Wall clock time and date at job start Mon Mar 30 2020 03:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46915 * 2 1 4 4 O 1.42898 * 109.46848 * 240.00611 * 2 1 3 5 5 C 1.52994 * 109.47637 * 120.00358 * 2 1 3 6 6 H 1.09006 * 110.90065 * 56.13381 * 5 2 1 7 7 C 1.55142 * 110.99205 * 292.27113 * 5 2 1 8 8 C 1.54319 * 103.01656 * 206.25324 * 7 5 2 9 9 N 1.47439 * 107.23689 * 22.27931 * 8 7 5 10 10 C 1.46903 * 110.99783 * 123.25387 * 9 8 7 11 11 C 1.52996 * 109.46651 * 55.63039 * 10 9 8 12 12 O 1.42900 * 109.47485 * 63.83772 * 11 10 9 13 13 C 1.42902 * 114.00178 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47084 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00091 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99992 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99727 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 119.99978 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47616 * 89.99477 * 18 16 14 20 20 H 1.48503 * 109.46883 * 209.99986 * 18 16 14 21 21 H 1.48506 * 109.47178 * 329.99220 * 18 16 14 22 22 C 1.47850 * 108.56740 * 0.99230 * 9 8 7 23 23 H 1.09001 * 109.47024 * 299.99004 * 1 2 3 24 24 H 1.08992 * 109.47290 * 59.99375 * 1 2 3 25 25 H 1.09001 * 109.46915 * 180.02562 * 1 2 3 26 26 H 0.96693 * 114.00313 * 300.00141 * 4 2 1 27 27 H 1.08997 * 110.70626 * 87.86940 * 7 5 2 28 28 H 1.08998 * 110.85275 * 324.70391 * 7 5 2 29 29 H 1.09002 * 109.88945 * 262.87278 * 8 7 5 30 30 H 1.08995 * 110.02062 * 141.76892 * 8 7 5 31 31 H 1.09000 * 109.47205 * 175.62583 * 10 9 8 32 32 H 1.08998 * 109.47130 * 295.62764 * 10 9 8 33 33 H 1.09003 * 109.47294 * 183.83512 * 11 10 9 34 34 H 1.08999 * 109.47620 * 303.82990 * 11 10 9 35 35 H 1.08997 * 109.47200 * 300.00010 * 13 12 11 36 36 H 1.09002 * 109.46622 * 60.00295 * 13 12 11 37 37 H 0.97004 * 119.99843 * 180.02562 * 17 16 14 38 38 H 1.09003 * 110.37265 * 94.72773 * 22 9 8 39 39 H 1.08988 * 110.37358 * 217.07424 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.0401 -0.7213 1.2491 6 1 1.6348 -1.7315 1.3076 7 6 1.7079 0.0860 2.5316 8 6 2.8061 -0.3624 3.5188 9 7 3.9317 -0.8753 2.7165 10 6 5.1729 -0.1547 3.0298 11 6 5.4476 -0.2417 4.5324 12 8 5.6721 -1.6049 4.8975 13 6 5.9401 -1.7978 6.2878 14 6 6.1593 -3.2640 6.5585 15 1 6.0995 -3.9772 5.7498 16 6 6.4352 -3.6950 7.8388 17 7 6.5075 -2.8264 8.8237 18 14 6.7076 -5.5122 8.1742 19 1 8.1494 -5.8331 8.0220 20 1 6.2729 -5.8307 9.5580 21 1 5.9167 -6.3177 7.2093 22 6 3.5886 -0.7418 1.2846 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5139 -0.8898 25 1 -0.3633 -1.0277 0.0005 26 1 1.7210 -1.5950 -1.2331 27 1 0.7198 -0.1784 2.9083 28 1 1.7731 1.1576 2.3434 29 1 2.4229 -1.1508 4.1667 30 1 3.1352 0.4846 4.1207 31 1 6.0017 -0.6034 2.4823 32 1 5.0692 0.8908 2.7393 33 1 6.3306 0.3495 4.7752 34 1 4.5893 0.1450 5.0818 35 1 6.8334 -1.2390 6.5666 36 1 5.0921 -1.4433 6.8738 37 1 6.7019 -3.1295 9.7244 38 1 3.9898 0.1890 0.8835 39 1 3.9698 -1.5939 0.7220 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339080106.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:08 Heat of formation + Delta-G solvation = -102.954518 kcal Electronic energy + Delta-G solvation = -17848.158624 eV Core-core repulsion = 14983.442782 eV Total energy + Delta-G solvation = -2864.715842 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.58345 -37.40778 -36.22165 -33.13493 -32.45528 -30.34585 -29.04615 -27.74257 -26.42234 -22.99498 -22.66744 -22.19947 -20.75768 -19.82687 -16.94138 -16.40206 -16.25107 -15.74917 -15.55556 -14.97329 -14.45610 -14.22151 -13.85193 -13.47611 -13.33458 -13.07503 -12.73533 -12.59759 -12.10750 -11.86767 -11.64577 -11.49742 -11.27245 -10.98315 -10.86103 -10.78924 -10.72684 -10.62093 -10.35394 -10.07979 -9.90846 -9.03714 -8.74151 -8.08440 -7.99525 -6.05939 -4.06695 3.33968 3.38574 3.44850 4.00613 4.09140 4.39850 4.51824 4.64737 4.67438 4.94613 4.98568 5.02827 5.12907 5.30548 5.34423 5.42891 5.49293 5.54161 5.66589 5.71923 5.73795 5.77590 5.83966 6.04185 6.05731 6.10732 6.16374 6.28744 6.39918 7.15428 7.22212 7.32442 7.41271 7.48884 7.86302 8.22431 8.67536 9.08377 9.58024 11.05820 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.038617 B = 0.004052 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.903981 B = 6909.091969 C = 7093.998575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.112 3.888 3 H 0.095 0.905 4 O -0.563 6.563 5 C -0.130 4.130 6 H 0.087 0.913 7 C -0.134 4.134 8 C 0.041 3.959 9 N -0.515 5.515 10 C 0.056 3.944 11 C 0.062 3.938 12 O -0.379 6.379 13 C 0.194 3.806 14 C -0.510 4.510 15 H 0.067 0.933 16 C 0.055 3.945 17 N -0.901 5.901 18 Si 0.907 3.093 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.271 1.271 22 C 0.055 3.945 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.375 0.625 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.037 0.963 33 H 0.039 0.961 34 H 0.037 0.963 35 H 0.002 0.998 36 H 0.002 0.998 37 H 0.263 0.737 38 H 0.043 0.957 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.071 7.628 -15.555 20.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.053 3.947 3 H 0.113 0.887 4 O -0.369 6.369 5 C -0.150 4.150 6 H 0.105 0.895 7 C -0.173 4.173 8 C -0.087 4.087 9 N -0.239 5.239 10 C -0.072 4.072 11 C -0.016 4.016 12 O -0.299 6.299 13 C 0.119 3.881 14 C -0.548 4.548 15 H 0.085 0.915 16 C -0.146 4.146 17 N -0.541 5.541 18 Si 0.735 3.265 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.196 1.196 22 C -0.073 4.073 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.222 0.778 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.664 7.543 -15.463 20.241 hybrid contribution -0.209 -0.267 0.639 0.724 sum -10.873 7.276 -14.823 19.771 Atomic orbital electron populations 1.22503 0.96404 1.02646 1.02647 1.21889 0.92752 0.96293 0.83745 0.88684 1.86577 1.77337 1.29183 1.43757 1.23066 0.96639 1.00409 0.94849 0.89485 1.22807 0.99850 0.99395 0.95201 1.22880 0.90414 0.99387 0.96036 1.63569 1.02383 1.54560 1.03371 1.22297 0.93147 0.95056 0.96661 1.22369 0.98371 0.87400 0.93427 1.87961 1.91501 1.21638 1.28751 1.20178 0.94335 0.97266 0.76292 1.21076 1.47665 0.92069 0.94001 0.91493 1.24951 0.95421 0.98543 0.95685 1.69971 1.49485 1.34058 1.00547 0.86341 0.78525 0.84264 0.77396 1.20509 1.21154 1.19595 1.22977 0.93668 1.00782 0.89834 0.91416 0.91985 0.92213 0.77768 0.90750 0.91639 0.90102 0.92473 0.90085 0.94507 0.94321 0.94483 0.98035 0.97976 0.92762 0.93894 0.90213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 9.40 37.16 0.35 -0.96 16 2 C 0.11 0.98 3.11 -26.73 -0.08 0.90 16 3 H 0.10 0.86 8.09 -51.93 -0.42 0.44 16 4 O -0.56 -5.35 13.04 -35.23 -0.46 -5.81 16 5 C -0.13 -1.33 2.75 -88.48 -0.24 -1.57 16 6 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 7 C -0.13 -1.40 5.64 -24.91 -0.14 -1.54 16 8 C 0.04 0.57 6.10 -2.84 -0.02 0.56 16 9 N -0.51 -8.14 5.20 -231.26 -1.20 -9.35 16 10 C 0.06 0.90 5.19 -3.82 -0.02 0.88 16 11 C 0.06 1.20 5.82 37.16 0.22 1.42 16 12 O -0.38 -9.54 10.26 -35.23 -0.36 -9.90 16 13 C 0.19 5.48 5.69 36.01 0.20 5.68 16 14 C -0.51 -15.43 9.43 -34.44 -0.32 -15.76 16 15 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 16 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.44 13.29 55.43 0.74 -26.71 16 18 Si 0.91 22.27 29.54 -169.99 -5.02 17.25 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.06 0.70 5.91 -2.30 -0.01 0.69 16 23 H 0.07 0.45 7.56 -51.93 -0.39 0.06 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.38 2.35 9.04 45.56 0.41 2.76 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.62 8.00 -51.93 -0.42 0.20 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.06 0.80 6.05 -51.93 -0.31 0.49 16 31 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.04 0.50 8.00 -51.93 -0.42 0.08 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.04 0.69 6.13 -51.93 -0.32 0.37 16 35 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 36 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.04 0.53 7.61 -51.93 -0.40 0.13 16 39 H 0.08 1.05 8.14 -51.94 -0.42 0.62 16 LS Contribution 315.16 15.07 4.75 4.75 Total: -1.00 -33.11 315.16 -7.76 -40.87 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -6.03 Total: -2.93 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -0.17 Total: -8.18 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: -0.47 Total: -36.05 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.82 Total: -15.71 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.11 -7.76 -40.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339080106.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.084 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds