Wall clock time and date at job start Mon Mar 30 2020 04:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99831 * 2 1 4 4 H 1.48500 * 109.46855 * 269.99441 * 3 2 1 5 5 H 1.48499 * 109.47326 * 29.99771 * 3 2 1 6 6 H 1.48497 * 109.46885 * 149.99643 * 3 2 1 7 7 C 1.37871 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00081 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.47001 * 179.97438 * 9 7 2 11 11 C 1.38548 * 119.97354 * 90.00196 * 10 9 7 12 12 O 1.36068 * 120.02037 * 0.02562 * 11 10 9 13 13 C 1.39115 * 119.96625 * 180.02562 * 11 10 9 14 14 O 1.36013 * 120.03300 * 180.02562 * 13 11 10 15 15 C 1.38553 * 119.93600 * 359.97438 * 13 11 10 16 16 C 1.38636 * 119.95582 * 359.97438 * 15 13 11 17 17 O 1.36001 * 119.98844 * 180.02562 * 16 15 13 18 18 C 1.38298 * 119.98130 * 269.72469 * 10 9 7 19 19 Cl 1.73598 * 119.96440 * 359.97438 * 18 10 9 20 20 H 0.96998 * 119.99944 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.46978 * 60.00053 * 9 7 2 22 22 H 1.09000 * 109.46976 * 299.99298 * 9 7 2 23 23 H 0.96701 * 113.99664 * 90.00173 * 12 11 10 24 24 H 0.96700 * 114.00381 * 89.99820 * 14 13 11 25 25 H 1.07994 * 120.02457 * 180.02562 * 15 13 11 26 26 H 0.96702 * 113.99650 * 89.99643 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6801 -4.1708 1.2007 12 8 2.2375 -3.6539 2.3790 13 6 3.5845 -5.2278 1.2005 14 8 4.0266 -5.7457 2.3780 15 6 4.0338 -5.7532 -0.0002 16 6 3.5810 -5.2251 -1.1995 17 8 4.0211 -5.7407 -2.3785 18 6 2.6751 -4.1736 -1.1974 19 17 2.1041 -3.5179 -2.6999 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5570 -0.8897 22 1 0.6241 -2.5567 0.8904 23 1 1.4383 -4.0789 2.7194 24 1 3.4832 -6.4698 2.7179 25 1 4.7356 -6.5740 -0.0020 26 1 3.4772 -6.4642 -2.7188 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260355399.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:10 Heat of formation + Delta-G solvation = -114.500368 kcal Electronic energy + Delta-G solvation = -15421.357388 eV Core-core repulsion = 12491.632100 eV Total energy + Delta-G solvation = -2929.725288 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 244.033 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.09611 -37.93354 -36.81526 -35.96102 -34.86663 -33.09199 -30.81760 -28.11064 -27.09830 -23.60639 -22.22185 -21.03034 -18.32589 -18.08399 -17.00753 -16.62803 -16.40974 -15.56646 -14.76668 -14.46636 -14.25809 -13.29615 -13.13067 -12.57619 -12.48555 -11.81072 -11.53982 -11.26597 -10.90132 -10.83548 -10.58485 -10.45967 -10.21821 -9.99511 -9.59137 -9.39351 -8.38352 -8.06607 -7.99281 -6.02076 -4.03348 1.24048 1.47789 2.71993 3.34952 3.40232 3.45750 3.59715 4.09853 4.47704 4.49903 4.58013 5.14556 5.34631 5.65472 5.77636 6.07437 6.16778 6.36963 6.52594 6.86763 7.45251 7.54710 7.64781 7.70380 7.92777 8.15766 8.29075 8.97697 9.58924 11.08587 Molecular weight = 244.03amu Principal moments of inertia in cm(-1) A = 0.022499 B = 0.009346 C = 0.007397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.178402 B = 2995.107053 C = 3784.635941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.497 4.497 8 H 0.055 0.945 9 C 0.053 3.947 10 C -0.028 4.028 11 C 0.081 3.919 12 O -0.467 6.467 13 C 0.092 3.908 14 O -0.486 6.486 15 C -0.173 4.173 16 C 0.115 3.885 17 O -0.486 6.486 18 C -0.060 4.060 19 Cl -0.046 7.046 20 H 0.261 0.739 21 H 0.043 0.957 22 H 0.035 0.965 23 H 0.378 0.622 24 H 0.383 0.617 25 H 0.138 0.862 26 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.482 -13.829 -0.247 14.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.140 4.140 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.535 4.535 8 H 0.073 0.927 9 C 0.017 3.983 10 C -0.029 4.029 11 C 0.035 3.965 12 O -0.275 6.275 13 C 0.047 3.953 14 O -0.295 6.295 15 C -0.193 4.193 16 C 0.070 3.930 17 O -0.295 6.295 18 C -0.088 4.088 19 Cl -0.016 7.016 20 H 0.071 0.929 21 H 0.061 0.939 22 H 0.053 0.947 23 H 0.233 0.767 24 H 0.238 0.762 25 H 0.156 0.844 26 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 3.657 -12.421 -0.433 12.956 hybrid contribution -0.633 -0.036 -0.032 0.635 sum 3.024 -12.457 -0.465 12.827 Atomic orbital electron populations 1.69941 1.05930 1.26761 1.50839 1.24908 0.94870 0.99058 0.95155 0.86537 0.79941 0.83132 0.78169 1.20575 1.21156 1.19774 1.20826 0.92831 0.89231 1.50618 0.92677 1.18371 0.92175 0.88609 0.99180 1.20846 0.96968 0.95884 0.89229 1.18451 0.97295 0.94592 0.86151 1.85041 1.46855 1.61088 1.34521 1.18599 0.96981 0.94433 0.85320 1.84924 1.54414 1.54305 1.35847 1.21186 1.04341 1.03330 0.90400 1.17893 0.95063 0.94601 0.85484 1.84891 1.54536 1.54609 1.35501 1.21120 1.00250 0.98632 0.88750 1.98348 1.87717 1.85290 1.30292 0.92903 0.93939 0.94671 0.76693 0.76238 0.84432 0.75882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.35 13.29 55.43 0.74 -25.61 15 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 15 3 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 15 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 15 6 H -0.27 -6.77 7.11 56.52 0.40 -6.37 15 7 C -0.50 -14.09 9.09 -34.44 -0.31 -14.40 15 8 H 0.05 1.61 7.74 -52.48 -0.41 1.20 15 9 C 0.05 1.34 4.49 -29.03 -0.13 1.21 15 10 C -0.03 -0.59 5.08 -104.48 -0.53 -1.12 15 11 C 0.08 1.55 6.69 -39.14 -0.26 1.29 15 12 O -0.47 -8.79 12.32 -34.57 -0.43 -9.21 15 13 C 0.09 1.51 6.71 -39.14 -0.26 1.24 15 14 O -0.49 -6.82 13.28 -34.39 -0.46 -7.28 15 15 C -0.17 -2.63 9.92 -39.32 -0.39 -3.02 15 16 C 0.12 1.90 6.69 -39.23 -0.26 1.64 15 17 O -0.49 -6.83 12.95 -19.75 -0.26 -7.09 15 18 C -0.06 -1.17 6.33 -39.35 -0.25 -1.42 15 19 Cl -0.05 -0.89 26.82 -51.86 -1.39 -2.28 15 20 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 21 H 0.04 1.11 6.88 -51.93 -0.36 0.76 15 22 H 0.04 0.91 7.52 -51.93 -0.39 0.52 15 23 H 0.38 5.00 9.07 45.56 0.41 5.41 15 24 H 0.38 3.10 9.06 45.56 0.41 3.51 15 25 H 0.14 1.73 8.06 -52.49 -0.42 1.31 15 26 H 0.39 3.39 9.06 45.56 0.41 3.80 15 LS Contribution 255.69 15.07 3.85 3.85 Total: -1.00 -34.33 255.69 -4.93 -39.26 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: 0.53 Total: 4.11 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -2.50 Total: -12.93 kcal Atomic # 7 Polarization: -26.35 SS G_CDS: 0.74 Total: -25.61 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -1.14 Total: -23.58 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.39 Total: -2.28 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -34.33 -4.93 -39.26 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260355399.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.239 kcal (2) G-P(sol) polarization free energy of solvation -34.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds