Wall clock time and date at job start Mon Mar 30 2020 04:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86802 * 119.99721 * 2 1 4 4 H 1.48494 * 109.47230 * 274.98805 * 3 2 1 5 5 H 1.48500 * 109.46961 * 34.99003 * 3 2 1 6 6 H 1.48504 * 109.46397 * 154.98773 * 3 2 1 7 7 C 1.40115 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00274 * 186.16733 * 7 2 1 9 9 C 1.41442 * 120.00222 * 6.17478 * 7 2 1 10 10 N 1.34071 * 120.63411 * 353.53410 * 9 7 2 11 11 C 1.31875 * 120.53831 * 180.02562 * 10 9 7 12 12 O 1.35461 * 119.03445 * 179.72060 * 11 10 9 13 13 N 1.32598 * 121.93465 * 359.97438 * 11 10 9 14 14 C 1.32340 * 121.25460 * 0.02562 * 13 11 10 15 15 C 1.38509 * 119.30739 * 359.97438 * 14 13 11 16 16 Br 1.89096 * 120.88238 * 179.97438 * 15 14 13 17 17 H 0.96997 * 120.00186 * 359.97438 * 1 2 3 18 18 H 0.96697 * 113.99697 * 89.99463 * 12 11 10 19 19 H 1.08001 * 120.34897 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3827 2.1074 -1.3947 5 1 1.4948 2.6199 0.8029 6 1 3.5870 1.4120 0.5920 7 6 2.0073 -1.2134 -0.0005 8 1 3.0826 -1.2162 0.0999 9 6 1.3063 -2.4348 -0.1328 10 7 -0.0342 -2.4569 -0.1290 11 6 -0.6859 -3.5968 -0.2520 12 8 -2.0404 -3.5845 -0.2384 13 7 -0.0542 -4.7552 -0.3835 14 6 1.2676 -4.8189 -0.3968 15 6 2.0039 -3.6524 -0.2713 16 35 3.8944 -3.6918 -0.2839 17 1 -0.4850 0.8400 0.0004 18 1 -2.4415 -3.4816 -1.1122 19 1 1.7670 -5.7704 -0.5044 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261054071.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:29 Heat of formation + Delta-G solvation = 1.913391 kcal Electronic energy + Delta-G solvation = -10416.111609 eV Core-core repulsion = 8173.466370 eV Total energy + Delta-G solvation = -2242.645238 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 243.959 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.26766 -36.23210 -34.20470 -31.66268 -31.17279 -28.25195 -26.47920 -22.57331 -21.83294 -18.48041 -17.36882 -16.13203 -15.18633 -14.74652 -13.93604 -13.19459 -12.87661 -12.47169 -11.54141 -11.42577 -11.30014 -10.77582 -10.44128 -10.12517 -9.96627 -9.54448 -9.21199 -8.89412 -7.82273 -7.62488 -6.72478 -5.06766 2.17823 2.62372 2.91042 2.94761 2.99830 3.04951 3.72905 4.31622 4.62233 5.42106 5.66231 6.13842 6.45097 6.68574 6.82171 7.28625 7.81978 7.97321 8.35616 8.49989 8.78470 9.75899 9.93207 Molecular weight = 243.96amu Principal moments of inertia in cm(-1) A = 0.020176 B = 0.015913 C = 0.008937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.469975 B = 1759.093293 C = 3132.427643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.692 5.692 2 C 0.063 3.937 3 Si 0.916 3.084 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.255 1.255 7 C -0.392 4.392 8 H 0.106 0.894 9 C 0.290 3.710 10 N -0.512 5.512 11 C 0.486 3.514 12 O -0.475 6.475 13 N -0.630 5.630 14 C 0.197 3.803 15 C -0.301 4.301 16 Br -0.082 7.082 17 H 0.282 0.718 18 H 0.393 0.607 19 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.014 -1.158 -1.948 5.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.311 5.311 2 C -0.166 4.166 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.178 1.178 7 C -0.424 4.424 8 H 0.124 0.876 9 C 0.162 3.838 10 N -0.243 5.243 11 C 0.179 3.821 12 O -0.276 6.276 13 N -0.364 5.364 14 C 0.034 3.966 15 C -0.390 4.390 16 Br 0.000 7.000 17 H 0.093 0.907 18 H 0.248 0.752 19 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.468 -1.048 -1.322 4.776 hybrid contribution 0.565 0.703 -0.496 1.030 sum 5.033 -0.345 -1.818 5.363 Atomic orbital electron populations 1.70086 1.07581 1.29060 1.24391 1.26280 0.95038 1.01917 0.93375 0.86139 0.80750 0.79679 0.79559 1.18956 1.19672 1.17807 1.20076 0.95891 0.88789 1.37640 0.87614 1.18309 0.86457 0.91080 0.87905 1.69045 1.08153 1.25759 1.21317 1.20523 0.84923 0.85195 0.91485 1.84601 1.14153 1.95002 1.33868 1.67723 1.09571 1.30149 1.28962 1.22120 0.88319 0.95818 0.90308 1.23080 0.88861 0.98946 1.28076 1.96279 1.06306 1.98975 1.98405 0.90701 0.75182 0.84142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.39 11.55 55.55 0.64 -16.75 13 2 C 0.06 1.51 5.49 -17.34 -0.10 1.41 13 3 Si 0.92 17.38 29.56 -169.99 -5.03 12.36 13 4 H -0.26 -4.95 7.11 56.52 0.40 -4.54 13 5 H -0.27 -5.04 7.11 56.52 0.40 -4.64 13 6 H -0.25 -4.75 7.11 56.52 0.40 -4.34 13 7 C -0.39 -9.88 8.82 -37.66 -0.33 -10.21 13 8 H 0.11 2.51 6.55 -52.49 -0.34 2.17 13 9 C 0.29 7.65 6.57 -84.62 -0.56 7.10 13 10 N -0.51 -13.99 8.10 -12.66 -0.10 -14.09 13 11 C 0.49 12.38 8.70 -91.39 -0.80 11.58 13 12 O -0.47 -10.59 13.64 -18.07 -0.25 -10.84 13 13 N -0.63 -15.39 10.44 -14.78 -0.15 -15.55 13 14 C 0.20 4.47 11.08 -17.23 -0.19 4.28 13 15 C -0.30 -7.13 6.33 -38.43 -0.24 -7.38 13 16 Br -0.08 -1.62 32.10 -68.01 -2.18 -3.80 13 17 H 0.28 6.33 8.29 -40.82 -0.34 5.99 13 18 H 0.39 6.57 9.06 45.56 0.41 6.98 13 19 H 0.14 2.70 8.06 -52.49 -0.42 2.28 13 LS Contribution 205.67 15.07 3.10 3.10 Total: -1.00 -29.22 205.67 -5.67 -34.89 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: 0.51 Total: 3.89 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: -2.21 Total: 6.79 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 0.38 Total: -46.39 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -0.25 Total: -10.84 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.36 kcal Atomic # 35 Polarization: -1.62 SS G_CDS: -2.18 Total: -3.80 kcal Total LS contribution 3.10 Total: 3.10 kcal Total: -29.22 -5.67 -34.89 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261054071.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.806 kcal (2) G-P(sol) polarization free energy of solvation -29.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds