Wall clock time and date at job start Mon Mar 30 2020 03:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47322 * 2 1 4 4 C 1.50696 * 109.47063 * 240.00487 * 2 1 3 5 5 H 1.08007 * 120.00096 * 239.99633 * 4 2 1 6 6 C 1.37879 * 120.00373 * 59.99753 * 4 2 1 7 7 N 1.31513 * 119.99650 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00098 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47400 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46947 * 120.00428 * 8 6 4 11 11 H 1.48503 * 109.47322 * 239.99805 * 8 6 4 12 12 N 1.46897 * 109.47224 * 120.00094 * 2 1 3 13 13 C 1.46894 * 111.00541 * 274.99806 * 12 2 1 14 14 C 1.52996 * 109.47569 * 179.97438 * 13 12 2 15 15 C 1.53001 * 109.47396 * 180.02562 * 14 13 12 16 16 O 1.42893 * 109.47133 * 180.02562 * 15 14 13 17 17 C 1.42905 * 113.99965 * 179.97438 * 16 15 14 18 18 H 1.09004 * 110.45767 * 328.85620 * 17 16 15 19 19 C 1.54507 * 110.51430 * 206.09545 * 17 16 15 20 20 C 1.54477 * 104.06510 * 241.35656 * 19 17 16 21 21 O 1.44688 * 104.83958 * 23.98057 * 20 19 17 22 22 C 1.44428 * 105.13885 * 319.51776 * 21 20 19 23 23 H 1.08999 * 109.47197 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46785 * 299.99969 * 1 2 3 25 25 H 1.09002 * 109.47043 * 59.99689 * 1 2 3 26 26 H 0.97002 * 119.99743 * 179.97438 * 7 6 4 27 27 H 1.00898 * 110.99964 * 38.96108 * 12 2 1 28 28 H 1.09006 * 109.46674 * 60.00061 * 13 12 2 29 29 H 1.08998 * 109.47269 * 300.00343 * 13 12 2 30 30 H 1.09006 * 109.46870 * 60.00430 * 14 13 12 31 31 H 1.08998 * 109.47308 * 300.00568 * 14 13 12 32 32 H 1.09003 * 109.46820 * 59.99760 * 15 14 13 33 33 H 1.09006 * 109.46911 * 300.00571 * 15 14 13 34 34 H 1.09000 * 110.50930 * 0.02562 * 19 17 16 35 35 H 1.09006 * 110.50971 * 122.71133 * 19 17 16 36 36 H 1.08996 * 110.37125 * 142.80919 * 20 19 17 37 37 H 1.08999 * 110.37542 * 265.14907 * 20 19 17 38 38 H 1.09002 * 110.37130 * 281.60836 * 22 21 20 39 39 H 1.08999 * 110.37385 * 159.38239 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6033 8 14 2.3225 -1.1193 -4.0080 9 1 3.1474 -2.2861 -3.6039 10 1 1.1677 -1.5863 -4.8166 11 1 3.1472 -0.1854 -4.8161 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2224 2.3469 14 6 2.5951 -0.5333 3.5744 15 6 2.6600 0.4195 4.7697 16 8 3.1393 -0.2863 5.9160 17 6 3.2387 0.5171 7.0937 18 1 3.4674 1.5502 6.8319 19 6 4.3111 -0.0527 8.0489 20 6 3.5238 -0.4036 9.3308 21 8 2.1603 -0.5969 8.8869 22 6 1.9302 0.4430 7.9114 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.7094 1.1620 -3.4844 27 1 1.4496 -1.4980 1.4099 28 1 1.0871 0.6161 2.5526 29 1 2.7589 1.0461 2.1182 30 1 3.5905 -0.9274 3.3690 31 1 1.9185 -1.3567 3.8029 32 1 1.6645 0.8132 4.9749 33 1 3.3365 1.2432 4.5414 34 1 4.7658 -0.9470 7.6227 35 1 5.0715 0.6990 8.2614 36 1 3.9113 -1.3203 9.7751 37 1 3.5770 0.4175 10.0456 38 1 1.7390 1.3940 8.4086 39 1 1.0933 0.1786 7.2651 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308833030.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:28 Heat of formation + Delta-G solvation = -122.974100 kcal Electronic energy + Delta-G solvation = -17334.826984 eV Core-core repulsion = 14469.243028 eV Total energy + Delta-G solvation = -2865.583956 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.61444 -38.55694 -37.73633 -35.07265 -33.22316 -32.01903 -29.83978 -29.22109 -27.24911 -25.38701 -23.73132 -22.52345 -22.11336 -21.92633 -18.43281 -18.12610 -17.44831 -16.96902 -16.74656 -16.64267 -16.13377 -15.59554 -15.30831 -15.00405 -14.56901 -14.13919 -13.61590 -13.54720 -13.31833 -12.98818 -12.91522 -12.72203 -12.64092 -12.48087 -12.27182 -12.20293 -12.13007 -11.81752 -11.72426 -11.66661 -11.02633 -10.99226 -10.49477 -10.35742 -8.98058 -8.10351 -6.21534 1.42317 1.43985 1.56744 2.43207 2.55920 3.00577 3.17997 3.56525 3.71769 3.85119 4.01894 4.07171 4.20015 4.26569 4.29064 4.45879 4.49773 4.53871 4.63887 4.71760 4.73802 4.79386 4.80693 4.87550 4.92319 5.05949 5.08582 5.20067 5.25376 5.43248 5.69208 5.74395 5.81894 6.26181 6.29488 6.64165 6.82368 6.93948 7.48697 8.95512 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.063731 B = 0.003197 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.242419 B = 8757.218154 C = 8956.756499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.214 3.786 3 H 0.003 0.997 4 C -0.517 4.517 5 H 0.054 0.946 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.962 3.038 9 H -0.269 1.269 10 H -0.279 1.279 11 H -0.281 1.281 12 N -0.692 5.692 13 C 0.068 3.932 14 C -0.103 4.103 15 C 0.067 3.933 16 O -0.394 6.394 17 C 0.046 3.954 18 H 0.097 0.903 19 C -0.152 4.152 20 C 0.040 3.960 21 O -0.403 6.403 22 C 0.019 3.981 23 H 0.032 0.968 24 H 0.026 0.974 25 H 0.062 0.938 26 H 0.261 0.739 27 H 0.332 0.668 28 H 0.024 0.976 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.332 1.780 21.623 22.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.106 3.894 3 H 0.021 0.979 4 C -0.556 4.556 5 H 0.072 0.928 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.788 3.212 9 H -0.194 1.194 10 H -0.205 1.205 11 H -0.207 1.207 12 N -0.322 5.322 13 C -0.062 4.062 14 C -0.141 4.141 15 C -0.009 4.009 16 O -0.314 6.314 17 C -0.012 4.012 18 H 0.115 0.885 19 C -0.189 4.189 20 C -0.036 4.036 21 O -0.322 6.322 22 C -0.057 4.057 23 H 0.051 0.949 24 H 0.045 0.955 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.149 0.851 28 H 0.042 0.958 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.129 0.871 36 H 0.118 0.882 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.832 1.617 21.393 21.992 hybrid contribution -0.823 0.215 -0.972 1.292 sum 4.009 1.832 20.421 20.891 Atomic orbital electron populations 1.22246 0.99919 0.99314 1.00168 1.18954 0.90123 0.92776 0.87567 0.97866 1.21513 1.30408 1.12491 0.91162 0.92783 1.25736 0.95457 0.95907 1.01947 1.70014 1.38094 1.24256 1.23976 0.85444 0.78082 0.78586 0.79112 1.19357 1.20529 1.20656 1.60632 1.58054 1.09765 1.03707 1.21763 0.98608 0.95559 0.90275 1.21327 1.02360 0.98382 0.92045 1.22487 0.98875 0.94641 0.84937 1.87960 1.86619 1.38323 1.18501 1.23757 0.95390 0.96040 0.85993 0.88510 1.23101 0.98099 1.03217 0.94495 1.23675 0.80808 1.03100 0.96005 1.89180 1.31140 1.52924 1.58988 1.24089 0.98502 0.92269 0.90885 0.94915 0.95484 0.91892 0.92963 0.85081 0.95779 0.92319 0.91485 0.91706 0.92376 0.92056 0.90473 0.87058 0.88171 0.89957 0.89274 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.62 8.94 71.98 0.64 -6.98 16 2 C 0.21 11.01 2.57 44.17 0.11 11.13 16 3 H 0.00 0.19 7.80 -2.38 -0.02 0.17 16 4 C -0.52 -29.26 8.84 25.60 0.23 -29.04 16 5 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.42 5.30 84.66 0.45 0.87 16 7 N -0.92 -53.58 11.32 21.45 0.24 -53.34 16 8 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 N -0.69 -29.74 6.23 -495.48 -3.09 -32.82 16 13 C 0.07 2.36 5.48 86.30 0.47 2.83 16 14 C -0.10 -2.98 5.84 30.59 0.18 -2.80 16 15 C 0.07 1.59 5.80 71.98 0.42 2.01 16 16 O -0.39 -9.80 9.98 -148.98 -1.49 -11.29 16 17 C 0.05 0.83 3.58 31.61 0.11 0.94 16 18 H 0.10 1.32 7.86 -2.38 -0.02 1.30 16 19 C -0.15 -2.23 6.90 31.61 0.22 -2.01 16 20 C 0.04 0.58 7.63 72.48 0.55 1.14 16 21 O -0.40 -8.99 11.67 -148.98 -1.74 -10.73 16 22 C 0.02 0.35 7.37 72.49 0.53 0.89 16 23 H 0.03 1.51 8.13 -2.39 -0.02 1.49 16 24 H 0.03 1.14 7.45 -2.38 -0.02 1.13 16 25 H 0.06 3.40 6.07 -2.39 -0.01 3.39 16 26 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 27 H 0.33 13.48 8.47 -89.70 -0.76 12.72 16 28 H 0.02 0.82 7.44 -2.38 -0.02 0.80 16 29 H 0.06 2.10 8.06 -2.39 -0.02 2.09 16 30 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.31 8.10 -2.38 -0.02 1.29 16 34 H 0.08 1.36 8.00 -2.39 -0.02 1.34 16 35 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.10 1.26 8.14 -2.39 -0.02 1.25 16 37 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.71 8.09 -2.39 -0.02 1.69 16 Total: -1.00 -64.80 316.91 0.12 -64.68 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.25 Total: 18.10 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 3.92 Total: -21.03 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -2.84 Total: -86.16 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -3.23 Total: -22.01 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -64.80 0.12 -64.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308833030.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.296 kcal (2) G-P(sol) polarization free energy of solvation -64.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds