Wall clock time and date at job start Mon Mar 30 2020 03:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.50696 * 109.47391 * 239.99666 * 2 1 3 5 5 H 1.07997 * 120.00579 * 240.00382 * 4 2 1 6 6 C 1.37877 * 119.99887 * 59.99863 * 4 2 1 7 7 N 1.31517 * 120.00053 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00159 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47227 * 90.00029 * 8 6 4 10 10 H 1.48503 * 109.47044 * 210.00497 * 8 6 4 11 11 H 1.48501 * 109.46849 * 329.99872 * 8 6 4 12 12 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 13 13 C 1.46901 * 110.99793 * 275.00325 * 12 2 1 14 14 C 1.53000 * 109.46769 * 180.02562 * 13 12 2 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 12 16 16 O 1.42898 * 109.47145 * 179.97438 * 15 14 13 17 17 C 1.42902 * 114.00186 * 179.97438 * 16 15 14 18 18 H 1.09003 * 110.75059 * 32.01689 * 17 16 15 19 19 C 1.55299 * 110.85069 * 155.71189 * 17 16 15 20 20 C 1.54944 * 100.94278 * 152.32356 * 19 17 16 21 21 O 1.43645 * 105.13694 * 323.55421 * 20 19 17 22 22 C 1.43233 * 109.97110 * 24.43052 * 21 20 19 23 23 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 24 24 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 26 26 H 0.97002 * 119.99751 * 180.02562 * 7 6 4 27 27 H 1.00898 * 110.99995 * 38.95403 * 12 2 1 28 28 H 1.09002 * 109.47401 * 59.99808 * 13 12 2 29 29 H 1.09001 * 109.46874 * 299.99821 * 13 12 2 30 30 H 1.09001 * 109.47194 * 299.99524 * 14 13 12 31 31 H 1.08992 * 109.47399 * 59.99697 * 14 13 12 32 32 H 1.09001 * 109.47109 * 299.99380 * 15 14 13 33 33 H 1.09002 * 109.47508 * 59.99571 * 15 14 13 34 34 H 1.09001 * 111.12897 * 270.24769 * 19 17 16 35 35 H 1.09006 * 111.12713 * 34.40550 * 19 17 16 36 36 H 1.09008 * 110.30914 * 204.64121 * 20 19 17 37 37 H 1.08999 * 110.39327 * 82.51793 * 20 19 17 38 38 H 1.09008 * 109.83100 * 238.77752 * 22 21 20 39 39 H 1.09000 * 109.90966 * 117.83980 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.3428 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6925 1.1995 13 6 2.0823 0.2227 2.3469 14 6 2.5961 -0.5328 3.5742 15 6 2.6608 0.4202 4.7694 16 8 3.1401 -0.2855 5.9159 17 6 3.2394 0.5180 7.0935 18 1 2.4680 1.2881 7.1017 19 6 3.1619 -0.3617 8.3709 20 6 3.9755 0.4986 9.3702 21 8 5.0322 1.0806 8.5904 22 6 4.6445 1.1463 7.2131 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.7089 1.1612 -3.4845 27 1 1.4495 -1.4979 1.4101 28 1 1.0869 0.6164 2.5525 29 1 2.7587 1.0463 2.1182 30 1 1.9201 -1.3566 3.8031 31 1 3.5915 -0.9261 3.3683 32 1 3.3367 1.2443 4.5409 33 1 1.6652 0.8132 4.9752 34 1 2.1308 -0.4809 8.7039 35 1 3.6353 -1.3304 8.2103 36 1 4.3895 -0.1287 10.1598 37 1 3.3472 1.2794 9.7986 38 1 5.3530 0.5866 6.6024 39 1 4.6140 2.1854 6.8852 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308833031.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:30 Heat of formation + Delta-G solvation = -122.730210 kcal Electronic energy + Delta-G solvation = -17276.875906 eV Core-core repulsion = 14411.302526 eV Total energy + Delta-G solvation = -2865.573380 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.65188 -38.65609 -37.80634 -35.08879 -33.25637 -32.03753 -29.96120 -29.24285 -27.24629 -25.36131 -23.43022 -22.68594 -22.14986 -22.10100 -18.46063 -18.25862 -17.61426 -16.95149 -16.76673 -16.44464 -16.04103 -15.55940 -15.33077 -14.97251 -14.61304 -14.16495 -14.02319 -13.55577 -13.31145 -13.20973 -12.99127 -12.75449 -12.63293 -12.49557 -12.30068 -12.18784 -12.13419 -11.80702 -11.71451 -11.67792 -11.03483 -10.64293 -10.51816 -10.48932 -8.97741 -8.10207 -6.21483 1.43455 1.44090 1.55403 2.37088 2.45997 2.96643 3.18123 3.42891 3.66848 3.85869 3.94913 4.01452 4.16978 4.23742 4.28113 4.37839 4.51395 4.59050 4.66063 4.70231 4.73579 4.78808 4.80435 4.88381 4.91779 5.03118 5.08058 5.20061 5.25963 5.43579 5.69349 5.82087 5.92685 6.17689 6.27248 6.64338 6.83033 6.94188 7.48761 8.95399 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.060526 B = 0.003136 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.497468 B = 8926.876626 C = 9060.283624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.215 3.785 3 H 0.002 0.998 4 C -0.518 4.518 5 H 0.054 0.946 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.962 3.038 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.691 5.691 13 C 0.067 3.933 14 C -0.103 4.103 15 C 0.067 3.933 16 O -0.387 6.387 17 C 0.051 3.949 18 H 0.095 0.905 19 C -0.149 4.149 20 C 0.047 3.953 21 O -0.404 6.404 22 C 0.025 3.975 23 H 0.062 0.938 24 H 0.032 0.968 25 H 0.027 0.973 26 H 0.261 0.739 27 H 0.333 0.667 28 H 0.025 0.975 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.797 0.160 21.528 21.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.106 3.894 3 H 0.020 0.980 4 C -0.557 4.557 5 H 0.072 0.928 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.787 3.213 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.322 5.322 13 C -0.063 4.063 14 C -0.141 4.141 15 C -0.010 4.010 16 O -0.306 6.306 17 C -0.008 4.008 18 H 0.113 0.887 19 C -0.187 4.187 20 C -0.028 4.028 21 O -0.324 6.324 22 C -0.052 4.052 23 H 0.081 0.919 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.070 0.930 27 H 0.150 0.850 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.127 0.873 35 H 0.099 0.901 36 H 0.121 0.879 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.641 0.238 21.301 21.465 hybrid contribution -0.950 0.102 -1.035 1.408 sum 1.692 0.340 20.266 20.339 Atomic orbital electron populations 1.22242 0.99864 0.99347 1.00180 1.18947 0.90155 0.92734 0.87567 0.97963 1.21486 1.30489 1.12513 0.91173 0.92756 1.25734 0.95470 0.95882 1.01941 1.70009 1.38083 1.24229 1.24026 0.85502 0.78796 0.78223 0.78758 1.20015 1.20921 1.19570 1.60634 1.58074 1.09780 1.03669 1.21767 0.98636 0.95558 0.90334 1.21325 1.02468 0.98413 0.91872 1.22522 0.98846 0.94680 0.84964 1.87917 1.86795 1.37439 1.18446 1.23834 0.96567 0.94224 0.86147 0.88732 1.23329 1.03205 0.99500 0.92650 1.23562 0.88759 0.96336 0.94184 1.88395 1.41640 1.83811 1.18598 1.23692 0.96662 1.01395 0.83417 0.91946 0.94852 0.95427 0.92965 0.84993 0.95641 0.92531 0.91196 0.91543 0.92508 0.91809 0.87333 0.90086 0.87938 0.90217 0.91411 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.53 8.94 71.98 0.64 -6.88 16 2 C 0.21 10.94 2.57 44.16 0.11 11.05 16 3 H 0.00 0.14 7.80 -2.39 -0.02 0.12 16 4 C -0.52 -29.16 8.84 25.60 0.23 -28.93 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.43 5.30 84.65 0.45 0.88 16 7 N -0.92 -53.48 11.32 21.45 0.24 -53.24 16 8 Si 0.96 44.26 29.54 68.60 2.03 46.28 16 9 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 12 N -0.69 -29.28 6.23 -495.44 -3.09 -32.37 16 13 C 0.07 2.28 5.48 86.30 0.47 2.75 16 14 C -0.10 -2.85 5.84 30.59 0.18 -2.67 16 15 C 0.07 1.51 5.81 71.98 0.42 1.93 16 16 O -0.39 -9.01 10.08 -148.98 -1.50 -10.51 16 17 C 0.05 0.90 3.45 31.86 0.11 1.01 16 18 H 0.09 1.37 7.89 -2.39 -0.02 1.35 16 19 C -0.15 -2.15 6.89 32.05 0.22 -1.92 16 20 C 0.05 0.65 7.78 72.65 0.56 1.21 16 21 O -0.40 -8.52 11.36 -148.98 -1.69 -10.21 16 22 C 0.03 0.50 7.58 72.45 0.55 1.05 16 23 H 0.06 3.35 6.07 -2.39 -0.01 3.34 16 24 H 0.03 1.52 8.13 -2.39 -0.02 1.50 16 25 H 0.03 1.15 7.45 -2.39 -0.02 1.13 16 26 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 27 H 0.33 13.18 8.47 -89.70 -0.76 12.42 16 28 H 0.03 0.84 7.44 -2.39 -0.02 0.82 16 29 H 0.06 2.02 8.06 -2.39 -0.02 2.00 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.27 8.11 -2.39 -0.02 1.25 16 34 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.07 1.49 8.05 -2.38 -0.02 1.47 16 39 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -63.16 317.06 0.18 -62.97 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.25 Total: 17.60 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: 3.95 Total: -20.52 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -2.84 Total: -85.60 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -3.19 Total: -20.73 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -63.16 0.18 -62.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308833031.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.756 kcal (2) G-P(sol) polarization free energy of solvation -63.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds