Wall clock time and date at job start Mon Mar 30 2020 05:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86807 * 119.99872 * 2 1 4 4 H 1.48504 * 109.46934 * 270.00162 * 3 2 1 5 5 H 1.48499 * 109.46984 * 29.99972 * 3 2 1 6 6 H 1.48494 * 109.46860 * 150.00168 * 3 2 1 7 7 C 1.39944 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99974 * 197.84745 * 7 2 1 9 9 C 1.41395 * 119.99961 * 17.84376 * 7 2 1 10 10 C 1.40716 * 120.24214 * 204.38632 * 9 7 2 11 11 C 1.37621 * 119.74679 * 180.02562 * 10 9 7 12 12 C 1.38640 * 120.24335 * 0.02562 * 11 10 9 13 13 S 1.76202 * 119.74668 * 179.97438 * 12 11 10 14 14 O 1.42096 * 104.27598 * 206.07350 * 13 12 11 15 15 O 1.42102 * 104.27844 * 333.93493 * 13 12 11 16 16 C 1.81404 * 104.44434 * 90.00195 * 13 12 11 17 17 F 1.39901 * 109.47044 * 65.00321 * 16 13 12 18 18 C 1.38630 * 120.50269 * 0.25239 * 12 11 10 19 19 C 1.37623 * 120.25034 * 359.44728 * 18 12 11 20 20 H 0.96998 * 119.99826 * 359.97438 * 1 2 3 21 21 H 1.08000 * 120.12876 * 0.02562 * 10 9 7 22 22 H 1.07994 * 119.87820 * 179.97438 * 11 10 9 23 23 H 1.09003 * 109.46452 * 184.99730 * 16 13 12 24 24 H 1.08998 * 109.47526 * 304.99633 * 16 13 12 25 25 H 1.07999 * 119.87685 * 179.70087 * 18 12 11 26 26 H 1.08000 * 120.12740 * 180.27536 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2120 -0.0005 8 1 3.0489 -1.2346 0.2861 9 6 1.3520 -2.4068 -0.3763 10 6 1.8258 -3.6499 0.0825 11 6 1.1798 -4.8066 -0.2900 12 6 0.0666 -4.7502 -1.1144 13 16 -0.7500 -6.2394 -1.5837 14 8 -1.3708 -5.9232 -2.8222 15 8 0.2618 -7.2340 -1.5042 16 6 -1.9985 -6.4968 -0.2932 17 9 -2.9405 -5.4636 -0.3428 18 6 -0.4054 -3.5316 -1.5770 19 6 0.2211 -2.3618 -1.2123 20 1 -0.4850 0.8400 0.0004 21 1 2.6931 -3.6961 0.7245 22 1 1.5419 -5.7617 0.0605 23 1 -2.4979 -7.4519 -0.4563 24 1 -1.5155 -6.5016 0.6840 25 1 -1.2706 -3.4998 -2.2227 26 1 -0.1511 -1.4132 -1.5703 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261109963.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:00 Heat of formation + Delta-G solvation = -102.826709 kcal Electronic energy + Delta-G solvation = -15257.403302 eV Core-core repulsion = 12342.600717 eV Total energy + Delta-G solvation = -2914.802585 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 244.036 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.64136 -37.61025 -36.55659 -35.42628 -34.07806 -30.30881 -29.49477 -27.92782 -25.85805 -21.55215 -21.17521 -18.55827 -17.63936 -17.06767 -16.74984 -16.21630 -15.69293 -15.37929 -14.67496 -14.13475 -13.46993 -13.41437 -13.22816 -12.45336 -12.21975 -11.82907 -11.65103 -11.51900 -11.50194 -11.32604 -11.22850 -10.94094 -10.43726 -10.25063 -9.75856 -9.53396 -9.48420 -7.98711 -7.72570 -7.17342 -4.83094 0.49140 2.23444 2.86779 2.89365 2.91789 2.93342 3.53527 3.64468 4.05530 4.33321 4.46586 4.71275 4.95641 5.35444 5.37346 6.02886 6.13478 6.66094 6.69088 6.90022 7.01070 7.31456 7.38785 7.61234 7.74317 7.93364 8.29309 8.47924 8.61932 9.73767 Molecular weight = 244.04amu Principal moments of inertia in cm(-1) A = 0.044131 B = 0.006530 C = 0.006156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.315543 B = 4286.593063 C = 4547.260196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.071 3.929 3 Si 0.919 3.081 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.430 4.430 8 H 0.089 0.911 9 C 0.137 3.863 10 C -0.236 4.236 11 C -0.004 4.004 12 C -0.766 4.766 13 S 2.483 3.517 14 O -0.940 6.940 15 O -0.945 6.945 16 C -0.436 4.436 17 F -0.173 7.173 18 C -0.011 4.011 19 C -0.183 4.183 20 H 0.290 0.710 21 H 0.101 0.899 22 H 0.107 0.893 23 H 0.120 0.880 24 H 0.131 0.869 25 H 0.107 0.893 26 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.765 -4.250 1.405 4.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.152 4.152 3 Si 0.742 3.258 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.458 4.458 8 H 0.107 0.893 9 C 0.134 3.866 10 C -0.257 4.257 11 C -0.024 4.024 12 C -0.863 4.863 13 S 2.665 3.335 14 O -0.937 6.937 15 O -0.943 6.943 16 C -0.575 4.575 17 F -0.155 7.155 18 C -0.031 4.031 19 C -0.203 4.203 20 H 0.102 0.898 21 H 0.120 0.880 22 H 0.125 0.875 23 H 0.138 0.862 24 H 0.149 0.851 25 H 0.125 0.875 26 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.942 -4.675 0.738 5.116 hybrid contribution 0.043 1.279 0.910 1.570 sum -1.900 -3.396 1.648 4.225 Atomic orbital electron populations 1.69821 1.07948 1.30521 1.30115 1.26165 0.94914 1.02225 0.91869 0.86117 0.80471 0.79368 0.79848 1.18726 1.19837 1.18161 1.19992 0.98493 0.91157 1.36117 0.89296 1.17889 0.90096 0.92200 0.86443 1.21058 1.04469 0.92596 1.07586 1.20204 0.92342 0.97417 0.92389 1.28568 1.15583 1.14626 1.27500 1.05557 0.75426 0.76331 0.76166 1.93502 1.77985 1.84558 1.37703 1.93516 1.53581 1.60364 1.86804 1.31645 1.07117 0.95556 1.23177 1.92843 1.65868 1.58610 1.98143 1.20298 0.96688 0.91485 0.94661 1.21343 1.00118 0.96877 1.01996 0.89850 0.88045 0.87483 0.86169 0.85070 0.87480 0.85860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.99 10.95 55.55 0.61 -17.38 15 2 C 0.07 1.61 5.14 -17.34 -0.09 1.52 15 3 Si 0.92 16.82 29.60 -169.99 -5.03 11.79 15 4 H -0.26 -4.80 7.11 56.52 0.40 -4.39 15 5 H -0.27 -4.89 7.11 56.52 0.40 -4.49 15 6 H -0.26 -4.66 7.11 56.52 0.40 -4.26 15 7 C -0.43 -10.42 9.05 -37.74 -0.34 -10.76 15 8 H 0.09 2.03 7.91 -52.49 -0.42 1.61 15 9 C 0.14 3.45 5.57 -106.83 -0.60 2.86 15 10 C -0.24 -5.47 9.80 -38.87 -0.38 -5.85 15 11 C 0.00 -0.08 9.44 -39.66 -0.37 -0.45 15 12 C -0.77 -16.46 5.68 -39.29 -0.22 -16.68 15 13 S 2.48 44.07 5.59 -107.50 -0.60 43.47 15 14 O -0.94 -19.28 17.09 -57.54 -0.98 -20.27 15 15 O -0.95 -18.04 17.10 -57.54 -0.98 -19.03 15 16 C -0.44 -6.10 8.35 101.05 0.84 -5.25 15 17 F -0.17 -2.98 17.40 2.25 0.04 -2.94 15 18 C -0.01 -0.26 9.44 -39.66 -0.37 -0.63 15 19 C -0.18 -4.57 8.70 -38.87 -0.34 -4.91 15 20 H 0.29 6.13 8.30 -40.82 -0.34 5.79 15 21 H 0.10 2.14 8.06 -52.49 -0.42 1.72 15 22 H 0.11 2.00 7.55 -52.49 -0.40 1.60 15 23 H 0.12 1.23 8.14 -51.92 -0.42 0.81 15 24 H 0.13 1.55 8.14 -51.92 -0.42 1.13 15 25 H 0.11 2.33 7.54 -52.49 -0.40 1.94 15 26 H 0.12 3.12 6.16 -52.49 -0.32 2.79 15 LS Contribution 252.03 15.07 3.80 3.80 Total: -1.00 -29.52 252.03 -6.96 -36.48 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -1.93 Total: 4.25 kcal Atomic # 6 Polarization: -38.29 SS G_CDS: -1.87 Total: -40.16 kcal Atomic # 7 Polarization: -17.99 SS G_CDS: 0.61 Total: -17.38 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -1.97 Total: -39.29 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.04 Total: -2.94 kcal Atomic # 14 Polarization: 16.82 SS G_CDS: -5.03 Total: 11.79 kcal Atomic # 16 Polarization: 44.07 SS G_CDS: -0.60 Total: 43.47 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.52 -6.96 -36.48 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261109963.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.351 kcal (2) G-P(sol) polarization free energy of solvation -29.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds