Wall clock time and date at job start Mon Mar 30 2020 04:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86802 * 119.99721 * 2 1 4 4 H 1.48494 * 109.47230 * 274.98805 * 3 2 1 5 5 H 1.48500 * 109.46961 * 34.99003 * 3 2 1 6 6 H 1.48504 * 109.46397 * 154.98773 * 3 2 1 7 7 C 1.40115 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00274 * 186.16733 * 7 2 1 9 9 C 1.41442 * 120.00222 * 6.17478 * 7 2 1 10 10 N 1.34071 * 120.63411 * 353.53410 * 9 7 2 11 11 C 1.31875 * 120.53831 * 180.02562 * 10 9 7 12 12 O 1.35461 * 119.03445 * 179.72060 * 11 10 9 13 13 N 1.32598 * 121.93465 * 359.97438 * 11 10 9 14 14 C 1.32340 * 121.25460 * 0.02562 * 13 11 10 15 15 C 1.38509 * 119.30739 * 359.97438 * 14 13 11 16 16 Br 1.89096 * 120.88238 * 179.97438 * 15 14 13 17 17 H 0.96997 * 120.00186 * 359.97438 * 1 2 3 18 18 H 0.96697 * 113.99697 * 89.99463 * 12 11 10 19 19 H 1.08001 * 120.34897 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3827 2.1074 -1.3947 5 1 1.4948 2.6199 0.8029 6 1 3.5870 1.4120 0.5920 7 6 2.0073 -1.2134 -0.0005 8 1 3.0826 -1.2162 0.0999 9 6 1.3063 -2.4348 -0.1328 10 7 -0.0342 -2.4569 -0.1290 11 6 -0.6859 -3.5968 -0.2520 12 8 -2.0404 -3.5845 -0.2384 13 7 -0.0542 -4.7552 -0.3835 14 6 1.2676 -4.8189 -0.3968 15 6 2.0039 -3.6524 -0.2713 16 35 3.8944 -3.6918 -0.2839 17 1 -0.4850 0.8400 0.0004 18 1 -2.4415 -3.4816 -1.1122 19 1 1.7670 -5.7704 -0.5044 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261054071.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:29 Heat of formation + Delta-G solvation = -21.503252 kcal Electronic energy + Delta-G solvation = -10417.127030 eV Core-core repulsion = 8173.466370 eV Total energy + Delta-G solvation = -2243.660660 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 243.959 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.11474 -38.01484 -36.01945 -33.53203 -32.95399 -30.05214 -28.32175 -24.41821 -23.68841 -20.28962 -19.22562 -17.93608 -16.99184 -16.46509 -15.69632 -14.96872 -14.54956 -14.28101 -13.28131 -13.06545 -12.98593 -12.55061 -11.96616 -11.84623 -11.70498 -11.37747 -10.89908 -10.74588 -9.61827 -9.48116 -8.52254 -6.96025 0.34287 0.82810 1.14579 1.40385 1.52576 1.56956 2.15764 2.56181 2.82309 3.53969 3.92089 4.32590 4.69133 4.86640 5.04202 5.55140 5.94835 6.17358 6.53109 6.68406 6.99821 7.88329 8.18290 Molecular weight = 243.96amu Principal moments of inertia in cm(-1) A = 0.020176 B = 0.015913 C = 0.008937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.469975 B = 1759.093293 C = 3132.427643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.729 5.729 2 C 0.021 3.979 3 Si 0.992 3.008 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.247 1.247 7 C -0.412 4.412 8 H 0.115 0.885 9 C 0.257 3.743 10 N -0.546 5.546 11 C 0.475 3.525 12 O -0.479 6.479 13 N -0.638 5.638 14 C 0.194 3.806 15 C -0.316 4.316 16 Br -0.045 7.045 17 H 0.290 0.710 18 H 0.414 0.586 19 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.195 -0.661 -2.085 6.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.349 5.349 2 C -0.205 4.205 3 Si 0.810 3.190 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.170 1.170 7 C -0.444 4.444 8 H 0.133 0.867 9 C 0.131 3.869 10 N -0.278 5.278 11 C 0.168 3.832 12 O -0.284 6.284 13 N -0.373 5.373 14 C 0.033 3.967 15 C -0.405 4.405 16 Br 0.037 6.963 17 H 0.101 0.899 18 H 0.273 0.727 19 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 5.644 -0.582 -1.475 5.863 hybrid contribution 0.208 0.490 -0.464 0.706 sum 5.852 -0.092 -1.939 6.165 Atomic orbital electron populations 1.70156 1.09329 1.30603 1.24856 1.27252 0.95755 1.05236 0.92224 0.85026 0.79404 0.74701 0.79850 1.18249 1.18884 1.17018 1.20457 0.96480 0.89424 1.38002 0.86728 1.18792 0.86765 0.92648 0.88713 1.69007 1.09101 1.26821 1.22838 1.20774 0.85800 0.85324 0.91327 1.84537 1.13015 1.94962 1.35869 1.67813 1.10516 1.29587 1.29384 1.22683 0.87904 0.97010 0.89127 1.23278 0.91197 0.98424 1.27588 1.96268 1.02777 1.98902 1.98333 0.89877 0.72698 0.80706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -36.80 11.55 21.85 0.25 -36.55 13 2 C 0.02 1.00 5.49 85.32 0.47 1.47 13 3 Si 0.99 34.58 29.56 68.60 2.03 36.61 13 4 H -0.26 -8.67 7.11 99.48 0.71 -7.97 13 5 H -0.26 -8.83 7.11 99.48 0.71 -8.12 13 6 H -0.25 -8.24 7.11 99.48 0.71 -7.53 13 7 C -0.41 -20.60 8.82 23.52 0.21 -20.39 13 8 H 0.11 5.32 6.55 -2.91 -0.02 5.30 13 9 C 0.26 13.63 6.57 40.27 0.26 13.90 13 10 N -0.55 -30.15 8.10 -307.14 -2.49 -32.63 13 11 C 0.48 24.28 8.70 180.62 1.57 25.85 13 12 O -0.48 -21.36 13.64 -87.59 -1.19 -22.55 13 13 N -0.64 -30.83 10.44 -313.49 -3.27 -34.10 13 14 C 0.19 8.59 11.08 84.68 0.94 9.53 13 15 C -0.32 -14.75 6.33 23.01 0.15 -14.60 13 16 Br -0.05 -1.70 32.10 -20.37 -0.65 -2.36 13 17 H 0.29 13.03 8.29 -92.71 -0.77 12.26 13 18 H 0.41 13.75 9.06 -74.06 -0.67 13.07 13 19 H 0.18 6.32 8.06 -2.91 -0.02 6.29 13 Total: -1.00 -61.41 205.67 -1.09 -62.50 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.64 Total: 13.32 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: 3.60 Total: 15.76 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -5.51 Total: -103.28 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -1.19 Total: -22.55 kcal Atomic # 14 Polarization: 34.58 SS G_CDS: 2.03 Total: 36.61 kcal Atomic # 35 Polarization: -1.70 SS G_CDS: -0.65 Total: -2.36 kcal Total: -61.41 -1.09 -62.50 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261054071.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.998 kcal (2) G-P(sol) polarization free energy of solvation -61.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds