -35.35 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260171369.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.939 kcal (2) G-P(sol) polarization free energy of solvation -28.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds