Wall clock time and date at job start Mon Mar 30 2020 04:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86792 * 119.99886 * 2 1 4 4 H 1.48500 * 109.47408 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47338 * 300.00036 * 3 2 1 6 6 H 1.48499 * 109.47319 * 59.99678 * 3 2 1 7 7 C 1.40036 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00063 * 180.02562 * 7 2 1 9 9 C 1.39914 * 120.00378 * 0.02562 * 7 2 1 10 10 C 1.39762 * 126.34659 * 180.18033 * 9 7 2 11 11 C 1.39243 * 107.08471 * 180.22257 * 10 9 7 12 12 C 1.50701 * 125.95643 * 179.74432 * 11 10 9 13 13 N 1.46903 * 109.46877 * 105.02011 * 12 11 10 14 14 C 1.36154 * 108.09157 * 359.77851 * 11 10 9 15 15 Br 1.89092 * 125.49262 * 179.97438 * 14 11 10 16 16 N 1.36226 * 109.01633 * 0.02562 * 14 11 10 17 17 H 0.97001 * 125.74919 * 179.97438 * 16 14 11 18 18 H 0.96998 * 120.00044 * 0.02562 * 1 2 3 19 19 H 1.08003 * 126.46067 * 0.02562 * 10 9 7 20 20 H 1.09002 * 109.47177 * 225.01964 * 12 11 10 21 21 H 1.09001 * 109.46946 * 345.01875 * 12 11 10 22 22 H 1.00893 * 111.00000 * 56.04758 * 13 12 11 23 23 H 1.00896 * 110.99367 * 180.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 0.0006 5 1 1.8841 2.3964 -1.2125 6 1 1.8840 2.3964 1.2124 7 6 2.0091 -1.2127 0.0005 8 1 3.0891 -1.2128 0.0010 9 6 1.3096 -2.4245 0.0005 10 6 1.8704 -3.7046 0.0046 11 6 0.8154 -4.6134 -0.0022 12 6 0.9411 -6.1152 -0.0065 13 7 0.6193 -6.6372 1.3284 14 6 -0.3496 -3.9088 -0.0052 15 35 -2.0858 -4.6580 -0.0151 16 7 -0.0629 -2.5771 -0.0010 17 1 -0.7132 -1.8573 -0.0022 18 1 -0.4850 0.8400 -0.0004 19 1 2.9235 -3.9440 0.0087 20 1 0.2503 -6.5356 -0.7373 21 1 1.9617 -6.3935 -0.2692 22 1 -0.2985 -6.3381 1.6220 23 1 0.6968 -7.6429 1.3516 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261055982.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:43 Heat of formation + Delta-G solvation = 20.535996 kcal Electronic energy + Delta-G solvation = -10531.956354 eV Core-core repulsion = 8425.951747 eV Total energy + Delta-G solvation = -2106.004607 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 243.991 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.17751 -34.38434 -33.20586 -30.43191 -29.14494 -28.22199 -24.62613 -23.10510 -19.44353 -18.22383 -17.47402 -15.41781 -15.13867 -14.48786 -13.93563 -12.98087 -12.55254 -12.55211 -12.02695 -11.43409 -11.36109 -10.96188 -10.78976 -10.42876 -10.06345 -10.03093 -9.49639 -9.33282 -8.13075 -7.28379 -6.98860 -6.97045 -4.37572 2.66167 2.87954 3.03413 3.09918 3.56953 3.86858 4.02794 5.24709 5.28306 5.49054 5.98084 6.14316 6.42004 6.99836 7.18643 7.36888 7.63905 7.69260 7.85490 8.01663 8.04088 8.61489 8.66125 8.98468 9.49222 10.10735 Molecular weight = 243.99amu Principal moments of inertia in cm(-1) A = 0.040095 B = 0.008801 C = 0.007370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.166240 B = 3180.754759 C = 3798.512605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.065 3.935 3 Si 0.932 3.068 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.442 4.442 8 H 0.095 0.905 9 C 0.249 3.751 10 C -0.318 4.318 11 C -0.092 4.092 12 C 0.136 3.864 13 N -0.844 5.844 14 C -0.090 4.090 15 Br -0.073 7.073 16 N -0.538 5.538 17 H 0.423 0.577 18 H 0.287 0.713 19 H 0.113 0.887 20 H 0.020 0.980 21 H 0.068 0.932 22 H 0.340 0.660 23 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.446 -5.498 -0.396 6.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.148 4.148 3 Si 0.757 3.243 4 H -0.183 1.183 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.477 4.477 8 H 0.113 0.887 9 C 0.131 3.869 10 C -0.341 4.341 11 C -0.103 4.103 12 C 0.006 3.994 13 N -0.373 5.373 14 C -0.276 4.276 15 Br 0.010 6.990 16 N -0.148 5.148 17 H 0.271 0.729 18 H 0.098 0.902 19 H 0.131 0.869 20 H 0.038 0.962 21 H 0.086 0.914 22 H 0.152 0.848 23 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.800 -5.119 -0.162 6.377 hybrid contribution -0.509 0.770 -0.475 1.039 sum -4.309 -4.348 -0.637 6.155 Atomic orbital electron populations 1.68824 1.07769 1.29834 1.41823 1.25969 0.94839 1.01955 0.92015 0.85853 0.80419 0.79695 0.78373 1.18339 1.19983 1.19964 1.18891 0.95062 0.88224 1.45553 0.88652 1.18099 0.80543 0.93718 0.94548 1.20544 0.96178 0.90797 1.26594 1.18548 0.91341 0.92784 1.07580 1.20026 0.99356 0.91618 0.88442 1.58767 1.36159 1.14100 1.28266 1.20967 0.87677 0.87075 1.31875 1.96318 1.21349 1.82571 1.98794 1.42755 1.08077 1.04388 1.59531 0.72936 0.90213 0.86932 0.96160 0.91371 0.84751 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.25 10.69 55.55 0.59 -20.65 14 2 C 0.06 1.59 5.50 -17.28 -0.09 1.49 14 3 Si 0.93 18.55 29.56 -169.99 -5.03 13.53 14 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 14 5 H -0.27 -5.40 7.11 56.52 0.40 -4.99 14 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 14 7 C -0.44 -11.56 9.33 -38.28 -0.36 -11.92 14 8 H 0.10 2.37 7.85 -52.49 -0.41 1.96 14 9 C 0.25 6.70 6.71 -83.85 -0.56 6.13 14 10 C -0.32 -8.08 10.82 -38.64 -0.42 -8.50 14 11 C -0.09 -2.15 5.61 -105.00 -0.59 -2.74 14 12 C 0.14 2.61 6.94 -4.97 -0.03 2.58 14 13 N -0.84 -14.69 9.61 -11.40 -0.11 -14.80 14 14 C -0.09 -2.14 7.63 -16.35 -0.12 -2.27 14 15 Br -0.07 -1.40 33.30 -68.01 -2.26 -3.67 14 16 N -0.54 -13.95 5.78 -8.77 -0.05 -14.00 14 17 H 0.42 11.02 6.28 -40.82 -0.26 10.76 14 18 H 0.29 6.53 8.30 -40.82 -0.34 6.19 14 19 H 0.11 2.70 8.06 -52.48 -0.42 2.28 14 20 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 14 21 H 0.07 1.25 8.13 -51.93 -0.42 0.82 14 22 H 0.34 6.00 8.52 -39.30 -0.33 5.66 14 23 H 0.33 4.55 9.08 -39.29 -0.36 4.19 14 LS Contribution 227.16 15.07 3.42 3.42 Total: -1.00 -26.88 227.16 -7.38 -34.25 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -1.76 Total: 17.13 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -2.18 Total: -15.22 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.43 Total: -49.45 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.53 kcal Atomic # 35 Polarization: -1.40 SS G_CDS: -2.26 Total: -3.67 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -26.88 -7.38 -34.25 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261055982.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.790 kcal (2) G-P(sol) polarization free energy of solvation -26.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds