Wall clock time and date at job start Mon Mar 30 2020 03:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46672 * 2 1 4 4 C 1.50697 * 109.47090 * 120.00283 * 2 1 3 5 5 H 1.08002 * 120.00226 * 119.99729 * 4 2 1 6 6 C 1.37883 * 120.00013 * 299.99937 * 4 2 1 7 7 N 1.31516 * 119.99783 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00239 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46955 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47292 * 119.99473 * 8 6 4 11 11 H 1.48498 * 109.47204 * 240.00254 * 8 6 4 12 12 N 1.46897 * 109.46924 * 240.00343 * 2 1 3 13 13 C 1.46890 * 111.00301 * 85.00063 * 12 2 1 14 14 C 1.53003 * 109.47374 * 180.02562 * 13 12 2 15 15 C 1.53001 * 109.47441 * 179.97438 * 14 13 12 16 16 O 1.42893 * 109.47133 * 179.97438 * 15 14 13 17 17 C 1.42905 * 113.99965 * 179.97438 * 16 15 14 18 18 H 1.09004 * 110.45767 * 328.85620 * 17 16 15 19 19 C 1.54507 * 110.51430 * 206.09545 * 17 16 15 20 20 C 1.54477 * 104.06510 * 241.35656 * 19 17 16 21 21 O 1.44688 * 104.83958 * 23.98057 * 20 19 17 22 22 C 1.44428 * 105.13885 * 319.51776 * 21 20 19 23 23 H 1.09002 * 109.47137 * 299.99838 * 1 2 3 24 24 H 1.09003 * 109.46835 * 59.99718 * 1 2 3 25 25 H 1.08995 * 109.47326 * 179.97438 * 1 2 3 26 26 H 0.96998 * 119.99929 * 179.97438 * 7 6 4 27 27 H 1.00906 * 110.99779 * 321.04099 * 12 2 1 28 28 H 1.08999 * 109.47366 * 60.00079 * 13 12 2 29 29 H 1.09002 * 109.47267 * 299.99620 * 13 12 2 30 30 H 1.09006 * 109.47077 * 59.99982 * 14 13 12 31 31 H 1.08998 * 109.47056 * 300.00148 * 14 13 12 32 32 H 1.09003 * 109.46820 * 59.99478 * 15 14 13 33 33 H 1.09006 * 109.46911 * 300.00290 * 15 14 13 34 34 H 1.09000 * 110.50930 * 0.02562 * 19 17 16 35 35 H 1.09006 * 110.50971 * 122.71133 * 19 17 16 36 36 H 1.08996 * 110.37125 * 142.80919 * 20 19 17 37 37 H 1.08999 * 110.37542 * 265.14907 * 20 19 17 38 38 H 1.09002 * 110.37130 * 281.60836 * 22 21 20 39 39 H 1.08999 * 110.37385 * 159.38239 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.1474 -2.2864 3.6037 10 1 3.1473 -0.1859 4.8160 11 1 1.1678 -1.5867 4.8164 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2226 -2.3468 14 6 2.5950 -0.5331 -3.5745 15 6 2.6598 0.4198 -4.7698 16 8 3.1391 -0.2859 -5.9161 17 6 3.2373 0.5173 -7.0940 18 1 2.4733 1.2948 -7.0898 19 6 3.1140 -0.3603 -8.3596 20 6 4.4621 -0.1613 -9.0873 21 8 5.3886 0.2351 -8.0490 22 6 4.6453 1.1428 -7.2067 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.7090 1.1613 3.4844 27 1 1.4495 -1.4979 -1.4100 28 1 2.7589 1.0462 -2.1182 29 1 1.0871 0.6163 -2.5525 30 1 1.9182 -1.3565 -3.8030 31 1 3.5903 -0.9272 -3.3692 32 1 3.3363 1.2435 -4.5414 33 1 1.6643 0.8136 -4.9749 34 1 2.9777 -1.4068 -8.0869 35 1 2.2888 -0.0169 -8.9836 36 1 4.7859 -1.0944 -9.5482 37 1 4.3757 0.6240 -9.8383 38 1 4.5870 2.1281 -7.6692 39 1 5.1091 1.2133 -6.2228 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308833033.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:35 Heat of formation + Delta-G solvation = -122.972040 kcal Electronic energy + Delta-G solvation = -17333.135740 eV Core-core repulsion = 14467.551874 eV Total energy + Delta-G solvation = -2865.583867 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.61320 -38.55688 -37.73620 -35.07223 -33.22298 -32.01811 -29.83786 -29.22002 -27.24838 -25.38665 -23.73235 -22.52148 -22.11613 -21.92553 -18.41947 -18.12138 -17.45023 -17.09543 -16.75341 -16.47714 -16.08290 -15.73947 -15.31217 -14.94772 -14.57113 -14.08618 -13.72708 -13.54153 -13.23198 -13.03677 -12.90607 -12.76373 -12.56650 -12.46828 -12.29625 -12.19801 -12.14019 -11.83795 -11.70052 -11.67042 -11.02680 -10.98964 -10.49482 -10.35695 -8.97646 -8.10437 -6.21572 1.42172 1.43888 1.56603 2.43153 2.55952 3.00878 3.17882 3.56873 3.71123 3.85876 4.02474 4.07044 4.19493 4.25662 4.29626 4.45420 4.51411 4.54284 4.63938 4.70747 4.74176 4.79044 4.80763 4.88257 4.92329 5.06641 5.08013 5.20271 5.25481 5.43521 5.69346 5.74854 5.82083 6.26310 6.29574 6.64359 6.82879 6.94138 7.48661 8.95394 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.056292 B = 0.003226 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.286416 B = 8678.576209 C = 8870.463336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.214 3.786 3 H 0.003 0.997 4 C -0.517 4.517 5 H 0.054 0.946 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.962 3.038 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.279 1.279 12 N -0.692 5.692 13 C 0.068 3.932 14 C -0.103 4.103 15 C 0.067 3.933 16 O -0.394 6.394 17 C 0.047 3.953 18 H 0.098 0.902 19 C -0.151 4.151 20 C 0.040 3.960 21 O -0.403 6.403 22 C 0.018 3.982 23 H 0.062 0.938 24 H 0.027 0.973 25 H 0.032 0.968 26 H 0.261 0.739 27 H 0.333 0.667 28 H 0.056 0.944 29 H 0.026 0.974 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.912 1.163 -22.254 22.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.106 3.894 3 H 0.021 0.979 4 C -0.556 4.556 5 H 0.072 0.928 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.787 3.213 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.205 1.205 12 N -0.322 5.322 13 C -0.062 4.062 14 C -0.141 4.141 15 C -0.009 4.009 16 O -0.314 6.314 17 C -0.011 4.011 18 H 0.116 0.884 19 C -0.188 4.188 20 C -0.037 4.037 21 O -0.323 6.323 22 C -0.058 4.058 23 H 0.081 0.919 24 H 0.046 0.954 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.150 0.850 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.130 0.870 36 H 0.118 0.882 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.785 1.096 -21.928 22.131 hybrid contribution -0.965 0.177 0.936 1.356 sum 1.821 1.273 -20.991 21.109 Atomic orbital electron populations 1.22242 0.99834 0.99342 1.00188 1.18955 0.90184 0.92740 0.87551 0.97931 1.21515 1.30410 1.12484 0.91184 0.92815 1.25733 0.95462 0.95904 1.01931 1.70012 1.38088 1.24249 1.23974 0.85448 0.78093 0.78582 0.79133 1.19392 1.20694 1.20465 1.60626 1.58097 1.09790 1.03707 1.21759 0.98634 0.95523 0.90275 1.21329 1.02272 0.98455 0.92063 1.22487 0.98717 0.94629 0.85108 1.87960 1.86783 1.37991 1.18672 1.23755 0.97259 0.94215 0.85904 0.88421 1.23098 0.99475 1.01580 0.94670 1.23682 0.87693 1.01696 0.90583 1.89184 1.36956 1.64449 1.41698 1.24096 0.92031 0.93701 0.96016 0.91910 0.95425 0.94865 0.92960 0.85024 0.92507 0.95600 0.91365 0.91823 0.92595 0.91833 0.90425 0.86969 0.88181 0.89958 0.89261 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.56 8.94 71.98 0.64 -6.92 16 2 C 0.21 11.01 2.57 44.17 0.11 11.12 16 3 H 0.00 0.16 7.80 -2.39 -0.02 0.14 16 4 C -0.52 -29.33 8.84 25.60 0.23 -29.10 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.43 5.30 84.66 0.45 0.88 16 7 N -0.92 -53.59 11.32 21.45 0.24 -53.35 16 8 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 9 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 12 N -0.69 -29.76 6.23 -495.47 -3.09 -32.85 16 13 C 0.07 2.36 5.48 86.31 0.47 2.83 16 14 C -0.10 -2.98 5.84 30.60 0.18 -2.80 16 15 C 0.07 1.59 5.80 71.98 0.42 2.00 16 16 O -0.39 -9.79 9.98 -148.98 -1.49 -11.28 16 17 C 0.05 0.83 3.58 31.61 0.11 0.95 16 18 H 0.10 1.31 7.86 -2.38 -0.02 1.29 16 19 C -0.15 -2.18 6.90 31.61 0.22 -1.96 16 20 C 0.04 0.58 7.63 72.48 0.55 1.13 16 21 O -0.40 -9.20 11.67 -148.98 -1.74 -10.94 16 22 C 0.02 0.34 7.37 72.49 0.53 0.88 16 23 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 24 H 0.03 1.16 7.45 -2.39 -0.02 1.14 16 25 H 0.03 1.52 8.13 -2.39 -0.02 1.50 16 26 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 27 H 0.33 13.41 8.47 -89.69 -0.76 12.65 16 28 H 0.06 2.06 8.06 -2.39 -0.02 2.04 16 29 H 0.03 0.87 7.44 -2.39 -0.02 0.85 16 30 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.30 8.10 -2.38 -0.02 1.28 16 34 H 0.08 1.34 8.00 -2.39 -0.02 1.32 16 35 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 0.82 8.14 -2.39 -0.02 0.81 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.08 1.77 8.09 -2.39 -0.02 1.75 16 Total: -1.00 -65.09 316.91 0.12 -64.96 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.25 Total: 17.90 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: 3.92 Total: -20.98 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -2.84 Total: -86.20 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -3.23 Total: -22.22 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -65.09 0.12 -64.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308833033.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.011 kcal (2) G-P(sol) polarization free energy of solvation -65.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds