Wall clock time and date at job start Mon Mar 30 2020 03:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46672 * 2 1 4 4 C 1.50697 * 109.47090 * 120.00283 * 2 1 3 5 5 H 1.08002 * 120.00226 * 119.99729 * 4 2 1 6 6 C 1.37883 * 120.00013 * 299.99937 * 4 2 1 7 7 N 1.31516 * 119.99783 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00239 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46955 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47292 * 119.99473 * 8 6 4 11 11 H 1.48498 * 109.47204 * 240.00254 * 8 6 4 12 12 N 1.46897 * 109.46924 * 240.00343 * 2 1 3 13 13 C 1.46890 * 111.00301 * 85.00063 * 12 2 1 14 14 C 1.53003 * 109.47374 * 180.02562 * 13 12 2 15 15 C 1.53001 * 109.47441 * 179.97438 * 14 13 12 16 16 O 1.42893 * 109.47133 * 179.97438 * 15 14 13 17 17 C 1.42905 * 113.99965 * 179.97438 * 16 15 14 18 18 H 1.09004 * 110.45767 * 328.85620 * 17 16 15 19 19 C 1.54507 * 110.51430 * 206.09545 * 17 16 15 20 20 C 1.54477 * 104.06510 * 241.35656 * 19 17 16 21 21 O 1.44688 * 104.83958 * 23.98057 * 20 19 17 22 22 C 1.44428 * 105.13885 * 319.51776 * 21 20 19 23 23 H 1.09002 * 109.47137 * 299.99838 * 1 2 3 24 24 H 1.09003 * 109.46835 * 59.99718 * 1 2 3 25 25 H 1.08995 * 109.47326 * 179.97438 * 1 2 3 26 26 H 0.96998 * 119.99929 * 179.97438 * 7 6 4 27 27 H 1.00906 * 110.99779 * 321.04099 * 12 2 1 28 28 H 1.08999 * 109.47366 * 60.00079 * 13 12 2 29 29 H 1.09002 * 109.47267 * 299.99620 * 13 12 2 30 30 H 1.09006 * 109.47077 * 59.99982 * 14 13 12 31 31 H 1.08998 * 109.47056 * 300.00148 * 14 13 12 32 32 H 1.09003 * 109.46820 * 59.99478 * 15 14 13 33 33 H 1.09006 * 109.46911 * 300.00290 * 15 14 13 34 34 H 1.09000 * 110.50930 * 0.02562 * 19 17 16 35 35 H 1.09006 * 110.50971 * 122.71133 * 19 17 16 36 36 H 1.08996 * 110.37125 * 142.80919 * 20 19 17 37 37 H 1.08999 * 110.37542 * 265.14907 * 20 19 17 38 38 H 1.09002 * 110.37130 * 281.60836 * 22 21 20 39 39 H 1.08999 * 110.37385 * 159.38239 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.1474 -2.2864 3.6037 10 1 3.1473 -0.1859 4.8160 11 1 1.1678 -1.5867 4.8164 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2226 -2.3468 14 6 2.5950 -0.5331 -3.5745 15 6 2.6598 0.4198 -4.7698 16 8 3.1391 -0.2859 -5.9161 17 6 3.2373 0.5173 -7.0940 18 1 2.4733 1.2948 -7.0898 19 6 3.1140 -0.3603 -8.3596 20 6 4.4621 -0.1613 -9.0873 21 8 5.3886 0.2351 -8.0490 22 6 4.6453 1.1428 -7.2067 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.7090 1.1613 3.4844 27 1 1.4495 -1.4979 -1.4100 28 1 2.7589 1.0462 -2.1182 29 1 1.0871 0.6163 -2.5525 30 1 1.9182 -1.3565 -3.8030 31 1 3.5903 -0.9272 -3.3692 32 1 3.3363 1.2435 -4.5414 33 1 1.6643 0.8136 -4.9749 34 1 2.9777 -1.4068 -8.0869 35 1 2.2888 -0.0169 -8.9836 36 1 4.7859 -1.0944 -9.5482 37 1 4.3757 0.6240 -9.8383 38 1 4.5870 2.1281 -7.6692 39 1 5.1091 1.2133 -6.2228 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308833033.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:36 Heat of formation + Delta-G solvation = -101.456586 kcal Electronic energy + Delta-G solvation = -17332.202760 eV Core-core repulsion = 14467.551874 eV Total energy + Delta-G solvation = -2864.650886 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.84463 -37.46875 -36.16597 -33.34033 -31.85663 -30.87531 -28.91739 -27.73289 -25.15138 -24.07725 -22.96118 -21.54135 -20.88006 -20.15545 -17.37510 -16.71981 -16.28501 -16.04725 -15.53699 -15.22468 -14.74770 -14.38872 -13.95596 -13.45683 -13.19570 -12.97137 -12.36493 -12.29045 -11.88592 -11.73477 -11.66991 -11.38402 -11.23076 -11.01480 -10.90063 -10.76952 -10.60370 -10.35119 -10.18927 -10.10753 -9.82418 -9.51536 -8.97939 -8.35256 -7.22204 -5.97264 -4.00280 3.33119 3.40589 3.43578 3.47211 3.68370 4.27521 4.46094 4.55287 4.71778 4.78245 4.98483 5.11566 5.13789 5.25964 5.34414 5.35375 5.41117 5.44077 5.53100 5.65374 5.71250 5.76465 5.96346 6.10168 6.43038 6.48784 6.55407 6.69554 6.84772 7.10394 7.15064 7.38185 7.74633 7.90670 8.28813 8.55417 8.63642 9.07637 9.65191 11.09962 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.056292 B = 0.003226 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.286416 B = 8678.576209 C = 8870.463336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.210 3.790 3 H 0.033 0.967 4 C -0.494 4.494 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.684 5.684 13 C 0.064 3.936 14 C -0.114 4.114 15 C 0.062 3.938 16 O -0.372 6.372 17 C 0.055 3.945 18 H 0.076 0.924 19 C -0.154 4.154 20 C 0.044 3.956 21 O -0.370 6.370 22 C 0.022 3.978 23 H 0.089 0.911 24 H 0.004 0.996 25 H 0.028 0.972 26 H 0.259 0.741 27 H 0.326 0.674 28 H 0.064 0.936 29 H 0.018 0.982 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.266 1.187 -21.067 21.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.051 0.949 4 C -0.533 4.533 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.314 5.314 13 C -0.066 4.066 14 C -0.152 4.152 15 C -0.015 4.015 16 O -0.291 6.291 17 C -0.003 4.003 18 H 0.094 0.906 19 C -0.192 4.192 20 C -0.033 4.033 21 O -0.288 6.288 22 C -0.055 4.055 23 H 0.108 0.892 24 H 0.023 0.977 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.142 0.858 28 H 0.083 0.917 29 H 0.036 0.964 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.140 1.124 -20.715 20.982 hybrid contribution -1.091 0.155 0.643 1.276 sum 2.049 1.278 -20.072 20.217 Atomic orbital electron populations 1.22435 1.00739 0.99216 1.00451 1.19185 0.89589 0.94423 0.86546 0.94913 1.21224 1.30044 1.12412 0.89607 0.91835 1.24966 0.95367 0.95231 0.99094 1.69896 1.37499 1.23276 1.23214 0.86441 0.78503 0.79678 0.82791 1.19687 1.21143 1.21224 1.60771 1.58166 1.09071 1.03385 1.21763 0.98235 0.96064 0.90553 1.21512 1.03325 0.98196 0.92191 1.22617 0.97597 0.95443 0.85866 1.88000 1.86571 1.36766 1.17764 1.23473 0.96713 0.93547 0.86597 0.90620 1.23059 0.98462 1.02585 0.95046 1.23462 0.88363 1.00529 0.90902 1.89226 1.35284 1.63798 1.40502 1.24003 0.92270 0.92793 0.96479 0.89242 0.97683 0.95311 0.93152 0.85808 0.91706 0.96432 0.91679 0.90386 0.93216 0.93438 0.89051 0.89696 0.88837 0.92207 0.91645 0.88308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.94 37.16 0.33 -3.77 16 2 C 0.21 5.36 2.57 -68.86 -0.18 5.18 16 3 H 0.03 0.91 7.80 -51.93 -0.40 0.51 16 4 C -0.49 -13.89 8.84 -34.44 -0.30 -14.20 16 5 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -25.94 11.32 55.43 0.63 -25.32 16 8 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 9 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 N -0.68 -14.77 6.23 -107.96 -0.67 -15.44 16 13 C 0.06 1.14 5.48 -3.83 -0.02 1.12 16 14 C -0.11 -1.70 5.84 -26.73 -0.16 -1.86 16 15 C 0.06 0.78 5.80 37.16 0.22 0.99 16 16 O -0.37 -4.87 9.98 -35.23 -0.35 -5.22 16 17 C 0.06 0.55 3.58 -25.16 -0.09 0.46 16 18 H 0.08 0.62 7.86 -51.93 -0.41 0.22 16 19 C -0.15 -1.28 6.90 -25.17 -0.17 -1.45 16 20 C 0.04 0.37 7.63 37.93 0.29 0.66 16 21 O -0.37 -4.39 11.67 -35.23 -0.41 -4.80 16 22 C 0.02 0.22 7.37 37.94 0.28 0.50 16 23 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 24 H 0.00 0.09 7.45 -51.93 -0.39 -0.29 16 25 H 0.03 0.66 8.13 -51.93 -0.42 0.24 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.33 6.66 8.47 -39.29 -0.33 6.33 16 28 H 0.06 1.18 8.06 -51.93 -0.42 0.76 16 29 H 0.02 0.31 7.44 -51.93 -0.39 -0.08 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.55 8.10 -51.93 -0.42 0.13 16 34 H 0.09 0.85 8.00 -51.93 -0.42 0.43 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.10 1.05 8.09 -51.93 -0.42 0.63 16 LS Contribution 316.91 15.07 4.78 4.78 Total: -1.00 -30.50 316.91 -7.79 -38.29 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.84 Total: 2.00 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 0.10 Total: -10.97 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: -0.05 Total: -40.76 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: -0.76 Total: -10.02 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.50 -7.79 -38.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308833033.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.167 kcal (2) G-P(sol) polarization free energy of solvation -30.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds