Wall clock time and date at job start Mon Mar 30 2020 04:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99606 * 2 1 4 4 H 1.48497 * 109.47299 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47283 * 59.99930 * 3 2 1 6 6 H 1.48501 * 109.47119 * 299.99800 * 3 2 1 7 7 C 1.38833 * 120.00503 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00408 * 205.37403 * 7 2 1 9 9 N 1.37486 * 120.00200 * 25.37156 * 7 2 1 10 10 C 1.36519 * 126.54551 * 209.96636 * 9 7 2 11 11 S 1.76207 * 125.89460 * 359.95876 * 10 9 7 12 12 N 1.30791 * 108.20480 * 179.82081 * 10 9 7 13 13 C 1.36037 * 109.57471 * 0.44448 * 12 10 9 14 14 C 1.33158 * 108.17548 * 359.73120 * 13 12 10 15 15 C 1.52255 * 116.59244 * 179.97438 * 14 13 12 16 16 S 1.83418 * 103.05636 * 342.95292 * 15 14 13 17 17 O 1.42096 * 109.47557 * 135.11069 * 16 15 14 18 18 C 1.52457 * 135.54934 * 179.76063 * 13 12 10 19 19 H 0.97000 * 119.99212 * 185.47748 * 1 2 3 20 20 H 1.41000 * 99.99765 * 86.54649 * 11 10 9 21 21 H 1.09002 * 110.69779 * 101.32687 * 15 14 13 22 22 H 1.08998 * 110.69587 * 224.54428 * 15 14 13 23 23 H 1.09006 * 110.68628 * 315.51286 * 18 13 12 24 24 H 1.08994 * 110.69072 * 78.69398 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3466 -0.0006 5 1 1.8893 2.3965 1.2124 6 1 1.8893 2.3965 -1.2125 7 6 2.0084 -1.2023 0.0005 8 1 3.0103 -1.2472 0.4014 9 7 1.4206 -2.3358 -0.5091 10 6 1.6530 -3.6210 -0.1116 11 16 2.7693 -4.1247 1.1552 12 7 0.9017 -4.4135 -0.8315 13 6 0.1754 -3.6757 -1.7139 14 6 0.4803 -2.3923 -1.5321 15 6 -0.2306 -1.3891 -2.4300 16 16 -0.8752 -2.4355 -3.7915 17 8 -2.2206 -2.0735 -4.0710 18 6 -0.8506 -3.9783 -2.8002 19 1 -0.4849 -0.8363 0.0802 20 1 1.9296 -4.0086 2.2819 21 1 -1.0485 -0.9057 -1.8956 22 1 0.4721 -0.6487 -2.8124 23 1 -0.5284 -4.8226 -3.4097 24 1 -1.8301 -4.1699 -2.3622 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260617143.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:40 Heat of formation + Delta-G solvation = 3.659708 kcal Electronic energy + Delta-G solvation = -13655.444424 eV Core-core repulsion = 11207.932270 eV Total energy + Delta-G solvation = -2447.512154 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 244.008 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.63394 -36.97591 -36.38136 -34.49608 -32.58309 -29.67878 -26.90147 -26.41932 -22.51025 -21.17824 -20.14368 -18.62397 -18.15633 -17.47591 -16.73629 -16.03122 -15.76581 -15.70077 -15.33241 -14.99602 -14.29647 -14.02005 -13.72975 -13.62342 -13.08983 -12.90627 -12.28040 -12.16053 -11.90963 -11.45544 -11.33831 -10.78757 -10.46066 -9.77633 -9.32641 -9.18880 -9.06498 -6.72373 0.38844 0.73275 0.94957 1.11805 1.41061 1.51223 1.68405 1.79123 2.11199 2.20119 2.57663 2.69783 2.80662 3.70814 3.97964 4.33727 4.38632 4.57690 4.78130 4.81370 5.10406 5.54682 5.68231 5.89097 6.54380 6.93661 7.16439 7.94221 Molecular weight = 244.01amu Principal moments of inertia in cm(-1) A = 0.018567 B = 0.012791 C = 0.007949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.716177 B = 2188.575490 C = 3521.749819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C -0.001 4.001 3 Si 1.132 2.868 4 H -0.252 1.252 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.440 4.440 8 H 0.122 0.878 9 N -0.244 5.244 10 C 0.075 3.925 11 S -0.007 6.007 12 N -0.482 5.482 13 C -0.035 4.035 14 C -0.068 4.068 15 C -0.328 4.328 16 S 1.344 4.656 17 O -0.906 6.906 18 C -0.323 4.323 19 H 0.267 0.733 20 H 0.078 0.922 21 H 0.077 0.923 22 H 0.126 0.874 23 H 0.158 0.842 24 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.093 -0.799 -5.651 7.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.212 4.212 3 Si 0.948 3.052 4 H -0.175 1.175 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.570 4.570 8 H 0.139 0.861 9 N 0.087 4.913 10 C -0.287 4.287 11 S 0.145 5.855 12 N -0.206 5.206 13 C -0.175 4.175 14 C -0.194 4.194 15 C -0.465 4.465 16 S 1.540 4.460 17 O -0.902 6.902 18 C -0.461 4.461 19 H 0.077 0.923 20 H 0.043 0.957 21 H 0.095 0.905 22 H 0.144 0.856 23 H 0.176 0.824 24 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.394 -0.024 -6.014 8.079 hybrid contribution -2.590 -0.555 2.501 3.643 sum 2.805 -0.579 -3.514 4.533 Atomic orbital electron populations 1.70780 1.08492 1.31358 1.35385 1.28406 0.95556 1.06249 0.91025 0.82758 0.75127 0.68809 0.78539 1.17522 1.20179 1.18820 1.21343 1.03269 0.86826 1.45522 0.86076 1.42302 1.23974 1.06290 1.18686 1.24073 1.11970 0.83083 1.09557 1.85652 1.14158 1.86860 0.98825 1.70393 1.08818 1.33103 1.08325 1.20756 1.03639 0.89808 1.03251 1.21126 1.03806 0.96124 0.98335 1.26749 1.04717 1.06277 1.08784 1.70340 0.96347 0.84440 0.94824 1.92927 1.40266 1.79358 1.77620 1.26500 0.98680 1.17674 1.03293 0.92271 0.95733 0.90474 0.85596 0.82403 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.38 11.53 21.64 0.25 -43.13 14 2 C 0.00 -0.07 4.92 84.90 0.42 0.35 14 3 Si 1.13 39.91 29.99 68.60 2.06 41.97 14 4 H -0.25 -7.97 7.11 99.48 0.71 -7.26 14 5 H -0.28 -9.64 7.11 99.48 0.71 -8.93 14 6 H -0.26 -8.90 7.11 99.48 0.71 -8.19 14 7 C -0.44 -21.65 9.56 83.95 0.80 -20.85 14 8 H 0.12 5.74 7.93 -2.91 -0.02 5.72 14 9 N -0.24 -12.30 2.74 -335.22 -0.92 -13.22 14 10 C 0.08 3.67 8.21 179.70 1.47 5.15 14 11 S -0.01 -0.29 25.86 -56.49 -1.46 -1.75 14 12 N -0.48 -23.52 11.32 -182.47 -2.07 -25.58 14 13 C -0.04 -1.57 7.58 41.33 0.31 -1.25 14 14 C -0.07 -3.17 5.70 40.77 0.23 -2.94 14 15 C -0.33 -13.14 5.90 71.74 0.42 -12.72 14 16 S 1.34 39.53 14.88 -56.49 -0.84 38.69 14 17 O -0.91 -36.26 18.15 -148.98 -2.70 -38.96 14 18 C -0.32 -10.73 7.42 71.80 0.53 -10.20 14 19 H 0.27 14.99 6.52 -92.71 -0.60 14.39 14 20 H 0.08 2.99 9.55 73.80 0.70 3.70 14 21 H 0.08 3.58 6.74 -2.39 -0.02 3.56 14 22 H 0.13 4.66 8.14 -2.39 -0.02 4.64 14 23 H 0.16 3.99 8.14 -2.38 -0.02 3.97 14 24 H 0.08 2.97 8.14 -2.39 -0.02 2.96 14 Total: -1.00 -70.54 240.24 0.64 -69.90 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 2.12 Total: 14.54 kcal Atomic # 6 Polarization: -46.65 SS G_CDS: 4.20 Total: -42.45 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -2.73 Total: -81.93 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -2.70 Total: -38.96 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.06 Total: 41.97 kcal Atomic # 16 Polarization: 39.24 SS G_CDS: -2.30 Total: 36.94 kcal Total: -70.54 0.64 -69.90 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260617143.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.561 kcal (2) G-P(sol) polarization free energy of solvation -70.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds