Wall clock time and date at job start Mon Mar 30 2020 04:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35094 * 126.40582 * 2 1 4 4 Br 1.89108 * 125.66057 * 0.02562 * 3 2 1 5 5 N 1.30588 * 108.67876 * 179.97438 * 3 2 1 6 6 C 1.34181 * 109.25350 * 359.77636 * 5 3 2 7 7 C 1.34611 * 108.04500 * 0.36993 * 6 5 3 8 8 C 1.50700 * 126.58535 * 179.89688 * 7 6 5 9 9 C 1.50702 * 109.46869 * 84.68725 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48496 * 109.47341 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46983 * 120.00379 * 13 11 9 16 16 H 1.48503 * 109.47491 * 240.00192 * 13 11 9 17 17 H 1.08996 * 109.46970 * 270.02143 * 1 2 3 18 18 H 1.09004 * 109.47297 * 30.01757 * 1 2 3 19 19 H 1.08994 * 109.47402 * 150.01930 * 1 2 3 20 20 H 1.08000 * 125.97273 * 180.23914 * 6 5 3 21 21 H 1.09004 * 109.47210 * 324.69018 * 8 7 6 22 22 H 1.08994 * 109.47551 * 204.68670 * 8 7 6 23 23 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2668 1.0873 0.0000 4 35 1.6845 2.8865 0.0007 5 7 3.5106 0.6897 0.0006 6 6 3.5464 -0.6517 0.0059 7 6 2.2781 -1.1026 0.0005 8 6 1.8371 -2.5437 0.0013 9 6 1.8089 -3.0595 1.4170 10 1 2.0824 -2.4087 2.2344 11 6 1.4278 -4.3603 1.6693 12 7 1.0943 -5.1526 0.6740 13 14 1.3854 -4.9973 3.4248 14 1 1.8020 -3.9164 4.3538 15 1 0.0058 -5.4332 3.7600 16 1 2.3139 -6.1488 3.5562 17 1 -0.3633 0.0004 1.0276 18 1 -0.3634 0.8898 -0.5141 19 1 -0.3634 -0.8901 -0.5135 20 1 4.4370 -1.2625 0.0112 21 1 2.5357 -3.1377 -0.5880 22 1 0.8402 -2.6189 -0.4327 23 1 0.8266 -6.0679 0.8514 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260957303.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:25 Heat of formation + Delta-G solvation = 51.975204 kcal Electronic energy + Delta-G solvation = -10495.365152 eV Core-core repulsion = 8390.723852 eV Total energy + Delta-G solvation = -2104.641300 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 243.991 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.47618 -33.78535 -33.33522 -31.67622 -30.06391 -26.70596 -26.21021 -23.11826 -20.62770 -19.26624 -16.60774 -16.36300 -15.23854 -14.63914 -13.89051 -13.24277 -12.68764 -12.53877 -12.37910 -12.04096 -11.50737 -10.97752 -10.82977 -10.68290 -10.47236 -10.08442 -9.60572 -9.42854 -9.05631 -8.56452 -7.57968 -6.18243 -4.23454 1.36660 2.51072 3.22089 3.30562 3.35211 3.40513 3.64288 4.34512 5.10527 5.16748 5.43403 5.50800 5.78057 6.12215 6.32860 6.53912 7.22003 7.33324 7.46608 7.52756 7.77004 8.11723 8.43779 8.81026 9.41922 10.90948 Molecular weight = 243.99amu Principal moments of inertia in cm(-1) A = 0.055195 B = 0.006487 C = 0.006392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.167017 B = 4314.978242 C = 4379.276839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.440 5.440 3 C 0.153 3.847 4 Br 0.033 6.967 5 N -0.455 5.455 6 C -0.053 4.053 7 C 0.066 3.934 8 C 0.082 3.918 9 C -0.516 4.516 10 H 0.059 0.941 11 C 0.061 3.939 12 N -0.892 5.892 13 Si 0.898 3.102 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.281 1.281 17 H 0.079 0.921 18 H 0.079 0.921 19 H 0.095 0.905 20 H 0.173 0.827 21 H 0.049 0.951 22 H 0.029 0.971 23 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.521 12.982 -2.183 13.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.126 5.126 3 C -0.183 4.183 4 Br 0.113 6.887 5 N -0.177 5.177 6 C -0.201 4.201 7 C -0.052 4.052 8 C 0.044 3.956 9 C -0.555 4.555 10 H 0.077 0.923 11 C -0.141 4.141 12 N -0.530 5.530 13 Si 0.725 3.275 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.207 1.207 17 H 0.098 0.902 18 H 0.098 0.902 19 H 0.113 0.887 20 H 0.190 0.810 21 H 0.067 0.933 22 H 0.047 0.953 23 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.263 14.005 -2.228 14.360 hybrid contribution -0.679 -1.311 0.981 1.773 sum -2.942 12.693 -1.248 13.089 Atomic orbital electron populations 1.22044 0.76662 1.04323 1.04058 1.45112 1.07554 1.05431 1.54474 1.23939 0.88488 0.87681 1.18150 1.96616 1.88451 1.05239 1.98353 1.70131 1.17133 1.13018 1.17372 1.22024 0.96776 0.89382 1.11911 1.22603 0.90282 0.91179 1.01090 1.17964 0.97516 0.81552 0.98567 1.21042 1.46103 0.96757 0.91590 0.92283 1.24989 0.94918 0.96671 0.97520 1.69951 1.45101 1.07069 1.30919 0.86432 0.77729 0.78969 0.84340 1.19636 1.20911 1.20705 0.90215 0.90220 0.88653 0.80970 0.93286 0.95290 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.09 10.80 59.85 0.65 1.74 14 2 N -0.44 -8.52 3.16 -119.37 -0.38 -8.89 14 3 C 0.15 2.95 8.38 -90.26 -0.76 2.19 14 4 Br 0.03 0.48 33.39 -68.01 -2.27 -1.79 14 5 N -0.46 -9.66 11.26 -13.04 -0.15 -9.80 14 6 C -0.05 -1.13 11.79 -17.81 -0.21 -1.34 14 7 C 0.07 1.44 6.14 -81.57 -0.50 0.94 14 8 C 0.08 2.00 5.31 -29.03 -0.15 1.84 14 9 C -0.52 -13.81 9.09 -34.44 -0.31 -14.12 14 10 H 0.06 1.61 7.74 -52.49 -0.41 1.21 14 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 14 12 N -0.89 -25.02 13.29 55.43 0.74 -24.28 14 13 Si 0.90 20.83 29.54 -169.99 -5.02 15.80 14 14 H -0.27 -6.29 7.11 56.52 0.40 -5.89 14 15 H -0.28 -6.48 7.11 56.52 0.40 -6.07 14 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 14 17 H 0.08 1.16 8.14 -51.93 -0.42 0.74 14 18 H 0.08 0.98 7.66 -51.93 -0.40 0.58 14 19 H 0.09 1.44 7.12 -51.93 -0.37 1.07 14 20 H 0.17 3.39 8.06 -52.49 -0.42 2.96 14 21 H 0.05 1.25 8.14 -51.93 -0.42 0.82 14 22 H 0.03 0.72 7.10 -51.93 -0.37 0.35 14 23 H 0.26 6.99 8.31 -40.82 -0.34 6.65 14 LS Contribution 231.18 15.07 3.48 3.48 Total: -1.00 -29.42 231.18 -6.93 -36.34 By element: Atomic # 1 Polarization: -1.71 SS G_CDS: -1.95 Total: -3.65 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -1.39 Total: -7.20 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 0.21 Total: -42.98 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 35 Polarization: 0.48 SS G_CDS: -2.27 Total: -1.79 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -29.42 -6.93 -36.34 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260957303.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.316 kcal (2) G-P(sol) polarization free energy of solvation -29.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds