Wall clock time and date at job start Mon Mar 30 2020 04:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30489 * 125.63740 * 2 1 4 4 C 1.34154 * 109.25964 * 180.29111 * 3 2 1 5 5 C 1.34760 * 108.02302 * 359.72850 * 4 3 2 6 6 Br 1.89094 * 126.60203 * 180.02562 * 5 4 3 7 7 N 1.35124 * 125.64999 * 179.82751 * 2 1 3 8 8 C 1.46500 * 126.39837 * 359.97152 * 7 2 1 9 9 C 1.50706 * 109.46949 * 269.71890 * 8 7 2 10 10 H 1.07995 * 120.00167 * 359.72205 * 9 8 7 11 11 C 1.37879 * 119.99394 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00338 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99424 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47487 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47233 * 120.00158 * 13 11 9 16 16 H 1.48508 * 109.46883 * 239.99963 * 13 11 9 17 17 H 1.09001 * 109.46790 * 270.17587 * 1 2 3 18 18 H 1.08994 * 109.47193 * 30.17688 * 1 2 3 19 19 H 1.08997 * 109.46951 * 150.18251 * 1 2 3 20 20 H 1.08006 * 125.98565 * 179.74545 * 4 3 2 21 21 H 1.09000 * 109.47175 * 149.71916 * 8 7 2 22 22 H 1.09001 * 109.47297 * 29.71424 * 8 7 2 23 23 H 0.96996 * 119.99730 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2673 1.0605 0.0000 4 6 3.5544 0.6822 -0.0064 5 6 3.5931 -0.6648 -0.0045 6 35 5.1429 -1.7482 -0.0106 7 7 2.2946 -1.0980 0.0033 8 6 1.8430 -2.4917 0.0081 9 6 1.6954 -2.9670 1.4306 10 1 1.9202 -2.2993 2.2491 11 6 1.2784 -4.2560 1.6869 12 7 1.0099 -5.0708 0.6900 13 14 1.0947 -4.8449 3.4501 14 1 1.4561 -3.7448 4.3796 15 1 -0.3120 -5.2551 3.6910 16 1 1.9947 -6.0034 3.6812 17 1 -0.3633 0.0032 1.0277 18 1 -0.3633 0.8883 -0.5165 19 1 -0.3633 -0.8916 -0.5110 20 1 4.4097 1.3418 -0.0119 21 1 2.5751 -3.1126 -0.5083 22 1 0.8818 -2.5639 -0.5007 23 1 0.7169 -5.9776 0.8704 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260171369.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:40 Heat of formation + Delta-G solvation = 31.862780 kcal Electronic energy + Delta-G solvation = -10637.751710 eV Core-core repulsion = 8532.238269 eV Total energy + Delta-G solvation = -2105.513441 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 243.991 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.99739 -36.02237 -34.02225 -33.31647 -31.38500 -29.30324 -27.28318 -25.23769 -22.12646 -20.69517 -18.88028 -17.84943 -16.55097 -16.25595 -15.38902 -14.76723 -14.43956 -14.03846 -13.72481 -13.57787 -13.12899 -13.01388 -12.73284 -12.35127 -11.93740 -11.90424 -11.56307 -10.94552 -10.73244 -10.43020 -9.19774 -8.36876 -6.51729 0.43226 0.96122 1.36428 1.39686 1.50811 2.02181 2.13816 2.36255 2.96874 3.59476 4.07841 4.26702 4.61894 4.66386 4.78034 4.86810 5.05962 5.45701 5.51352 5.66280 5.76253 6.18571 6.58141 7.00307 7.19829 8.71899 Molecular weight = 243.99amu Principal moments of inertia in cm(-1) A = 0.023991 B = 0.011899 C = 0.008846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.800034 B = 2352.654090 C = 3164.498611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.209 3.791 3 N -0.516 5.516 4 C 0.004 3.996 5 C -0.057 4.057 6 Br 0.014 6.986 7 N -0.425 5.425 8 C 0.242 3.758 9 C -0.547 4.547 10 H 0.051 0.949 11 C 0.029 3.971 12 N -0.914 5.914 13 Si 0.965 3.035 14 H -0.272 1.272 15 H -0.270 1.270 16 H -0.275 1.275 17 H 0.085 0.915 18 H 0.107 0.893 19 H 0.075 0.925 20 H 0.200 0.800 21 H 0.036 0.964 22 H 0.047 0.953 23 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.392 5.752 -1.421 7.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.055 4.055 3 N -0.237 5.237 4 C -0.149 4.149 5 C -0.252 4.252 6 Br 0.097 6.903 7 N -0.105 5.105 8 C 0.122 3.878 9 C -0.585 4.585 10 H 0.069 0.931 11 C -0.173 4.173 12 N -0.553 5.553 13 Si 0.789 3.211 14 H -0.197 1.197 15 H -0.195 1.195 16 H -0.201 1.201 17 H 0.104 0.896 18 H 0.126 0.874 19 H 0.094 0.906 20 H 0.216 0.784 21 H 0.054 0.946 22 H 0.065 0.935 23 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.534 5.779 -1.476 7.492 hybrid contribution 0.051 -1.267 0.725 1.461 sum 4.585 4.511 -0.751 6.476 Atomic orbital electron populations 1.20259 0.82781 1.04466 1.04281 1.23898 0.97166 0.81011 1.03382 1.70304 1.01865 1.28515 1.22981 1.22588 0.95783 0.90403 1.06121 1.23243 0.85691 0.95417 1.20814 1.96575 1.26321 1.69191 1.98220 1.45936 1.04828 1.09941 1.49828 1.19529 0.96264 0.73511 0.98480 1.21284 1.47720 0.98284 0.91200 0.93117 1.25623 0.93884 0.96015 1.01753 1.69995 1.44872 1.07487 1.32896 0.85394 0.78352 0.78222 0.79103 1.19697 1.19522 1.20086 0.89624 0.87444 0.90589 0.78353 0.94609 0.93504 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.91 10.19 71.24 0.73 -1.19 14 2 C 0.21 8.45 7.90 138.11 1.09 9.55 14 3 N -0.52 -20.63 11.25 -187.99 -2.12 -22.74 14 4 C 0.00 0.16 11.84 83.54 0.99 1.15 14 5 C -0.06 -2.32 7.37 83.10 0.61 -1.71 14 6 Br 0.01 0.52 33.55 -20.37 -0.68 -0.17 14 7 N -0.43 -18.85 2.74 -512.21 -1.40 -20.25 14 8 C 0.24 11.86 5.54 85.63 0.47 12.33 14 9 C -0.55 -28.79 9.39 25.60 0.24 -28.55 14 10 H 0.05 2.78 7.81 -2.91 -0.02 2.75 14 11 C 0.03 1.51 5.46 84.66 0.46 1.97 14 12 N -0.91 -49.60 13.29 21.45 0.28 -49.32 14 13 Si 0.96 41.55 29.54 68.60 2.03 43.58 14 14 H -0.27 -11.73 7.11 99.48 0.71 -11.03 14 15 H -0.27 -11.16 7.11 99.48 0.71 -10.45 14 16 H -0.28 -11.61 7.11 99.48 0.71 -10.91 14 17 H 0.09 2.64 8.14 -2.39 -0.02 2.62 14 18 H 0.11 2.81 8.14 -2.39 -0.02 2.79 14 19 H 0.08 2.44 7.06 -2.39 -0.02 2.42 14 20 H 0.20 5.93 8.06 -2.91 -0.02 5.90 14 21 H 0.04 1.87 7.79 -2.39 -0.02 1.85 14 22 H 0.05 2.33 7.04 -2.39 -0.02 2.32 14 23 H 0.27 13.88 8.31 -92.71 -0.77 13.11 14 Total: -1.00 -57.89 231.73 3.92 -53.97 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: 1.21 Total: 1.38 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 4.60 Total: -6.44 kcal Atomic # 7 Polarization: -89.08 SS G_CDS: -3.23 Total: -92.31 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 35 Polarization: 0.52 SS G_CDS: -0.68 Total: -0.17 kcal Total: -57.89 3.92 -53.97 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260171369.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.829 kcal (2) G-P(sol) polarization free energy of solvation -57.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds