Wall clock time and date at job start Mon Mar 30 2020 03:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47322 * 2 1 4 4 C 1.50696 * 109.47063 * 240.00487 * 2 1 3 5 5 H 1.08007 * 120.00096 * 239.99633 * 4 2 1 6 6 C 1.37879 * 120.00373 * 59.99753 * 4 2 1 7 7 N 1.31513 * 119.99650 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00098 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47400 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46947 * 120.00428 * 8 6 4 11 11 H 1.48503 * 109.47322 * 239.99805 * 8 6 4 12 12 N 1.46897 * 109.47224 * 120.00094 * 2 1 3 13 13 C 1.46894 * 111.00541 * 274.99806 * 12 2 1 14 14 C 1.52996 * 109.47569 * 179.97438 * 13 12 2 15 15 C 1.53001 * 109.47396 * 180.02562 * 14 13 12 16 16 O 1.42893 * 109.47133 * 180.02562 * 15 14 13 17 17 C 1.42905 * 113.99965 * 179.97438 * 16 15 14 18 18 H 1.09004 * 110.45767 * 328.85620 * 17 16 15 19 19 C 1.54507 * 110.51430 * 206.09545 * 17 16 15 20 20 C 1.54477 * 104.06510 * 241.35656 * 19 17 16 21 21 O 1.44688 * 104.83958 * 23.98057 * 20 19 17 22 22 C 1.44428 * 105.13885 * 319.51776 * 21 20 19 23 23 H 1.08999 * 109.47197 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46785 * 299.99969 * 1 2 3 25 25 H 1.09002 * 109.47043 * 59.99689 * 1 2 3 26 26 H 0.97002 * 119.99743 * 179.97438 * 7 6 4 27 27 H 1.00898 * 110.99964 * 38.96108 * 12 2 1 28 28 H 1.09006 * 109.46674 * 60.00061 * 13 12 2 29 29 H 1.08998 * 109.47269 * 300.00343 * 13 12 2 30 30 H 1.09006 * 109.46870 * 60.00430 * 14 13 12 31 31 H 1.08998 * 109.47308 * 300.00568 * 14 13 12 32 32 H 1.09003 * 109.46820 * 59.99760 * 15 14 13 33 33 H 1.09006 * 109.46911 * 300.00571 * 15 14 13 34 34 H 1.09000 * 110.50930 * 0.02562 * 19 17 16 35 35 H 1.09006 * 110.50971 * 122.71133 * 19 17 16 36 36 H 1.08996 * 110.37125 * 142.80919 * 20 19 17 37 37 H 1.08999 * 110.37542 * 265.14907 * 20 19 17 38 38 H 1.09002 * 110.37130 * 281.60836 * 22 21 20 39 39 H 1.08999 * 110.37385 * 159.38239 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6033 8 14 2.3225 -1.1193 -4.0080 9 1 3.1474 -2.2861 -3.6039 10 1 1.1677 -1.5863 -4.8166 11 1 3.1472 -0.1854 -4.8161 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2224 2.3469 14 6 2.5951 -0.5333 3.5744 15 6 2.6600 0.4195 4.7697 16 8 3.1393 -0.2863 5.9160 17 6 3.2387 0.5171 7.0937 18 1 3.4674 1.5502 6.8319 19 6 4.3111 -0.0527 8.0489 20 6 3.5238 -0.4036 9.3308 21 8 2.1603 -0.5969 8.8869 22 6 1.9302 0.4430 7.9114 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.7094 1.1620 -3.4844 27 1 1.4496 -1.4980 1.4099 28 1 1.0871 0.6161 2.5526 29 1 2.7589 1.0461 2.1182 30 1 3.5905 -0.9274 3.3690 31 1 1.9185 -1.3567 3.8029 32 1 1.6645 0.8132 4.9749 33 1 3.3365 1.2432 4.5414 34 1 4.7658 -0.9470 7.6227 35 1 5.0715 0.6990 8.2614 36 1 3.9113 -1.3203 9.7751 37 1 3.5770 0.4175 10.0456 38 1 1.7390 1.3940 8.4086 39 1 1.0933 0.1786 7.2651 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308833030.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:28 Heat of formation + Delta-G solvation = -101.529051 kcal Electronic energy + Delta-G solvation = -17333.897057 eV Core-core repulsion = 14469.243028 eV Total energy + Delta-G solvation = -2864.654029 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.85092 -37.47150 -36.16543 -33.34154 -31.85841 -30.87632 -28.92583 -27.73264 -25.15015 -24.07938 -22.96361 -21.54419 -20.87970 -20.15255 -17.39678 -16.71624 -16.24970 -16.05156 -15.54823 -15.28760 -14.75100 -14.31122 -13.96033 -13.54698 -13.17384 -12.94241 -12.34796 -12.30751 -11.85266 -11.78127 -11.67902 -11.35965 -11.27050 -10.98497 -10.90055 -10.77719 -10.60478 -10.34593 -10.19870 -10.10813 -9.82550 -9.51873 -8.97916 -8.35384 -7.22207 -5.97366 -4.00406 3.32846 3.40333 3.43538 3.46929 3.67413 4.27255 4.45870 4.54595 4.71872 4.78126 4.98639 5.10944 5.12571 5.26819 5.34315 5.35839 5.41076 5.43236 5.52144 5.63381 5.73819 5.75831 5.96516 6.10437 6.41943 6.48755 6.55024 6.70088 6.85258 7.10726 7.15005 7.38306 7.74975 7.90545 8.28852 8.55458 8.63660 9.07463 9.65061 11.09855 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.063731 B = 0.003197 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.242419 B = 8757.218154 C = 8956.756499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.210 3.790 3 H 0.033 0.967 4 C -0.494 4.494 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.684 5.684 13 C 0.064 3.936 14 C -0.114 4.114 15 C 0.062 3.938 16 O -0.372 6.372 17 C 0.055 3.945 18 H 0.076 0.924 19 C -0.154 4.154 20 C 0.044 3.956 21 O -0.370 6.370 22 C 0.022 3.978 23 H 0.028 0.972 24 H 0.004 0.996 25 H 0.089 0.911 26 H 0.259 0.741 27 H 0.326 0.674 28 H 0.018 0.982 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.836 1.588 20.668 21.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.103 3.897 3 H 0.051 0.949 4 C -0.533 4.533 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.212 1.212 12 N -0.314 5.314 13 C -0.066 4.066 14 C -0.152 4.152 15 C -0.015 4.015 16 O -0.291 6.291 17 C -0.003 4.003 18 H 0.094 0.906 19 C -0.192 4.192 20 C -0.033 4.033 21 O -0.289 6.289 22 C -0.055 4.055 23 H 0.047 0.953 24 H 0.023 0.977 25 H 0.108 0.892 26 H 0.068 0.932 27 H 0.142 0.858 28 H 0.036 0.964 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.331 1.428 20.414 20.917 hybrid contribution -0.682 0.260 -0.751 1.047 sum 3.650 1.688 19.663 20.070 Atomic orbital electron populations 1.22434 1.00722 0.99241 1.00459 1.19183 0.89604 0.94409 0.86543 0.94926 1.21223 1.30044 1.12415 0.89612 0.91845 1.24965 0.95367 0.95236 0.99092 1.69897 1.37495 1.23266 1.23214 0.86443 0.78505 0.79667 0.82796 1.19695 1.21216 1.21153 1.60770 1.58179 1.09080 1.03386 1.21762 0.98256 0.96050 0.90552 1.21510 1.03293 0.98238 0.92181 1.22618 0.97843 0.95349 0.85715 1.88000 1.86464 1.37018 1.17613 1.23474 0.94739 0.95216 0.86905 0.90566 1.23060 0.97984 1.03126 0.94985 1.23466 0.82332 1.01777 0.95677 1.89220 1.29286 1.51908 1.58452 1.23998 0.98894 0.91654 0.90983 0.95295 0.97660 0.89249 0.93151 0.85782 0.96401 0.91734 0.90452 0.91613 0.93514 0.93137 0.89011 0.89648 0.88828 0.92198 0.91643 0.88437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 8.94 37.16 0.33 -3.79 16 2 C 0.21 5.36 2.57 -68.87 -0.18 5.18 16 3 H 0.03 0.91 7.80 -51.93 -0.40 0.50 16 4 C -0.49 -13.88 8.84 -34.44 -0.30 -14.19 16 5 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 6 C 0.05 1.50 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -25.93 11.32 55.43 0.63 -25.31 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 N -0.68 -14.78 6.23 -107.96 -0.67 -15.45 16 13 C 0.06 1.14 5.48 -3.83 -0.02 1.12 16 14 C -0.11 -1.70 5.84 -26.73 -0.16 -1.86 16 15 C 0.06 0.78 5.80 37.16 0.22 0.99 16 16 O -0.37 -4.86 9.98 -35.23 -0.35 -5.22 16 17 C 0.06 0.55 3.58 -25.16 -0.09 0.46 16 18 H 0.08 0.63 7.86 -51.93 -0.41 0.22 16 19 C -0.15 -1.29 6.90 -25.17 -0.17 -1.46 16 20 C 0.04 0.36 7.63 37.93 0.29 0.65 16 21 O -0.37 -4.34 11.67 -35.23 -0.41 -4.75 16 22 C 0.02 0.22 7.37 37.94 0.28 0.50 16 23 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 24 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 25 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.33 6.69 8.47 -39.29 -0.33 6.36 16 28 H 0.02 0.31 7.44 -51.93 -0.39 -0.07 16 29 H 0.06 1.17 8.06 -51.93 -0.42 0.75 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.59 8.10 -51.93 -0.42 0.17 16 34 H 0.09 0.86 8.00 -51.93 -0.42 0.44 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.10 1.01 8.09 -51.93 -0.42 0.59 16 LS Contribution 316.91 15.07 4.78 4.78 Total: -1.00 -30.46 316.91 -7.79 -38.25 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.84 Total: 2.03 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: 0.10 Total: -10.99 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: -0.05 Total: -40.76 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -0.76 Total: -9.97 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.46 -7.79 -38.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308833030.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.277 kcal (2) G-P(sol) polarization free energy of solvation -30.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds