Wall clock time and date at job start Mon Mar 30 2020 05:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99644 * 2 1 4 4 H 1.48506 * 109.47039 * 269.99672 * 3 2 1 5 5 H 1.48490 * 109.47341 * 29.99846 * 3 2 1 6 6 H 1.48501 * 109.47302 * 150.00063 * 3 2 1 7 7 C 1.37870 * 120.00411 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00084 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00429 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47233 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46888 * 179.97438 * 10 9 7 12 12 N 1.32506 * 120.38673 * 89.99856 * 11 10 9 13 13 C 1.32258 * 120.91796 * 179.97438 * 12 11 10 14 14 O 1.35476 * 119.15345 * 179.97438 * 13 12 11 15 15 N 1.32318 * 121.69401 * 0.26583 * 13 12 11 16 16 C 1.32742 * 120.67304 * 359.47458 * 15 13 12 17 17 O 1.35524 * 120.48202 * 180.25776 * 16 15 13 18 18 C 1.38264 * 120.38497 * 269.97923 * 11 10 9 19 19 Cl 1.73604 * 120.77293 * 0.04230 * 18 11 10 20 20 H 0.97001 * 120.00048 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.46991 * 59.99693 * 9 7 2 22 22 H 1.09000 * 109.46917 * 300.00033 * 9 7 2 23 23 H 1.08994 * 109.46890 * 60.00080 * 10 9 7 24 24 H 1.08993 * 109.47470 * 299.99584 * 10 9 7 25 25 H 0.96700 * 113.99994 * 90.00463 * 14 13 12 26 26 H 0.96699 * 114.00427 * 270.25279 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5286 -2.6363 0.0009 12 7 6.1989 -2.6364 1.1440 13 6 7.5214 -2.6368 1.1562 14 8 8.1704 -2.6363 2.3454 15 7 8.2270 -2.6320 0.0368 16 6 7.6222 -2.6370 -1.1448 17 8 8.3487 -2.6373 -2.2889 18 6 6.2279 -2.6366 -1.1918 19 17 5.3904 -2.6360 -2.7125 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6799 0.8911 22 1 3.8752 -0.6803 -0.8888 23 1 3.6586 -3.1500 -0.8892 24 1 3.6581 -3.1505 0.8907 25 1 8.3586 -3.5195 2.6911 26 1 8.5598 -1.7541 -2.6211 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261009646.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:57 Heat of formation + Delta-G solvation = -69.703567 kcal Electronic energy + Delta-G solvation = -15109.883312 eV Core-core repulsion = 12214.393310 eV Total energy + Delta-G solvation = -2895.490002 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 244.040 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.58796 -39.38501 -38.45698 -37.65253 -36.13294 -34.69938 -33.14309 -31.44225 -28.09899 -25.28378 -24.60047 -22.49645 -20.47333 -19.86965 -19.24869 -18.90351 -17.52863 -17.04032 -16.62101 -16.34054 -15.18510 -15.02706 -14.81721 -14.45645 -13.71571 -13.47249 -13.26258 -13.11898 -12.87007 -12.49262 -12.43651 -12.28916 -11.92887 -11.72213 -11.53209 -11.42747 -10.75846 -10.47401 -10.18348 -8.28338 -6.32019 -0.68069 -0.43729 0.77737 1.34320 1.37343 1.47334 1.67322 2.04291 2.35409 2.37111 2.89472 3.07206 3.50867 3.70750 4.04296 4.46964 4.49737 4.65089 4.92409 5.29107 5.30310 5.51316 5.60734 6.26431 6.29012 6.40375 6.63568 6.74682 7.32076 8.87869 Molecular weight = 244.04amu Principal moments of inertia in cm(-1) A = 0.025160 B = 0.007550 C = 0.006632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.589619 B = 3707.591946 C = 4221.177951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.014 3.986 3 Si 0.936 3.064 4 H -0.262 1.262 5 H -0.283 1.283 6 H -0.256 1.256 7 C -0.524 4.524 8 H 0.045 0.955 9 C 0.007 3.993 10 C -0.060 4.060 11 C 0.231 3.769 12 N -0.535 5.535 13 C 0.523 3.477 14 O -0.455 6.455 15 N -0.552 5.552 16 C 0.409 3.591 17 O -0.460 6.460 18 C -0.180 4.180 19 Cl -0.009 7.009 20 H 0.267 0.733 21 H 0.014 0.986 22 H 0.023 0.977 23 H 0.096 0.904 24 H 0.086 0.914 25 H 0.437 0.563 26 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.757 -5.112 -3.056 18.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.183 4.183 3 Si 0.760 3.240 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.180 1.180 7 C -0.562 4.562 8 H 0.064 0.936 9 C -0.031 4.031 10 C -0.098 4.098 11 C 0.086 3.914 12 N -0.263 5.263 13 C 0.218 3.782 14 O -0.262 6.262 15 N -0.290 5.290 16 C 0.219 3.781 17 O -0.271 6.271 18 C -0.214 4.214 19 Cl 0.020 6.980 20 H 0.076 0.924 21 H 0.032 0.968 22 H 0.042 0.958 23 H 0.115 0.885 24 H 0.105 0.895 25 H 0.301 0.699 26 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges 18.047 -5.002 -2.298 18.868 hybrid contribution -0.408 0.711 -0.697 1.076 sum 17.639 -4.292 -2.995 18.399 Atomic orbital electron populations 1.70031 1.08005 1.28094 1.52438 1.25808 0.95447 1.02860 0.94233 0.85866 0.79396 0.79337 0.79386 1.18661 1.20862 1.18035 1.21287 0.90965 0.93612 1.50364 0.93635 1.19344 0.94763 0.92373 0.96658 1.20653 0.84494 1.00025 1.04642 1.21749 0.98231 0.86032 0.85352 1.68049 1.09387 1.18334 1.30552 1.20066 0.83521 0.89179 0.85392 1.84697 1.75490 1.36570 1.29439 1.67627 1.42913 1.20201 0.98278 1.18783 0.84873 0.88651 0.85773 1.84684 1.72755 1.36445 1.33237 1.22814 0.93645 1.13642 0.91252 1.98401 1.76895 1.96607 1.26124 0.92416 0.96765 0.95844 0.88528 0.89523 0.69888 0.70123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.03 13.96 21.44 0.30 -57.73 15 2 C 0.01 0.81 5.47 84.65 0.46 1.27 15 3 Si 0.94 43.76 27.47 68.60 1.88 45.64 15 4 H -0.26 -11.60 7.11 99.48 0.71 -10.89 15 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 15 6 H -0.26 -11.49 6.54 99.48 0.65 -10.84 15 7 C -0.52 -29.15 9.66 25.60 0.25 -28.90 15 8 H 0.05 2.74 7.99 -2.91 -0.02 2.71 15 9 C 0.01 0.31 4.02 29.85 0.12 0.43 15 10 C -0.06 -2.27 5.12 29.85 0.15 -2.12 15 11 C 0.23 7.72 6.07 42.46 0.26 7.97 15 12 N -0.54 -17.72 10.40 -301.67 -3.14 -20.86 15 13 C 0.52 14.96 8.71 180.59 1.57 16.54 15 14 O -0.45 -10.33 13.64 -87.75 -1.20 -11.52 15 15 N -0.55 -15.24 10.49 -426.27 -4.47 -19.71 15 16 C 0.41 10.53 7.83 84.86 0.66 11.20 15 17 O -0.46 -8.89 13.12 -88.28 -1.16 -10.05 15 18 C -0.18 -5.23 6.37 22.58 0.14 -5.09 15 19 Cl -0.01 -0.25 27.09 -2.72 -0.07 -0.32 15 20 H 0.27 15.32 8.31 -92.71 -0.77 14.55 15 21 H 0.01 0.67 7.20 -2.39 -0.02 0.65 15 22 H 0.02 1.03 7.57 -2.39 -0.02 1.01 15 23 H 0.10 3.48 7.00 -2.39 -0.02 3.46 15 24 H 0.09 3.30 8.14 -2.39 -0.02 3.28 15 25 H 0.44 4.69 9.06 -74.06 -0.67 4.02 15 26 H 0.43 4.02 9.06 -74.06 -0.67 3.35 15 Total: -1.00 -69.88 254.49 -4.37 -74.25 By element: Atomic # 1 Polarization: -0.85 SS G_CDS: -0.14 Total: -1.00 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: 3.62 Total: 1.30 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -7.31 Total: -98.30 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -2.35 Total: -21.57 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.88 Total: 45.64 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -0.07 Total: -0.32 kcal Total: -69.88 -4.37 -74.25 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261009646.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.548 kcal (2) G-P(sol) polarization free energy of solvation -69.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds