Wall clock time and date at job start Mon Mar 30 2020 04:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86792 * 119.99886 * 2 1 4 4 H 1.48500 * 109.47408 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47338 * 300.00036 * 3 2 1 6 6 H 1.48499 * 109.47319 * 59.99678 * 3 2 1 7 7 C 1.40036 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00063 * 180.02562 * 7 2 1 9 9 C 1.39914 * 120.00378 * 0.02562 * 7 2 1 10 10 C 1.39762 * 126.34659 * 180.18033 * 9 7 2 11 11 C 1.39243 * 107.08471 * 180.22257 * 10 9 7 12 12 C 1.50701 * 125.95643 * 179.74432 * 11 10 9 13 13 N 1.46903 * 109.46877 * 105.02011 * 12 11 10 14 14 C 1.36154 * 108.09157 * 359.77851 * 11 10 9 15 15 Br 1.89092 * 125.49262 * 179.97438 * 14 11 10 16 16 N 1.36226 * 109.01633 * 0.02562 * 14 11 10 17 17 H 0.97001 * 125.74919 * 179.97438 * 16 14 11 18 18 H 0.96998 * 120.00044 * 0.02562 * 1 2 3 19 19 H 1.08003 * 126.46067 * 0.02562 * 10 9 7 20 20 H 1.09002 * 109.47177 * 225.01964 * 12 11 10 21 21 H 1.09001 * 109.46946 * 345.01875 * 12 11 10 22 22 H 1.00893 * 111.00000 * 56.04758 * 13 12 11 23 23 H 1.00896 * 110.99367 * 180.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 0.0006 5 1 1.8841 2.3964 -1.2125 6 1 1.8840 2.3964 1.2124 7 6 2.0091 -1.2127 0.0005 8 1 3.0891 -1.2128 0.0010 9 6 1.3096 -2.4245 0.0005 10 6 1.8704 -3.7046 0.0046 11 6 0.8154 -4.6134 -0.0022 12 6 0.9411 -6.1152 -0.0065 13 7 0.6193 -6.6372 1.3284 14 6 -0.3496 -3.9088 -0.0052 15 35 -2.0858 -4.6580 -0.0151 16 7 -0.0629 -2.5771 -0.0010 17 1 -0.7132 -1.8573 -0.0022 18 1 -0.4850 0.8400 -0.0004 19 1 2.9235 -3.9440 0.0087 20 1 0.2503 -6.5356 -0.7373 21 1 1.9617 -6.3935 -0.2692 22 1 -0.2985 -6.3381 1.6220 23 1 0.6968 -7.6429 1.3516 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261055982.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:43 Heat of formation + Delta-G solvation = 2.222159 kcal Electronic energy + Delta-G solvation = -10532.750501 eV Core-core repulsion = 8425.951747 eV Total energy + Delta-G solvation = -2106.798754 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 243.991 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.04560 -36.04930 -34.94721 -32.19473 -30.94044 -30.08142 -26.41351 -24.79430 -21.34440 -20.11942 -19.27396 -17.30494 -16.68575 -16.10779 -15.46785 -14.69261 -14.36482 -14.27219 -13.81714 -13.21452 -12.97847 -12.73605 -12.41024 -12.22651 -11.77254 -11.73204 -11.15786 -11.10865 -9.56901 -9.15448 -8.87906 -8.81178 -6.31677 0.86921 1.25111 1.41034 1.57206 1.77488 2.19486 2.20440 3.33530 3.37229 4.06340 4.44289 4.53062 4.82093 5.15779 5.32264 5.45345 5.76839 5.94370 6.12137 6.31131 6.68455 6.74204 6.82700 7.04863 7.53756 8.27784 Molecular weight = 243.99amu Principal moments of inertia in cm(-1) A = 0.040095 B = 0.008801 C = 0.007370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.166240 B = 3180.754759 C = 3798.512605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.026 3.974 3 Si 1.006 2.994 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.476 4.476 8 H 0.096 0.904 9 C 0.215 3.785 10 C -0.344 4.344 11 C -0.097 4.097 12 C 0.141 3.859 13 N -0.848 5.848 14 C -0.106 4.106 15 Br -0.030 7.030 16 N -0.549 5.549 17 H 0.418 0.582 18 H 0.296 0.704 19 H 0.115 0.885 20 H 0.034 0.966 21 H 0.076 0.924 22 H 0.339 0.661 23 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.667 -5.545 -0.350 6.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.184 4.184 3 Si 0.827 3.173 4 H -0.179 1.179 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.512 4.512 8 H 0.114 0.886 9 C 0.097 3.903 10 C -0.367 4.367 11 C -0.107 4.107 12 C 0.011 3.989 13 N -0.379 5.379 14 C -0.292 4.292 15 Br 0.053 6.947 16 N -0.159 5.159 17 H 0.265 0.735 18 H 0.107 0.893 19 H 0.134 0.866 20 H 0.052 0.948 21 H 0.094 0.906 22 H 0.152 0.848 23 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.031 -5.212 -0.113 6.589 hybrid contribution -0.538 0.704 -0.483 1.009 sum -4.569 -4.508 -0.596 6.446 Atomic orbital electron populations 1.68857 1.08980 1.31213 1.41324 1.26884 0.95670 1.05095 0.90791 0.84756 0.79041 0.74887 0.78637 1.17933 1.19155 1.19259 1.19173 0.95405 0.89215 1.47357 0.88601 1.18545 0.81387 0.94707 0.95611 1.20792 0.96964 0.91216 1.27771 1.19012 0.90606 0.94892 1.06236 1.19979 1.00331 0.88941 0.89669 1.58654 1.36157 1.15950 1.27156 1.21548 0.90241 0.86519 1.30864 1.96317 1.18015 1.81684 1.98727 1.42825 1.07722 1.05181 1.60150 0.73499 0.89304 0.86650 0.94841 0.90553 0.84837 0.83709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -43.62 10.69 21.85 0.23 -43.39 14 2 C 0.03 1.25 5.50 85.27 0.47 1.72 14 3 Si 1.01 37.53 29.56 68.60 2.03 39.56 14 4 H -0.26 -9.29 7.11 99.48 0.71 -8.59 14 5 H -0.27 -9.57 7.11 99.48 0.71 -8.86 14 6 H -0.27 -9.65 7.11 99.48 0.71 -8.94 14 7 C -0.48 -25.41 9.33 23.11 0.22 -25.20 14 8 H 0.10 4.89 7.85 -2.91 -0.02 4.87 14 9 C 0.22 11.84 6.71 38.93 0.26 12.10 14 10 C -0.34 -17.77 10.82 22.88 0.25 -17.52 14 11 C -0.10 -4.50 5.61 -20.11 -0.11 -4.61 14 12 C 0.14 5.19 6.94 85.56 0.59 5.78 14 13 N -0.85 -27.76 9.61 -190.00 -1.83 -29.59 14 14 C -0.11 -5.01 7.63 83.53 0.64 -4.37 14 15 Br -0.03 -1.11 33.30 -20.37 -0.68 -1.79 14 16 N -0.55 -28.83 5.78 -181.65 -1.05 -29.88 14 17 H 0.42 22.09 6.28 -92.71 -0.58 21.51 14 18 H 0.30 13.34 8.30 -92.71 -0.77 12.57 14 19 H 0.12 5.66 8.06 -2.91 -0.02 5.64 14 20 H 0.03 1.14 8.14 -2.39 -0.02 1.12 14 21 H 0.08 2.66 8.13 -2.39 -0.02 2.64 14 22 H 0.34 11.28 8.52 -89.70 -0.76 10.51 14 23 H 0.35 8.79 9.08 -89.70 -0.81 7.97 14 Total: -1.00 -56.86 227.16 0.13 -56.74 By element: Atomic # 1 Polarization: 41.34 SS G_CDS: -0.89 Total: 40.45 kcal Atomic # 6 Polarization: -34.41 SS G_CDS: 2.31 Total: -32.10 kcal Atomic # 7 Polarization: -100.22 SS G_CDS: -2.64 Total: -102.86 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.03 Total: 39.56 kcal Atomic # 35 Polarization: -1.11 SS G_CDS: -0.68 Total: -1.79 kcal Total: -56.86 0.13 -56.74 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261055982.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.961 kcal (2) G-P(sol) polarization free energy of solvation -56.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds