Wall clock time and date at job start Mon Mar 30 2020 04:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99934 * 2 1 4 4 H 1.48496 * 109.47504 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47073 * 300.00448 * 3 2 1 6 6 H 1.48509 * 109.47101 * 60.00010 * 3 2 1 7 7 C 1.37875 * 120.00361 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00123 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99784 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46896 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.46839 * 179.97438 * 10 9 7 12 12 C 1.34953 * 126.02308 * 125.03021 * 11 10 9 13 13 C 1.35310 * 107.75848 * 180.02562 * 12 11 10 14 14 C 1.39943 * 107.91366 * 359.97438 * 13 12 11 15 15 Br 1.89103 * 125.91082 * 180.02562 * 14 13 12 16 16 N 1.30894 * 108.18303 * 0.02562 * 14 13 12 17 17 H 0.97001 * 120.00346 * 359.97438 * 1 2 3 18 18 H 1.08997 * 109.46691 * 60.00200 * 9 7 2 19 19 H 1.08996 * 109.47085 * 300.00292 * 9 7 2 20 20 H 1.09001 * 109.46804 * 60.00306 * 10 9 7 21 21 H 1.08996 * 109.47350 * 300.00599 * 10 9 7 22 22 H 1.07996 * 126.12068 * 359.96131 * 12 11 10 23 23 H 1.07997 * 126.04579 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 7 1.5129 -4.9307 -0.0012 12 6 1.6577 -5.9312 -0.8953 13 6 0.8044 -6.9221 -0.5476 14 6 0.1145 -6.5133 0.5993 15 35 -1.2028 -7.5130 1.5166 16 7 0.5387 -5.3193 0.9273 17 1 -0.4851 0.8400 0.0004 18 1 0.6242 -2.5566 -0.8903 19 1 0.6248 -2.5571 0.8896 20 1 2.8727 -3.6046 0.8878 21 1 2.8714 -3.6038 -0.8922 22 1 2.3329 -5.9391 -1.7381 23 1 0.6781 -7.8622 -1.0638 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306227971.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:07 Heat of formation + Delta-G solvation = 48.051825 kcal Electronic energy + Delta-G solvation = -10188.315989 eV Core-core repulsion = 8083.504558 eV Total energy + Delta-G solvation = -2104.811431 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 243.991 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.14731 -36.22563 -34.37800 -32.48596 -31.14436 -30.29342 -26.72145 -23.59723 -22.16733 -21.22618 -18.82085 -17.68058 -16.68658 -16.21959 -15.40776 -15.04759 -14.55681 -14.17941 -13.86624 -13.50461 -12.96264 -12.65890 -12.34893 -12.14907 -11.83248 -11.64982 -11.39650 -11.25277 -10.63976 -10.26702 -9.56585 -8.25728 -6.40057 0.18277 0.85153 1.41281 1.42220 1.55437 1.61940 1.88445 2.39681 3.09046 3.68392 4.05618 4.36624 4.52058 4.65705 4.69888 4.81986 5.28999 5.38390 5.47131 5.69802 5.99600 6.16230 6.54307 6.77357 7.31050 8.86924 Molecular weight = 243.99amu Principal moments of inertia in cm(-1) A = 0.055523 B = 0.005314 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.178064 B = 5267.693277 C = 5644.232546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.975 3.025 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.283 1.283 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.024 3.976 10 C 0.142 3.858 11 N -0.357 5.357 12 C 0.067 3.933 13 C -0.258 4.258 14 C 0.042 3.958 15 Br 0.033 6.967 16 N -0.313 5.313 17 H 0.264 0.736 18 H -0.011 1.011 19 H -0.011 1.011 20 H 0.082 0.918 21 H 0.126 0.874 22 H 0.225 0.775 23 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.358 -16.001 -1.310 16.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.799 3.201 4 H -0.176 1.176 5 H -0.204 1.204 6 H -0.209 1.209 7 C -0.581 4.581 8 H 0.097 0.903 9 C -0.014 4.014 10 C 0.023 3.977 11 N -0.140 5.140 12 C -0.080 4.080 13 C -0.289 4.289 14 C -0.201 4.201 15 Br 0.115 6.885 16 N -0.139 5.139 17 H 0.073 0.927 18 H 0.008 0.992 19 H 0.008 0.992 20 H 0.100 0.900 21 H 0.144 0.856 22 H 0.241 0.759 23 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 1.728 -15.157 -0.157 15.256 hybrid contribution 0.126 0.601 -0.528 0.810 sum 1.854 -14.556 -0.685 14.690 Atomic orbital electron populations 1.70153 1.08259 1.27961 1.51027 1.26086 0.95716 1.03922 0.94357 0.85248 0.79320 0.77991 0.77539 1.17580 1.20436 1.20909 1.21541 0.94088 0.91028 1.51418 0.90325 1.19132 0.94342 0.92651 0.95253 1.22114 0.93441 0.77677 1.04481 1.49232 1.29112 1.15536 1.20127 1.23459 1.00983 0.87221 0.96385 1.21669 1.03102 1.04245 0.99860 1.24257 1.00838 0.95243 0.99761 1.96631 1.48754 1.66683 1.76476 1.77483 1.06735 1.13654 1.16008 0.92724 0.99218 0.99232 0.89978 0.85631 0.75899 0.79866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.28 13.29 21.45 0.28 -57.00 14 2 C 0.00 -0.15 5.46 84.65 0.46 0.32 14 3 Si 0.98 42.98 29.54 68.60 2.03 45.01 14 4 H -0.25 -10.25 7.11 99.48 0.71 -9.54 14 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 14 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 14 7 C -0.54 -29.45 9.11 25.60 0.23 -29.21 14 8 H 0.08 3.88 7.74 -2.91 -0.02 3.86 14 9 C 0.02 1.26 5.16 29.85 0.15 1.41 14 10 C 0.14 5.50 6.45 86.38 0.56 6.05 14 11 N -0.36 -13.32 3.68 -348.07 -1.28 -14.60 14 12 C 0.07 1.84 11.45 83.54 0.96 2.79 14 13 C -0.26 -7.15 10.78 22.01 0.24 -6.92 14 14 C 0.04 1.45 7.71 85.25 0.66 2.11 14 15 Br 0.03 0.95 34.11 -20.37 -0.69 0.25 14 16 N -0.31 -13.15 12.42 -52.94 -0.66 -13.81 14 17 H 0.26 15.18 8.31 -92.71 -0.77 14.41 14 18 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 14 19 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 14 20 H 0.08 3.08 8.14 -2.39 -0.02 3.06 14 21 H 0.13 3.90 8.07 -2.39 -0.02 3.88 14 22 H 0.22 3.77 8.06 -2.91 -0.02 3.75 14 23 H 0.18 3.69 8.06 -2.91 -0.02 3.66 14 Total: -1.00 -68.96 235.13 4.14 -64.83 By element: Atomic # 1 Polarization: -2.44 SS G_CDS: 1.20 Total: -1.24 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: 3.26 Total: -23.44 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -1.65 Total: -85.40 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 35 Polarization: 0.95 SS G_CDS: -0.69 Total: 0.25 kcal Total: -68.96 4.14 -64.83 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306227971.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.877 kcal (2) G-P(sol) polarization free energy of solvation -68.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds