Wall clock time and date at job start Mon Mar 30 2020 04:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99606 * 2 1 4 4 H 1.48497 * 109.47299 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47283 * 59.99930 * 3 2 1 6 6 H 1.48501 * 109.47119 * 299.99800 * 3 2 1 7 7 C 1.38833 * 120.00503 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00408 * 205.37403 * 7 2 1 9 9 N 1.37486 * 120.00200 * 25.37156 * 7 2 1 10 10 C 1.36519 * 126.54551 * 209.96636 * 9 7 2 11 11 S 1.76207 * 125.89460 * 359.95876 * 10 9 7 12 12 N 1.30791 * 108.20480 * 179.82081 * 10 9 7 13 13 C 1.36037 * 109.57471 * 0.44448 * 12 10 9 14 14 C 1.33158 * 108.17548 * 359.73120 * 13 12 10 15 15 C 1.52255 * 116.59244 * 179.97438 * 14 13 12 16 16 S 1.83418 * 103.05636 * 342.95292 * 15 14 13 17 17 O 1.42096 * 109.47557 * 135.11069 * 16 15 14 18 18 C 1.52457 * 135.54934 * 179.76063 * 13 12 10 19 19 H 0.97000 * 119.99212 * 185.47748 * 1 2 3 20 20 H 1.41000 * 99.99765 * 86.54649 * 11 10 9 21 21 H 1.09002 * 110.69779 * 101.32687 * 15 14 13 22 22 H 1.08998 * 110.69587 * 224.54428 * 15 14 13 23 23 H 1.09006 * 110.68628 * 315.51286 * 18 13 12 24 24 H 1.08994 * 110.69072 * 78.69398 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3466 -0.0006 5 1 1.8893 2.3965 1.2124 6 1 1.8893 2.3965 -1.2125 7 6 2.0084 -1.2023 0.0005 8 1 3.0103 -1.2472 0.4014 9 7 1.4206 -2.3358 -0.5091 10 6 1.6530 -3.6210 -0.1116 11 16 2.7693 -4.1247 1.1552 12 7 0.9017 -4.4135 -0.8315 13 6 0.1754 -3.6757 -1.7139 14 6 0.4803 -2.3923 -1.5321 15 6 -0.2306 -1.3891 -2.4300 16 16 -0.8752 -2.4355 -3.7915 17 8 -2.2206 -2.0735 -4.0710 18 6 -0.8506 -3.9783 -2.8002 19 1 -0.4849 -0.8363 0.0802 20 1 1.9296 -4.0086 2.2819 21 1 -1.0485 -0.9057 -1.8956 22 1 0.4721 -0.6487 -2.8124 23 1 -0.5284 -4.8226 -3.4097 24 1 -1.8301 -4.1699 -2.3622 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260617143.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:41 Heat of formation + Delta-G solvation = 26.933255 kcal Electronic energy + Delta-G solvation = -13654.435207 eV Core-core repulsion = 11207.932270 eV Total energy + Delta-G solvation = -2446.502938 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 244.008 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.84882 -35.33386 -34.57271 -32.81344 -30.76407 -28.11132 -25.13099 -24.66654 -20.72026 -19.43659 -18.39805 -17.14115 -16.51412 -15.69535 -15.07306 -14.44402 -14.19410 -14.14595 -13.71365 -13.33735 -12.59659 -12.49709 -12.04924 -11.86855 -11.52168 -11.31040 -10.62132 -10.55356 -10.45293 -9.76857 -9.68371 -8.97383 -8.62503 -8.20732 -7.62666 -7.45504 -7.29755 -4.81945 2.06506 2.18024 2.51698 2.72407 2.99540 3.03928 3.21459 3.30087 3.76544 3.87423 4.12283 4.34817 4.58380 5.30451 5.68909 5.79806 5.95960 6.10113 6.42020 6.51119 6.90375 7.45321 7.48728 7.71967 8.36615 8.77114 8.98436 9.85509 Molecular weight = 244.01amu Principal moments of inertia in cm(-1) A = 0.018567 B = 0.012791 C = 0.007949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.716177 B = 2188.575490 C = 3521.749819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.028 3.972 3 Si 1.085 2.915 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.272 1.272 7 C -0.421 4.421 8 H 0.120 0.880 9 N -0.224 5.224 10 C 0.103 3.897 11 S -0.038 6.038 12 N -0.460 5.460 13 C -0.027 4.027 14 C -0.053 4.053 15 C -0.312 4.312 16 S 1.222 4.778 17 O -0.865 6.865 18 C -0.315 4.315 19 H 0.288 0.712 20 H 0.073 0.927 21 H 0.106 0.894 22 H 0.116 0.884 23 H 0.118 0.882 24 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.367 -0.951 -4.590 6.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.189 4.189 3 Si 0.907 3.093 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.197 1.197 7 C -0.551 4.551 8 H 0.137 0.863 9 N 0.109 4.891 10 C -0.259 4.259 11 S 0.115 5.885 12 N -0.183 5.183 13 C -0.167 4.167 14 C -0.180 4.180 15 C -0.451 4.451 16 S 1.421 4.579 17 O -0.860 6.860 18 C -0.454 4.454 19 H 0.101 0.899 20 H 0.038 0.962 21 H 0.124 0.876 22 H 0.134 0.866 23 H 0.137 0.863 24 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.665 -0.165 -4.962 6.812 hybrid contribution -2.345 -0.379 2.161 3.211 sum 2.320 -0.543 -2.801 3.677 Atomic orbital electron populations 1.70636 1.07537 1.32897 1.32749 1.26955 0.95767 1.03385 0.92788 0.83289 0.75165 0.72544 0.78296 1.19715 1.20346 1.19711 1.21096 1.03035 0.86401 1.44584 0.86257 1.42023 1.23153 1.06006 1.17929 1.23282 1.11313 0.82816 1.08524 1.85923 1.15266 1.87268 1.00044 1.70377 1.08007 1.32477 1.07487 1.20027 1.03594 0.90022 1.03076 1.20499 1.04322 0.94801 0.98344 1.26494 1.05425 1.05398 1.07783 1.70661 1.00005 0.88013 0.99237 1.93058 1.36910 1.78862 1.77207 1.26239 1.00344 1.14943 1.03856 0.89937 0.96214 0.87606 0.86604 0.86329 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.79 11.53 55.49 0.64 -20.15 14 2 C 0.03 0.66 4.92 -17.51 -0.09 0.58 14 3 Si 1.08 20.33 29.99 -169.99 -5.10 15.24 14 4 H -0.27 -4.78 7.11 56.52 0.40 -4.38 14 5 H -0.28 -5.18 7.11 56.52 0.40 -4.78 14 6 H -0.27 -4.98 7.11 56.52 0.40 -4.58 14 7 C -0.42 -10.33 9.56 -14.80 -0.14 -10.47 14 8 H 0.12 2.84 7.93 -52.48 -0.42 2.42 14 9 N -0.22 -5.60 2.74 -57.31 -0.16 -5.75 14 10 C 0.10 2.52 8.21 -88.77 -0.73 1.79 14 11 S -0.04 -0.77 25.86 -107.50 -2.78 -3.55 14 12 N -0.46 -11.29 11.32 -9.03 -0.10 -11.39 14 13 C -0.03 -0.62 7.58 -81.62 -0.62 -1.24 14 14 C -0.05 -1.23 5.70 -80.31 -0.46 -1.69 14 15 C -0.31 -6.29 5.90 36.78 0.22 -6.08 14 16 S 1.22 19.32 14.88 -107.50 -1.60 17.72 14 17 O -0.87 -18.20 18.15 -35.23 -0.64 -18.84 14 18 C -0.31 -5.57 7.42 36.88 0.27 -5.29 14 19 H 0.29 7.85 6.52 -40.82 -0.27 7.58 14 20 H 0.07 1.42 9.55 96.90 0.93 2.35 14 21 H 0.11 2.41 6.74 -51.93 -0.35 2.06 14 22 H 0.12 2.17 8.14 -51.93 -0.42 1.75 14 23 H 0.12 1.72 8.14 -51.93 -0.42 1.29 14 24 H 0.09 1.68 8.14 -51.93 -0.42 1.26 14 LS Contribution 240.24 15.07 3.62 3.62 Total: -1.00 -32.71 240.24 -7.83 -40.54 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -0.17 Total: 4.98 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: -1.54 Total: -22.41 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.38 Total: -37.30 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.64 Total: -18.84 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.10 Total: 15.24 kcal Atomic # 16 Polarization: 18.56 SS G_CDS: -4.38 Total: 14.18 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -32.71 -7.83 -40.54 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260617143.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.469 kcal (2) G-P(sol) polarization free energy of solvation -32.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds