Wall clock time and date at job start Mon Mar 30 2020 05:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86807 * 119.99872 * 2 1 4 4 H 1.48504 * 109.46934 * 270.00162 * 3 2 1 5 5 H 1.48499 * 109.46984 * 29.99972 * 3 2 1 6 6 H 1.48494 * 109.46860 * 150.00168 * 3 2 1 7 7 C 1.39944 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99974 * 197.84745 * 7 2 1 9 9 C 1.41395 * 119.99961 * 17.84376 * 7 2 1 10 10 C 1.40716 * 120.24214 * 204.38632 * 9 7 2 11 11 C 1.37621 * 119.74679 * 180.02562 * 10 9 7 12 12 C 1.38640 * 120.24335 * 0.02562 * 11 10 9 13 13 S 1.76202 * 119.74668 * 179.97438 * 12 11 10 14 14 O 1.42096 * 104.27598 * 206.07350 * 13 12 11 15 15 O 1.42102 * 104.27844 * 333.93493 * 13 12 11 16 16 C 1.81404 * 104.44434 * 90.00195 * 13 12 11 17 17 F 1.39901 * 109.47044 * 65.00321 * 16 13 12 18 18 C 1.38630 * 120.50269 * 0.25239 * 12 11 10 19 19 C 1.37623 * 120.25034 * 359.44728 * 18 12 11 20 20 H 0.96998 * 119.99826 * 359.97438 * 1 2 3 21 21 H 1.08000 * 120.12876 * 0.02562 * 10 9 7 22 22 H 1.07994 * 119.87820 * 179.97438 * 11 10 9 23 23 H 1.09003 * 109.46452 * 184.99730 * 16 13 12 24 24 H 1.08998 * 109.47526 * 304.99633 * 16 13 12 25 25 H 1.07999 * 119.87685 * 179.70087 * 18 12 11 26 26 H 1.08000 * 120.12740 * 180.27536 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2120 -0.0005 8 1 3.0489 -1.2346 0.2861 9 6 1.3520 -2.4068 -0.3763 10 6 1.8258 -3.6499 0.0825 11 6 1.1798 -4.8066 -0.2900 12 6 0.0666 -4.7502 -1.1144 13 16 -0.7500 -6.2394 -1.5837 14 8 -1.3708 -5.9232 -2.8222 15 8 0.2618 -7.2340 -1.5042 16 6 -1.9985 -6.4968 -0.2932 17 9 -2.9405 -5.4636 -0.3428 18 6 -0.4054 -3.5316 -1.5770 19 6 0.2211 -2.3618 -1.2123 20 1 -0.4850 0.8400 0.0004 21 1 2.6931 -3.6961 0.7245 22 1 1.5419 -5.7617 0.0605 23 1 -2.4979 -7.4519 -0.4563 24 1 -1.5155 -6.5016 0.6840 25 1 -1.2706 -3.4998 -2.2227 26 1 -0.1511 -1.4132 -1.5703 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261109963.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:00 Heat of formation + Delta-G solvation = -122.823274 kcal Electronic energy + Delta-G solvation = -15258.270418 eV Core-core repulsion = 12342.600717 eV Total energy + Delta-G solvation = -2915.669701 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 244.036 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.94003 -39.37055 -38.07395 -36.94910 -35.79905 -32.07141 -31.27610 -29.14353 -27.60918 -23.28531 -22.95497 -20.03349 -19.40704 -18.58907 -18.11798 -17.53530 -17.23444 -16.77532 -16.15013 -15.79447 -15.19692 -14.95958 -14.74909 -14.08549 -13.96040 -13.58381 -13.17725 -13.04374 -12.90719 -12.87654 -12.65522 -12.57760 -11.97188 -11.66520 -11.49933 -11.24021 -11.11360 -9.77140 -9.53227 -8.86991 -6.64595 -0.91486 0.50666 1.07732 1.35828 1.44313 1.51053 2.04654 2.11470 2.44144 2.90511 3.10973 3.55334 3.62106 3.90394 4.08487 4.35089 4.37335 4.89174 4.95239 5.12231 5.24862 5.53851 5.60847 5.77704 5.94570 6.16220 6.50359 6.68757 6.82047 8.08059 Molecular weight = 244.04amu Principal moments of inertia in cm(-1) A = 0.044131 B = 0.006530 C = 0.006156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.315543 B = 4286.593063 C = 4547.260196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.034 3.966 3 Si 0.992 3.008 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.252 1.252 7 C -0.466 4.466 8 H 0.093 0.907 9 C 0.108 3.892 10 C -0.258 4.258 11 C -0.005 4.005 12 C -0.783 4.783 13 S 2.512 3.488 14 O -0.972 6.972 15 O -0.957 6.957 16 C -0.414 4.414 17 F -0.189 7.189 18 C -0.021 4.021 19 C -0.212 4.212 20 H 0.298 0.702 21 H 0.114 0.886 22 H 0.139 0.861 23 H 0.175 0.825 24 H 0.165 0.835 25 H 0.113 0.887 26 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.176 -5.605 2.234 6.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.186 4.186 3 Si 0.811 3.189 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.176 1.176 7 C -0.493 4.493 8 H 0.111 0.889 9 C 0.104 3.896 10 C -0.278 4.278 11 C -0.024 4.024 12 C -0.875 4.875 13 S 2.694 3.306 14 O -0.970 6.970 15 O -0.954 6.954 16 C -0.559 4.559 17 F -0.170 7.170 18 C -0.041 4.041 19 C -0.232 4.232 20 H 0.109 0.891 21 H 0.132 0.868 22 H 0.157 0.843 23 H 0.193 0.807 24 H 0.183 0.817 25 H 0.131 0.869 26 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.287 -5.981 1.545 6.587 hybrid contribution 0.033 1.449 0.642 1.585 sum -2.255 -4.532 2.187 5.514 Atomic orbital electron populations 1.69859 1.09414 1.31840 1.30895 1.27026 0.95563 1.05249 0.90736 0.85039 0.79182 0.74851 0.79793 1.18599 1.18813 1.17553 1.20248 0.98945 0.92113 1.37959 0.88945 1.18250 0.90646 0.93583 0.87099 1.21321 1.05318 0.92774 1.08366 1.20585 0.91842 0.98210 0.91766 1.29274 1.16347 1.16100 1.25802 1.04814 0.75500 0.74156 0.76127 1.93468 1.78356 1.84566 1.40590 1.93502 1.55251 1.59404 1.87258 1.31418 1.05372 0.97152 1.21934 1.92831 1.66318 1.59819 1.98057 1.20493 0.96811 0.92036 0.94768 1.21359 1.01265 0.97098 1.03481 0.89068 0.86807 0.84329 0.80709 0.81691 0.86906 0.87383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.95 10.95 21.83 0.24 -38.71 15 2 C 0.03 1.57 5.14 85.26 0.44 2.00 15 3 Si 0.99 34.82 29.60 68.60 2.03 36.85 15 4 H -0.26 -9.04 7.11 99.48 0.71 -8.33 15 5 H -0.26 -8.75 7.11 99.48 0.71 -8.05 15 6 H -0.25 -8.52 7.11 99.48 0.71 -7.81 15 7 C -0.47 -23.38 9.05 23.46 0.21 -23.17 15 8 H 0.09 4.36 7.91 -2.91 -0.02 4.34 15 9 C 0.11 5.61 5.57 -21.29 -0.12 5.49 15 10 C -0.26 -12.06 9.80 22.73 0.22 -11.84 15 11 C 0.00 -0.20 9.44 22.22 0.21 0.01 15 12 C -0.78 -33.00 5.68 22.46 0.13 -32.88 15 13 S 2.51 82.44 5.59 -56.49 -0.32 82.12 15 14 O -0.97 -38.40 17.09 -127.65 -2.18 -40.58 15 15 O -0.96 -33.55 17.10 -127.65 -2.18 -35.74 15 16 C -0.41 -9.50 8.35 113.37 0.95 -8.56 15 17 F -0.19 -5.84 17.40 44.97 0.78 -5.06 15 18 C -0.02 -1.02 9.44 22.22 0.21 -0.81 15 19 C -0.21 -11.06 8.70 22.73 0.20 -10.87 15 20 H 0.30 12.96 8.30 -92.71 -0.77 12.19 15 21 H 0.11 4.85 8.06 -2.91 -0.02 4.83 15 22 H 0.14 4.82 7.55 -2.91 -0.02 4.80 15 23 H 0.18 2.37 8.14 -2.39 -0.02 2.35 15 24 H 0.17 2.90 8.14 -2.39 -0.02 2.89 15 25 H 0.11 5.05 7.54 -2.91 -0.02 5.02 15 26 H 0.11 5.82 6.16 -2.91 -0.02 5.80 15 Total: -1.00 -65.72 252.03 2.02 -63.70 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 1.20 Total: 18.03 kcal Atomic # 6 Polarization: -83.06 SS G_CDS: 2.45 Total: -80.61 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.24 Total: -38.71 kcal Atomic # 8 Polarization: -71.95 SS G_CDS: -4.37 Total: -76.32 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 0.78 Total: -5.06 kcal Atomic # 14 Polarization: 34.82 SS G_CDS: 2.03 Total: 36.85 kcal Atomic # 16 Polarization: 82.44 SS G_CDS: -0.32 Total: 82.12 kcal Total: -65.72 2.02 -63.70 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261109963.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.128 kcal (2) G-P(sol) polarization free energy of solvation -65.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds