Wall clock time and date at job start Mon Mar 30 2020 04:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99831 * 2 1 4 4 H 1.48500 * 109.46855 * 269.99441 * 3 2 1 5 5 H 1.48499 * 109.47326 * 29.99771 * 3 2 1 6 6 H 1.48497 * 109.46885 * 149.99643 * 3 2 1 7 7 C 1.37871 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00081 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.47001 * 179.97438 * 9 7 2 11 11 C 1.38548 * 119.97354 * 90.00196 * 10 9 7 12 12 O 1.36068 * 120.02037 * 0.02562 * 11 10 9 13 13 C 1.39115 * 119.96625 * 180.02562 * 11 10 9 14 14 O 1.36013 * 120.03300 * 180.02562 * 13 11 10 15 15 C 1.38553 * 119.93600 * 359.97438 * 13 11 10 16 16 C 1.38636 * 119.95582 * 359.97438 * 15 13 11 17 17 O 1.36001 * 119.98844 * 180.02562 * 16 15 13 18 18 C 1.38298 * 119.98130 * 269.72469 * 10 9 7 19 19 Cl 1.73598 * 119.96440 * 359.97438 * 18 10 9 20 20 H 0.96998 * 119.99944 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.46978 * 60.00053 * 9 7 2 22 22 H 1.09000 * 109.46976 * 299.99298 * 9 7 2 23 23 H 0.96701 * 113.99664 * 90.00173 * 12 11 10 24 24 H 0.96700 * 114.00381 * 89.99820 * 14 13 11 25 25 H 1.07994 * 120.02457 * 180.02562 * 15 13 11 26 26 H 0.96702 * 113.99650 * 89.99643 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6801 -4.1708 1.2007 12 8 2.2375 -3.6539 2.3790 13 6 3.5845 -5.2278 1.2005 14 8 4.0266 -5.7457 2.3780 15 6 4.0338 -5.7532 -0.0002 16 6 3.5810 -5.2251 -1.1995 17 8 4.0211 -5.7407 -2.3785 18 6 2.6751 -4.1736 -1.1974 19 17 2.1041 -3.5179 -2.6999 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5570 -0.8897 22 1 0.6241 -2.5567 0.8904 23 1 1.4383 -4.0789 2.7194 24 1 3.4832 -6.4698 2.7179 25 1 4.7356 -6.5740 -0.0020 26 1 3.4772 -6.4642 -2.7188 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260355399.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:10 Heat of formation + Delta-G solvation = -143.142737 kcal Electronic energy + Delta-G solvation = -15422.599414 eV Core-core repulsion = 12491.632100 eV Total energy + Delta-G solvation = -2930.967315 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 244.033 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.42356 -39.15103 -38.10432 -37.37380 -36.29916 -35.05283 -32.48578 -29.49508 -28.83672 -25.49563 -23.54046 -22.54654 -19.61815 -19.42717 -18.53112 -18.22647 -17.95703 -16.96891 -16.52083 -15.97546 -15.51987 -14.71736 -14.52101 -14.31460 -14.21633 -13.42157 -13.23991 -12.79204 -12.74019 -12.54524 -12.16818 -11.96260 -11.94572 -11.55213 -11.40437 -11.03706 -10.56044 -9.57257 -9.31720 -8.18954 -6.27243 -0.07548 0.12190 1.27909 1.37937 1.38292 1.49561 2.26587 2.44282 2.89154 3.13407 3.27185 3.35438 3.86379 4.27560 4.52815 4.69965 4.82779 5.03996 5.11979 5.33640 5.52724 5.66938 5.74651 6.16949 6.66952 6.74167 6.79788 6.99385 7.38239 8.91075 Molecular weight = 244.03amu Principal moments of inertia in cm(-1) A = 0.022499 B = 0.009346 C = 0.007397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.178402 B = 2995.107053 C = 3784.635941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.952 3.048 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.510 4.510 8 H 0.039 0.961 9 C 0.066 3.934 10 C -0.060 4.060 11 C 0.066 3.934 12 O -0.489 6.489 13 C 0.110 3.890 14 O -0.489 6.489 15 C -0.156 4.156 16 C 0.130 3.870 17 O -0.488 6.488 18 C -0.078 4.078 19 Cl -0.059 7.059 20 H 0.265 0.735 21 H 0.023 0.977 22 H 0.015 0.985 23 H 0.398 0.602 24 H 0.412 0.588 25 H 0.175 0.825 26 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.108 -15.264 -0.020 15.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.198 1.198 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.029 3.971 10 C -0.061 4.061 11 C 0.020 3.980 12 O -0.300 6.300 13 C 0.064 3.936 14 O -0.303 6.303 15 C -0.174 4.174 16 C 0.084 3.916 17 O -0.301 6.301 18 C -0.106 4.106 19 Cl -0.030 7.030 20 H 0.073 0.927 21 H 0.041 0.959 22 H 0.033 0.967 23 H 0.256 0.744 24 H 0.272 0.728 25 H 0.192 0.808 26 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 5.256 -13.906 -0.202 14.868 hybrid contribution -1.103 0.253 -0.063 1.133 sum 4.153 -13.653 -0.265 14.273 Atomic orbital electron populations 1.70035 1.07142 1.27670 1.51662 1.25681 0.95710 1.02305 0.94899 0.85633 0.78690 0.79444 0.78469 1.19803 1.20121 1.19772 1.21067 0.92261 0.91173 1.50309 0.94223 1.17987 0.92494 0.89504 0.97098 1.20533 0.98107 0.96280 0.91228 1.18603 0.98385 0.95665 0.85326 1.84961 1.48183 1.62296 1.34525 1.18483 0.95257 0.93266 0.86610 1.84854 1.54938 1.55567 1.34902 1.21498 1.03582 1.03302 0.89054 1.17861 0.93502 0.93417 0.86839 1.84832 1.54916 1.55714 1.34596 1.21291 1.01699 0.99944 0.87653 1.98332 1.88059 1.85758 1.30873 0.92658 0.95926 0.96687 0.74425 0.72837 0.80771 0.72852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.58 13.29 21.45 0.28 -55.30 15 2 C 0.01 0.71 5.46 84.65 0.46 1.18 15 3 Si 0.95 45.94 29.54 68.60 2.03 47.97 15 4 H -0.27 -12.74 7.11 99.48 0.71 -12.04 15 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 15 6 H -0.27 -13.05 7.11 99.48 0.71 -12.34 15 7 C -0.51 -29.69 9.09 25.60 0.23 -29.46 15 8 H 0.04 2.37 7.74 -2.91 -0.02 2.35 15 9 C 0.07 3.45 4.49 29.10 0.13 3.58 15 10 C -0.06 -2.58 5.08 -19.77 -0.10 -2.68 15 11 C 0.07 2.48 6.69 22.55 0.15 2.63 15 12 O -0.49 -18.32 12.32 -80.35 -0.99 -19.31 15 13 C 0.11 3.27 6.71 22.56 0.15 3.42 15 14 O -0.49 -11.90 13.28 -79.73 -1.06 -12.96 15 15 C -0.16 -4.11 9.92 22.44 0.22 -3.89 15 16 C 0.13 3.94 6.69 22.50 0.15 4.09 15 17 O -0.49 -12.12 12.95 -93.57 -1.21 -13.33 15 18 C -0.08 -3.01 6.33 22.42 0.14 -2.87 15 19 Cl -0.06 -2.33 26.82 -2.72 -0.07 -2.40 15 20 H 0.26 14.97 8.31 -92.71 -0.77 14.20 15 21 H 0.02 1.24 6.88 -2.39 -0.02 1.23 15 22 H 0.01 0.82 7.52 -2.39 -0.02 0.80 15 23 H 0.40 10.51 9.07 -74.06 -0.67 9.84 15 24 H 0.41 4.94 9.06 -74.06 -0.67 4.27 15 25 H 0.17 3.37 8.06 -2.91 -0.02 3.35 15 26 H 0.41 5.74 9.06 -74.06 -0.67 5.07 15 Total: -1.00 -74.45 255.69 -0.22 -74.68 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -0.74 Total: 4.65 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: 1.54 Total: -23.99 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.28 Total: -55.30 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: -3.26 Total: -45.60 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Atomic # 17 Polarization: -2.33 SS G_CDS: -0.07 Total: -2.40 kcal Total: -74.45 -0.22 -74.68 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260355399.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.465 kcal (2) G-P(sol) polarization free energy of solvation -74.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds