Wall clock time and date at job start Mon Mar 30 2020 05:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99644 * 2 1 4 4 H 1.48506 * 109.47039 * 269.99672 * 3 2 1 5 5 H 1.48490 * 109.47341 * 29.99846 * 3 2 1 6 6 H 1.48501 * 109.47302 * 150.00063 * 3 2 1 7 7 C 1.37870 * 120.00411 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00084 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00429 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47233 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46888 * 179.97438 * 10 9 7 12 12 N 1.32506 * 120.38673 * 89.99856 * 11 10 9 13 13 C 1.32258 * 120.91796 * 179.97438 * 12 11 10 14 14 O 1.35476 * 119.15345 * 179.97438 * 13 12 11 15 15 N 1.32318 * 121.69401 * 0.26583 * 13 12 11 16 16 C 1.32742 * 120.67304 * 359.47458 * 15 13 12 17 17 O 1.35524 * 120.48202 * 180.25776 * 16 15 13 18 18 C 1.38264 * 120.38497 * 269.97923 * 11 10 9 19 19 Cl 1.73604 * 120.77293 * 0.04230 * 18 11 10 20 20 H 0.97001 * 120.00048 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.46991 * 59.99693 * 9 7 2 22 22 H 1.09000 * 109.46917 * 300.00033 * 9 7 2 23 23 H 1.08994 * 109.46890 * 60.00080 * 10 9 7 24 24 H 1.08993 * 109.47470 * 299.99584 * 10 9 7 25 25 H 0.96700 * 113.99994 * 90.00463 * 14 13 12 26 26 H 0.96699 * 114.00427 * 270.25279 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5286 -2.6363 0.0009 12 7 6.1989 -2.6364 1.1440 13 6 7.5214 -2.6368 1.1562 14 8 8.1704 -2.6363 2.3454 15 7 8.2270 -2.6320 0.0368 16 6 7.6222 -2.6370 -1.1448 17 8 8.3487 -2.6373 -2.2889 18 6 6.2279 -2.6366 -1.1918 19 17 5.3904 -2.6360 -2.7125 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6799 0.8911 22 1 3.8752 -0.6803 -0.8888 23 1 3.6586 -3.1500 -0.8892 24 1 3.6581 -3.1505 0.8907 25 1 8.3586 -3.5195 2.6911 26 1 8.5598 -1.7541 -2.6211 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261009646.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:57 Heat of formation + Delta-G solvation = -38.504156 kcal Electronic energy + Delta-G solvation = -15108.530404 eV Core-core repulsion = 12214.393310 eV Total energy + Delta-G solvation = -2894.137094 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 244.040 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.42119 -38.38830 -37.34698 -36.51485 -34.62933 -32.98588 -31.53590 -30.04043 -26.38909 -24.14681 -23.09154 -20.81701 -19.33227 -18.75004 -18.13738 -16.88164 -16.34195 -15.89693 -15.57085 -14.40830 -13.67930 -13.48847 -13.31235 -12.71176 -12.58220 -12.12389 -11.98658 -11.74007 -11.33787 -11.21019 -10.97549 -10.88744 -10.15022 -10.00256 -9.88450 -9.38954 -9.20582 -8.97597 -8.59482 -6.10101 -4.09332 0.45140 0.76646 1.94356 2.73455 3.13590 3.27156 3.35413 3.39181 3.53703 4.13487 4.40387 4.64687 4.79788 5.23470 5.24702 5.76837 6.00470 6.16377 6.54166 6.58371 7.04661 7.09386 7.20687 7.26410 7.66973 7.82136 8.44053 8.93120 9.51256 11.02858 Molecular weight = 244.04amu Principal moments of inertia in cm(-1) A = 0.025160 B = 0.007550 C = 0.006632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.589619 B = 3707.591946 C = 4221.177951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.874 3.126 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.077 0.923 9 C 0.000 4.000 10 C -0.069 4.069 11 C 0.242 3.758 12 N -0.512 5.512 13 C 0.518 3.482 14 O -0.453 6.453 15 N -0.549 5.549 16 C 0.392 3.608 17 O -0.464 6.464 18 C -0.176 4.176 19 Cl -0.013 7.013 20 H 0.264 0.736 21 H 0.023 0.977 22 H 0.016 0.984 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.413 0.587 26 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.411 -5.607 -2.612 16.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.701 3.299 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.095 0.905 9 C -0.038 4.038 10 C -0.107 4.107 11 C 0.097 3.903 12 N -0.239 5.239 13 C 0.214 3.786 14 O -0.256 6.256 15 N -0.287 5.287 16 C 0.203 3.797 17 O -0.272 6.272 18 C -0.209 4.209 19 Cl 0.015 6.985 20 H 0.074 0.926 21 H 0.041 0.959 22 H 0.034 0.966 23 H 0.109 0.891 24 H 0.110 0.890 25 H 0.272 0.728 26 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 15.671 -5.483 -1.852 16.705 hybrid contribution 0.262 0.962 -0.833 1.299 sum 15.933 -4.520 -2.685 16.778 Atomic orbital electron populations 1.69892 1.06207 1.27004 1.50641 1.24938 0.94682 0.98973 0.94386 0.86869 0.80511 0.83916 0.78623 1.20126 1.21148 1.19071 1.20967 0.88549 0.94785 1.51463 0.90524 1.19520 0.97751 0.89579 0.96978 1.20943 0.82609 1.02596 1.04504 1.22168 0.99318 0.84419 0.84364 1.68116 1.08283 1.17215 1.30327 1.19976 0.83932 0.90175 0.84540 1.84736 1.76082 1.34331 1.30467 1.67468 1.43181 1.19915 0.98109 1.18773 0.85182 0.90489 0.85212 1.84717 1.73492 1.34483 1.34522 1.22854 0.93058 1.13340 0.91693 1.98400 1.76858 1.96592 1.26620 0.92581 0.95909 0.96608 0.89069 0.89013 0.72770 0.72887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.96 55.43 0.77 -26.32 15 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 15 3 Si 0.87 21.45 27.47 -169.99 -4.67 16.78 15 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 15 6 H -0.27 -6.39 6.54 56.52 0.37 -6.03 15 7 C -0.52 -14.25 9.66 -34.44 -0.33 -14.58 15 8 H 0.08 2.22 7.99 -52.48 -0.42 1.81 15 9 C 0.00 0.00 4.02 -27.88 -0.11 -0.11 15 10 C -0.07 -1.31 5.12 -27.88 -0.14 -1.45 15 11 C 0.24 4.21 6.07 -82.29 -0.50 3.71 15 12 N -0.51 -8.86 10.40 -10.99 -0.11 -8.97 15 13 C 0.52 7.99 8.71 -91.30 -0.80 7.19 15 14 O -0.45 -5.69 13.64 -18.12 -0.25 -5.94 15 15 N -0.55 -8.32 10.49 -14.77 -0.15 -8.47 15 16 C 0.39 5.59 7.83 -16.68 -0.13 5.46 15 17 O -0.46 -5.26 13.12 -18.27 -0.24 -5.50 15 18 C -0.18 -2.73 6.37 -39.10 -0.25 -2.98 15 19 Cl -0.01 -0.20 27.09 -51.86 -1.40 -1.60 15 20 H 0.26 7.47 8.31 -40.82 -0.34 7.13 15 21 H 0.02 0.55 7.20 -51.93 -0.37 0.18 15 22 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 15 23 H 0.09 1.65 7.00 -51.93 -0.36 1.29 15 24 H 0.09 1.73 8.14 -51.93 -0.42 1.31 15 25 H 0.41 2.75 9.06 45.56 0.41 3.16 15 26 H 0.41 2.66 9.06 45.56 0.41 3.07 15 LS Contribution 254.49 15.07 3.84 3.84 Total: -1.00 -32.98 254.49 -4.89 -37.88 By element: Atomic # 1 Polarization: -0.55 SS G_CDS: -0.31 Total: -0.86 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -2.36 Total: -0.82 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.50 Total: -43.77 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -0.49 Total: -11.44 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.40 Total: -1.60 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -32.98 -4.89 -37.88 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261009646.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.627 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds