Wall clock time and date at job start Mon Mar 30 2020 04:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35094 * 126.40582 * 2 1 4 4 Br 1.89108 * 125.66057 * 0.02562 * 3 2 1 5 5 N 1.30588 * 108.67876 * 179.97438 * 3 2 1 6 6 C 1.34181 * 109.25350 * 359.77636 * 5 3 2 7 7 C 1.34611 * 108.04500 * 0.36993 * 6 5 3 8 8 C 1.50700 * 126.58535 * 179.89688 * 7 6 5 9 9 C 1.50702 * 109.46869 * 84.68725 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48496 * 109.47341 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46983 * 120.00379 * 13 11 9 16 16 H 1.48503 * 109.47491 * 240.00192 * 13 11 9 17 17 H 1.08996 * 109.46970 * 270.02143 * 1 2 3 18 18 H 1.09004 * 109.47297 * 30.01757 * 1 2 3 19 19 H 1.08994 * 109.47402 * 150.01930 * 1 2 3 20 20 H 1.08000 * 125.97273 * 180.23914 * 6 5 3 21 21 H 1.09004 * 109.47210 * 324.69018 * 8 7 6 22 22 H 1.08994 * 109.47551 * 204.68670 * 8 7 6 23 23 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2668 1.0873 0.0000 4 35 1.6845 2.8865 0.0007 5 7 3.5106 0.6897 0.0006 6 6 3.5464 -0.6517 0.0059 7 6 2.2781 -1.1026 0.0005 8 6 1.8371 -2.5437 0.0013 9 6 1.8089 -3.0595 1.4170 10 1 2.0824 -2.4087 2.2344 11 6 1.4278 -4.3603 1.6693 12 7 1.0943 -5.1526 0.6740 13 14 1.3854 -4.9973 3.4248 14 1 1.8020 -3.9164 4.3538 15 1 0.0058 -5.4332 3.7600 16 1 2.3139 -6.1488 3.5562 17 1 -0.3633 0.0004 1.0276 18 1 -0.3634 0.8898 -0.5141 19 1 -0.3634 -0.8901 -0.5135 20 1 4.4370 -1.2625 0.0112 21 1 2.5357 -3.1377 -0.5880 22 1 0.8402 -2.6189 -0.4327 23 1 0.8266 -6.0679 0.8514 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260957303.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:25 Heat of formation + Delta-G solvation = 34.759673 kcal Electronic energy + Delta-G solvation = -10496.111674 eV Core-core repulsion = 8390.723852 eV Total energy + Delta-G solvation = -2105.387822 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 243.991 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.04148 -35.61643 -34.97438 -33.24444 -31.77445 -28.32204 -27.77517 -25.05771 -22.19223 -20.86817 -18.60936 -17.92906 -16.79007 -16.53576 -15.42897 -14.81726 -14.41531 -14.11592 -13.95683 -13.55852 -13.35246 -12.77310 -12.65765 -12.11329 -12.04077 -11.69163 -11.53990 -11.11023 -10.62892 -10.57283 -9.22909 -8.23360 -6.36515 -0.07618 0.93256 1.39642 1.42647 1.54142 1.94862 2.00616 2.40891 3.08611 3.81796 3.91591 4.31105 4.43519 4.56142 4.67997 4.92481 5.25190 5.59358 5.66438 5.69044 5.97838 6.13030 6.72662 6.83850 7.32705 8.85154 Molecular weight = 243.99amu Principal moments of inertia in cm(-1) A = 0.055195 B = 0.006487 C = 0.006392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.167017 B = 4314.978242 C = 4379.276839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.440 5.440 3 C 0.157 3.843 4 Br 0.083 6.917 5 N -0.480 5.480 6 C -0.059 4.059 7 C 0.041 3.959 8 C 0.096 3.904 9 C -0.529 4.529 10 H 0.049 0.951 11 C 0.015 3.985 12 N -0.922 5.922 13 Si 0.962 3.038 14 H -0.271 1.271 15 H -0.275 1.275 16 H -0.276 1.276 17 H 0.088 0.912 18 H 0.112 0.888 19 H 0.092 0.908 20 H 0.179 0.821 21 H 0.029 0.971 22 H 0.019 0.981 23 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.169 14.126 -1.483 14.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.125 5.125 3 C -0.180 4.180 4 Br 0.163 6.837 5 N -0.202 5.202 6 C -0.207 4.207 7 C -0.077 4.077 8 C 0.057 3.943 9 C -0.567 4.567 10 H 0.067 0.933 11 C -0.184 4.184 12 N -0.562 5.562 13 Si 0.787 3.213 14 H -0.196 1.196 15 H -0.200 1.200 16 H -0.202 1.202 17 H 0.106 0.894 18 H 0.131 0.869 19 H 0.110 0.890 20 H 0.196 0.804 21 H 0.047 0.953 22 H 0.038 0.962 23 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.926 15.148 -1.533 15.504 hybrid contribution -0.513 -1.523 0.725 1.763 sum -3.439 13.625 -0.808 14.076 Atomic orbital electron populations 1.22341 0.74422 1.05851 1.05086 1.45290 1.08949 1.04735 1.53547 1.24709 0.88143 0.89726 1.15429 1.96666 1.87813 1.01079 1.98171 1.70154 1.18438 1.12643 1.18924 1.22230 0.97027 0.90010 1.11465 1.22175 0.91029 0.90858 1.03676 1.17618 0.96384 0.83141 0.97112 1.21244 1.46085 0.97020 0.92395 0.93273 1.25759 0.94454 0.96833 1.01363 1.70041 1.45770 1.07494 1.32864 0.85441 0.78043 0.78254 0.79570 1.19565 1.20018 1.20194 0.89394 0.86930 0.88968 0.80362 0.95269 0.96235 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.84 10.80 127.77 1.38 3.22 14 2 N -0.44 -16.58 3.16 -531.59 -1.68 -18.26 14 3 C 0.16 5.77 8.38 180.22 1.51 7.28 14 4 Br 0.08 2.17 33.39 -20.37 -0.68 1.49 14 5 N -0.48 -19.95 11.26 -195.17 -2.20 -22.15 14 6 C -0.06 -2.56 11.79 83.50 0.98 -1.57 14 7 C 0.04 1.79 6.14 40.92 0.25 2.04 14 8 C 0.10 4.76 5.31 29.10 0.15 4.91 14 9 C -0.53 -28.56 9.09 25.60 0.23 -28.33 14 10 H 0.05 2.70 7.74 -2.91 -0.02 2.68 14 11 C 0.02 0.83 5.46 84.66 0.46 1.29 14 12 N -0.92 -52.02 13.29 21.45 0.28 -51.73 14 13 Si 0.96 42.46 29.54 68.60 2.03 44.49 14 14 H -0.27 -11.84 7.11 99.48 0.71 -11.13 14 15 H -0.27 -11.70 7.11 99.48 0.71 -10.99 14 16 H -0.28 -11.93 7.11 99.48 0.71 -11.22 14 17 H 0.09 2.39 8.14 -2.39 -0.02 2.37 14 18 H 0.11 2.44 7.66 -2.39 -0.02 2.42 14 19 H 0.09 2.72 7.12 -2.39 -0.02 2.70 14 20 H 0.18 7.14 8.06 -2.91 -0.02 7.12 14 21 H 0.03 1.54 8.14 -2.38 -0.02 1.52 14 22 H 0.02 0.99 7.10 -2.39 -0.02 0.97 14 23 H 0.27 14.17 8.31 -92.70 -0.77 13.40 14 Total: -1.00 -61.44 231.18 3.94 -57.49 By element: Atomic # 1 Polarization: -1.38 SS G_CDS: 1.21 Total: -0.17 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 4.98 Total: -11.16 kcal Atomic # 7 Polarization: -88.55 SS G_CDS: -3.59 Total: -92.14 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 35 Polarization: 2.17 SS G_CDS: -0.68 Total: 1.49 kcal Total: -61.44 3.94 -57.49 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260957303.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.252 kcal (2) G-P(sol) polarization free energy of solvation -61.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds