Wall clock time and date at job start Mon Mar 30 2020 04:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86798 * 120.00112 * 2 1 4 4 H 1.48500 * 109.47391 * 270.00193 * 3 2 1 5 5 H 1.48495 * 109.47062 * 30.00788 * 3 2 1 6 6 H 1.48509 * 109.46996 * 150.00105 * 3 2 1 7 7 C 1.38847 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00374 * 160.50331 * 7 2 1 9 9 N 1.37489 * 119.99650 * 340.50237 * 7 2 1 10 10 C 1.36517 * 126.53760 * 149.77178 * 9 7 2 11 11 S 1.76199 * 125.90073 * 359.97329 * 10 9 7 12 12 N 1.30794 * 108.20105 * 179.70408 * 10 9 7 13 13 C 1.36041 * 109.57356 * 0.27026 * 12 10 9 14 14 C 1.33148 * 108.17788 * 359.97438 * 13 12 10 15 15 C 1.52248 * 116.59603 * 180.02562 * 14 13 12 16 16 S 1.83421 * 103.05339 * 17.06475 * 15 14 13 17 17 O 1.42102 * 109.47152 * 224.88108 * 16 15 14 18 18 C 1.52464 * 135.54713 * 179.97438 * 13 12 10 19 19 H 0.96999 * 119.99886 * 359.97438 * 1 2 3 20 20 H 1.41005 * 99.99628 * 269.71192 * 11 10 9 21 21 H 1.09003 * 110.70479 * 135.45521 * 15 14 13 22 22 H 1.09002 * 110.70200 * 258.67571 * 15 14 13 23 23 H 1.09004 * 110.68602 * 281.30022 * 18 13 12 24 24 H 1.08996 * 110.69146 * 44.47920 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4457 2.6526 0.7002 6 1 3.5458 1.4401 0.7001 7 6 2.0084 -1.2024 -0.0005 8 1 3.0419 -1.2292 -0.3127 9 7 1.3800 -2.3591 0.3964 10 6 1.6461 -3.6222 -0.0479 11 16 2.8651 -4.0622 -1.2417 12 7 0.8439 -4.4501 0.5698 13 6 0.0387 -3.7563 1.4189 14 6 0.3505 -2.4653 1.3252 15 6 -0.4422 -1.5070 2.2034 16 16 -1.1967 -2.6181 3.4528 17 8 -2.5635 -2.2722 3.6303 18 6 -1.0762 -4.1121 2.3962 19 1 -0.4850 0.8400 0.0004 20 1 2.0973 -3.9704 -2.4208 21 1 0.2198 -0.7842 2.6804 22 1 -1.2132 -1.0004 1.6228 23 1 -2.0126 -4.2850 1.8657 24 1 -0.8031 -4.9835 2.9913 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260617146.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:43 Heat of formation + Delta-G solvation = 31.114727 kcal Electronic energy + Delta-G solvation = -13615.139761 eV Core-core repulsion = 11168.818145 eV Total energy + Delta-G solvation = -2446.321615 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 244.008 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.62473 -35.19777 -34.29132 -32.63436 -30.90908 -27.95745 -25.24648 -24.68158 -20.50234 -19.34276 -17.91752 -16.98167 -16.44476 -15.43618 -15.07243 -14.55737 -14.17033 -14.03806 -13.58295 -12.81544 -12.48897 -12.41158 -12.21148 -11.61067 -11.41494 -11.38213 -11.04798 -10.71640 -10.46717 -9.76127 -9.56357 -8.83976 -8.45745 -8.04995 -7.51385 -7.15541 -7.02420 -4.74473 2.16619 2.31951 2.65205 2.78054 2.91900 2.95788 3.01096 3.40845 3.68599 4.01009 4.25782 4.55185 4.65122 5.46569 5.90421 5.92152 6.13942 6.23894 6.64275 6.71441 6.94630 7.15777 7.67904 7.95708 8.43831 8.92198 9.17880 9.97760 Molecular weight = 244.01amu Principal moments of inertia in cm(-1) A = 0.018684 B = 0.012657 C = 0.007875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.212738 B = 2211.752674 C = 3554.893332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.055 3.945 3 Si 0.934 3.066 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.347 4.347 8 H 0.123 0.877 9 N -0.221 5.221 10 C 0.106 3.894 11 S -0.043 6.043 12 N -0.462 5.462 13 C -0.043 4.043 14 C 0.000 4.000 15 C -0.297 4.297 16 S 1.205 4.795 17 O -0.870 6.870 18 C -0.310 4.310 19 H 0.284 0.716 20 H 0.075 0.925 21 H 0.107 0.893 22 H 0.114 0.886 23 H 0.088 0.912 24 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.689 -0.472 4.710 6.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.160 4.160 3 Si 0.757 3.243 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.477 4.477 8 H 0.140 0.860 9 N 0.111 4.889 10 C -0.257 4.257 11 S 0.110 5.890 12 N -0.185 5.185 13 C -0.181 4.181 14 C -0.128 4.128 15 C -0.436 4.436 16 S 1.404 4.596 17 O -0.865 6.865 18 C -0.449 4.449 19 H 0.094 0.906 20 H 0.039 0.961 21 H 0.126 0.874 22 H 0.132 0.868 23 H 0.107 0.893 24 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.010 -1.169 5.033 6.541 hybrid contribution -2.050 2.197 -2.267 3.764 sum 1.960 1.027 2.765 3.542 Atomic orbital electron populations 1.70030 1.06907 1.29652 1.37640 1.25660 0.95346 1.01008 0.93954 0.85815 0.79973 0.79123 0.79402 1.19413 1.19884 1.18107 1.20085 0.97968 0.83027 1.46660 0.85970 1.41807 1.20410 1.05762 1.20875 1.23207 1.09165 0.83456 1.09888 1.85866 1.12609 1.89867 1.00702 1.70352 1.06158 1.32339 1.09686 1.20024 1.02102 0.90483 1.05471 1.20275 0.99124 0.93759 0.99634 1.26369 1.05137 1.05810 1.06295 1.70530 0.97137 0.88984 1.02901 1.93052 1.33677 1.79626 1.80145 1.26172 0.99381 1.13996 1.05365 0.90562 0.96081 0.87433 0.86766 0.89319 0.86616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.06 10.09 55.49 0.56 -19.50 14 2 C 0.05 1.28 5.08 -17.51 -0.09 1.19 14 3 Si 0.93 17.59 29.59 -169.99 -5.03 12.56 14 4 H -0.27 -5.07 7.11 56.52 0.40 -4.67 14 5 H -0.27 -5.11 7.11 56.52 0.40 -4.70 14 6 H -0.26 -4.71 7.11 56.52 0.40 -4.31 14 7 C -0.35 -8.50 9.65 -14.79 -0.14 -8.64 14 8 H 0.12 2.84 7.89 -52.49 -0.41 2.43 14 9 N -0.22 -5.59 2.91 -57.31 -0.17 -5.76 14 10 C 0.11 2.61 8.21 -88.77 -0.73 1.89 14 11 S -0.04 -0.88 25.86 -107.50 -2.78 -3.65 14 12 N -0.46 -11.49 11.32 -9.03 -0.10 -11.59 14 13 C -0.04 -0.98 7.58 -81.62 -0.62 -1.60 14 14 C 0.00 0.00 6.33 -80.31 -0.51 -0.51 14 15 C -0.30 -6.07 5.78 36.77 0.21 -5.86 14 16 S 1.20 19.53 14.88 -107.50 -1.60 17.93 14 17 O -0.87 -18.66 18.15 -35.23 -0.64 -19.29 14 18 C -0.31 -5.65 7.42 36.88 0.27 -5.38 14 19 H 0.28 6.49 8.31 -40.82 -0.34 6.15 14 20 H 0.07 1.45 9.55 96.90 0.93 2.38 14 21 H 0.11 2.02 8.14 -51.93 -0.42 1.59 14 22 H 0.11 2.65 6.89 -51.93 -0.36 2.29 14 23 H 0.09 1.71 8.14 -51.93 -0.42 1.28 14 24 H 0.12 1.73 8.14 -51.93 -0.42 1.30 14 LS Contribution 241.23 15.07 3.64 3.64 Total: -1.00 -32.86 241.23 -7.97 -40.83 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -0.25 Total: 3.75 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -1.60 Total: -18.91 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.29 Total: -36.85 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.64 Total: -19.29 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.56 kcal Atomic # 16 Polarization: 18.65 SS G_CDS: -4.38 Total: 14.27 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -32.86 -7.97 -40.83 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260617146.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.944 kcal (2) G-P(sol) polarization free energy of solvation -32.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds