Wall clock time and date at job start Mon Mar 30 2020 03:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.50696 * 109.47391 * 239.99666 * 2 1 3 5 5 H 1.07997 * 120.00579 * 240.00382 * 4 2 1 6 6 C 1.37877 * 119.99887 * 59.99863 * 4 2 1 7 7 N 1.31517 * 120.00053 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00159 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47227 * 90.00029 * 8 6 4 10 10 H 1.48503 * 109.47044 * 210.00497 * 8 6 4 11 11 H 1.48501 * 109.46849 * 329.99872 * 8 6 4 12 12 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 13 13 C 1.46901 * 110.99793 * 275.00325 * 12 2 1 14 14 C 1.53000 * 109.46769 * 180.02562 * 13 12 2 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 12 16 16 O 1.42898 * 109.47145 * 179.97438 * 15 14 13 17 17 C 1.42902 * 114.00186 * 179.97438 * 16 15 14 18 18 H 1.09003 * 110.75059 * 32.01689 * 17 16 15 19 19 C 1.55299 * 110.85069 * 155.71189 * 17 16 15 20 20 C 1.54944 * 100.94278 * 152.32356 * 19 17 16 21 21 O 1.43645 * 105.13694 * 323.55421 * 20 19 17 22 22 C 1.43233 * 109.97110 * 24.43052 * 21 20 19 23 23 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 24 24 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 26 26 H 0.97002 * 119.99751 * 180.02562 * 7 6 4 27 27 H 1.00898 * 110.99995 * 38.95403 * 12 2 1 28 28 H 1.09002 * 109.47401 * 59.99808 * 13 12 2 29 29 H 1.09001 * 109.46874 * 299.99821 * 13 12 2 30 30 H 1.09001 * 109.47194 * 299.99524 * 14 13 12 31 31 H 1.08992 * 109.47399 * 59.99697 * 14 13 12 32 32 H 1.09001 * 109.47109 * 299.99380 * 15 14 13 33 33 H 1.09002 * 109.47508 * 59.99571 * 15 14 13 34 34 H 1.09001 * 111.12897 * 270.24769 * 19 17 16 35 35 H 1.09006 * 111.12713 * 34.40550 * 19 17 16 36 36 H 1.09008 * 110.30914 * 204.64121 * 20 19 17 37 37 H 1.08999 * 110.39327 * 82.51793 * 20 19 17 38 38 H 1.09008 * 109.83100 * 238.77752 * 22 21 20 39 39 H 1.09000 * 109.90966 * 117.83980 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.3428 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6925 1.1995 13 6 2.0823 0.2227 2.3469 14 6 2.5961 -0.5328 3.5742 15 6 2.6608 0.4202 4.7694 16 8 3.1401 -0.2855 5.9159 17 6 3.2394 0.5180 7.0935 18 1 2.4680 1.2881 7.1017 19 6 3.1619 -0.3617 8.3709 20 6 3.9755 0.4986 9.3702 21 8 5.0322 1.0806 8.5904 22 6 4.6445 1.1463 7.2131 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.7089 1.1612 -3.4845 27 1 1.4495 -1.4979 1.4101 28 1 1.0869 0.6164 2.5525 29 1 2.7587 1.0463 2.1182 30 1 1.9201 -1.3566 3.8031 31 1 3.5915 -0.9261 3.3683 32 1 3.3367 1.2443 4.5409 33 1 1.6652 0.8132 4.9752 34 1 2.1308 -0.4809 8.7039 35 1 3.6353 -1.3304 8.2103 36 1 4.3895 -0.1287 10.1598 37 1 3.3472 1.2794 9.7986 38 1 5.3530 0.5866 6.6024 39 1 4.6140 2.1854 6.8852 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308833031.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:31 Heat of formation + Delta-G solvation = -101.993035 kcal Electronic energy + Delta-G solvation = -17275.976675 eV Core-core repulsion = 14411.302526 eV Total energy + Delta-G solvation = -2864.674149 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.88784 -37.63151 -36.21327 -33.38187 -31.89666 -30.90915 -29.04619 -27.74249 -25.16093 -24.03899 -22.70260 -21.83905 -20.96890 -20.17003 -17.55971 -16.90109 -16.24394 -15.87457 -15.56890 -15.14418 -14.75636 -14.22126 -14.04717 -13.62936 -13.38762 -13.10917 -12.63379 -12.34325 -11.91083 -11.83526 -11.70010 -11.39386 -11.20267 -11.00452 -10.90432 -10.80450 -10.62393 -10.33430 -10.13984 -9.87267 -9.83416 -9.67813 -8.99976 -8.35935 -7.24213 -5.98087 -4.01312 3.23872 3.33390 3.39584 3.44731 3.68228 4.12536 4.44880 4.54831 4.62567 4.78696 4.88408 5.08638 5.17248 5.29905 5.33553 5.34643 5.39159 5.42343 5.55372 5.61033 5.70002 5.73596 5.93485 6.07469 6.45838 6.50747 6.62458 6.68450 6.83499 7.04945 7.09348 7.36673 7.73611 7.89167 8.27584 8.53813 8.62152 9.06170 9.64142 11.09073 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.060526 B = 0.003136 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.497468 B = 8926.876626 C = 9060.283624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.033 0.967 4 C -0.495 4.495 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.273 1.273 12 N -0.684 5.684 13 C 0.064 3.936 14 C -0.114 4.114 15 C 0.062 3.938 16 O -0.370 6.370 17 C 0.056 3.944 18 H 0.078 0.922 19 C -0.153 4.153 20 C 0.051 3.949 21 O -0.381 6.381 22 C 0.027 3.973 23 H 0.089 0.911 24 H 0.028 0.972 25 H 0.004 0.996 26 H 0.259 0.741 27 H 0.325 0.675 28 H 0.018 0.982 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.155 0.494 20.477 20.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.103 3.897 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.198 1.198 12 N -0.314 5.314 13 C -0.067 4.067 14 C -0.152 4.152 15 C -0.015 4.015 16 O -0.289 6.289 17 C -0.003 4.003 18 H 0.096 0.904 19 C -0.191 4.191 20 C -0.025 4.025 21 O -0.300 6.300 22 C -0.050 4.050 23 H 0.108 0.892 24 H 0.047 0.953 25 H 0.023 0.977 26 H 0.069 0.931 27 H 0.142 0.858 28 H 0.036 0.964 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.999 0.580 20.224 20.454 hybrid contribution -1.077 -0.016 -0.786 1.333 sum 1.923 0.563 19.438 19.541 Atomic orbital electron populations 1.22434 1.00734 0.99226 1.00465 1.19179 0.89587 0.94421 0.86511 0.94905 1.21178 1.30173 1.12429 0.89617 0.91896 1.24964 0.95366 0.95207 0.99085 1.69887 1.37437 1.23216 1.23335 0.86494 0.79267 0.79222 0.82391 1.20836 1.21377 1.19835 1.60782 1.58163 1.09067 1.03378 1.21766 0.98274 0.96078 0.90535 1.21515 1.03338 0.98200 0.92177 1.22645 0.97790 0.95444 0.85640 1.87953 1.86643 1.36567 1.17768 1.23632 0.96446 0.93619 0.86593 0.90444 1.23311 1.02054 1.00280 0.93435 1.23344 0.89143 0.95717 0.94325 1.88425 1.40045 1.83401 1.18177 1.23701 0.96650 1.01039 0.83648 0.89239 0.95307 0.97672 0.93081 0.85813 0.96383 0.91679 0.91629 0.90375 0.93050 0.93298 0.89304 0.89073 0.89281 0.91952 0.89951 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 8.94 37.15 0.33 -3.76 16 2 C 0.21 5.33 2.57 -68.87 -0.18 5.16 16 3 H 0.03 0.91 7.80 -51.93 -0.40 0.51 16 4 C -0.50 -13.85 8.84 -34.44 -0.30 -14.16 16 5 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.87 11.32 55.43 0.63 -25.24 16 8 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 12 N -0.68 -14.61 6.23 -107.95 -0.67 -15.28 16 13 C 0.06 1.12 5.48 -3.82 -0.02 1.09 16 14 C -0.11 -1.66 5.84 -26.73 -0.16 -1.81 16 15 C 0.06 0.75 5.81 37.16 0.22 0.97 16 16 O -0.37 -4.61 10.08 -35.23 -0.36 -4.97 16 17 C 0.06 0.55 3.45 -24.78 -0.09 0.47 16 18 H 0.08 0.67 7.89 -51.93 -0.41 0.26 16 19 C -0.15 -1.26 6.89 -24.49 -0.17 -1.43 16 20 C 0.05 0.40 7.78 38.18 0.30 0.70 16 21 O -0.38 -4.23 11.36 -35.23 -0.40 -4.63 16 22 C 0.03 0.27 7.58 37.88 0.29 0.56 16 23 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 24 H 0.03 0.66 8.13 -51.93 -0.42 0.24 16 25 H 0.00 0.09 7.45 -51.93 -0.39 -0.29 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.33 6.58 8.47 -39.29 -0.33 6.25 16 28 H 0.02 0.31 7.44 -51.93 -0.39 -0.07 16 29 H 0.06 1.17 8.06 -51.93 -0.42 0.75 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.55 8.11 -51.93 -0.42 0.13 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.57 8.14 -51.92 -0.42 0.15 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.91 8.05 -51.92 -0.42 0.49 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 317.06 15.07 4.78 4.78 Total: -1.00 -29.84 317.06 -7.76 -37.60 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.84 Total: 1.93 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 0.12 Total: -10.78 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: -0.05 Total: -40.52 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.76 Total: -9.60 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.84 -7.76 -37.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308833031.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.395 kcal (2) G-P(sol) polarization free energy of solvation -29.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds