Wall clock time and date at job start Mon Mar 30 2020 03:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46915 * 2 1 4 4 O 1.42898 * 109.46848 * 240.00611 * 2 1 3 5 5 C 1.52994 * 109.47637 * 120.00358 * 2 1 3 6 6 H 1.09006 * 110.90065 * 56.13381 * 5 2 1 7 7 C 1.55142 * 110.99205 * 292.27113 * 5 2 1 8 8 C 1.54319 * 103.01656 * 206.25324 * 7 5 2 9 9 N 1.47439 * 107.23689 * 22.27931 * 8 7 5 10 10 C 1.46903 * 110.99783 * 123.25387 * 9 8 7 11 11 C 1.52996 * 109.46651 * 55.63039 * 10 9 8 12 12 O 1.42900 * 109.47485 * 63.83772 * 11 10 9 13 13 C 1.42902 * 114.00178 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47084 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00091 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99992 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99727 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 119.99978 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47616 * 89.99477 * 18 16 14 20 20 H 1.48503 * 109.46883 * 209.99986 * 18 16 14 21 21 H 1.48506 * 109.47178 * 329.99220 * 18 16 14 22 22 C 1.47850 * 108.56740 * 0.99230 * 9 8 7 23 23 H 1.09001 * 109.47024 * 299.99004 * 1 2 3 24 24 H 1.08992 * 109.47290 * 59.99375 * 1 2 3 25 25 H 1.09001 * 109.46915 * 180.02562 * 1 2 3 26 26 H 0.96693 * 114.00313 * 300.00141 * 4 2 1 27 27 H 1.08997 * 110.70626 * 87.86940 * 7 5 2 28 28 H 1.08998 * 110.85275 * 324.70391 * 7 5 2 29 29 H 1.09002 * 109.88945 * 262.87278 * 8 7 5 30 30 H 1.08995 * 110.02062 * 141.76892 * 8 7 5 31 31 H 1.09000 * 109.47205 * 175.62583 * 10 9 8 32 32 H 1.08998 * 109.47130 * 295.62764 * 10 9 8 33 33 H 1.09003 * 109.47294 * 183.83512 * 11 10 9 34 34 H 1.08999 * 109.47620 * 303.82990 * 11 10 9 35 35 H 1.08997 * 109.47200 * 300.00010 * 13 12 11 36 36 H 1.09002 * 109.46622 * 60.00295 * 13 12 11 37 37 H 0.97004 * 119.99843 * 180.02562 * 17 16 14 38 38 H 1.09003 * 110.37265 * 94.72773 * 22 9 8 39 39 H 1.08988 * 110.37358 * 217.07424 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.0401 -0.7213 1.2491 6 1 1.6348 -1.7315 1.3076 7 6 1.7079 0.0860 2.5316 8 6 2.8061 -0.3624 3.5188 9 7 3.9317 -0.8753 2.7165 10 6 5.1729 -0.1547 3.0298 11 6 5.4476 -0.2417 4.5324 12 8 5.6721 -1.6049 4.8975 13 6 5.9401 -1.7978 6.2878 14 6 6.1593 -3.2640 6.5585 15 1 6.0995 -3.9772 5.7498 16 6 6.4352 -3.6950 7.8388 17 7 6.5075 -2.8264 8.8237 18 14 6.7076 -5.5122 8.1742 19 1 8.1494 -5.8331 8.0220 20 1 6.2729 -5.8307 9.5580 21 1 5.9167 -6.3177 7.2093 22 6 3.5886 -0.7418 1.2846 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5139 -0.8898 25 1 -0.3633 -1.0277 0.0005 26 1 1.7210 -1.5950 -1.2331 27 1 0.7198 -0.1784 2.9083 28 1 1.7731 1.1576 2.3434 29 1 2.4229 -1.1508 4.1667 30 1 3.1352 0.4846 4.1207 31 1 6.0017 -0.6034 2.4823 32 1 5.0692 0.8908 2.7393 33 1 6.3306 0.3495 4.7752 34 1 4.5893 0.1450 5.0818 35 1 6.8334 -1.2390 6.5666 36 1 5.0921 -1.4433 6.8738 37 1 6.7019 -3.1295 9.7244 38 1 3.9898 0.1890 0.8835 39 1 3.9698 -1.5939 0.7220 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339080106.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:08 Heat of formation + Delta-G solvation = -128.772654 kcal Electronic energy + Delta-G solvation = -17849.278182 eV Core-core repulsion = 14983.442782 eV Total energy + Delta-G solvation = -2865.835400 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.58212 -38.70075 -37.64063 -35.00083 -33.87663 -31.32855 -30.17441 -29.37151 -28.03291 -24.52607 -23.89454 -23.73154 -21.66313 -20.98888 -18.61153 -17.84204 -17.57522 -17.05336 -16.90363 -16.32072 -15.90692 -15.73177 -15.30357 -14.63039 -14.43180 -14.36210 -13.97108 -13.56918 -13.43191 -13.22242 -12.96134 -12.73779 -12.70235 -12.66793 -12.25141 -12.15166 -12.02960 -11.74986 -11.71042 -11.44209 -11.26796 -10.88696 -10.79266 -10.19005 -9.15430 -8.32315 -6.44479 1.39475 1.42688 1.54984 2.35142 2.96393 3.01218 3.21586 3.35407 3.68916 3.79679 3.86470 4.14740 4.19443 4.21957 4.32155 4.38286 4.45186 4.48388 4.59485 4.68599 4.74102 4.80822 4.89296 4.94280 4.97577 4.99952 5.04873 5.17281 5.23911 5.26845 5.40768 5.55145 5.96634 6.10638 6.15364 6.55935 6.84893 6.86910 7.27772 8.80184 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.038617 B = 0.004052 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.903981 B = 6909.091969 C = 7093.998575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.119 3.881 3 H 0.094 0.906 4 O -0.579 6.579 5 C -0.120 4.120 6 H 0.084 0.916 7 C -0.122 4.122 8 C 0.037 3.963 9 N -0.546 5.546 10 C 0.065 3.935 11 C 0.053 3.947 12 O -0.396 6.396 13 C 0.209 3.791 14 C -0.547 4.547 15 H 0.059 0.941 16 C 0.006 3.994 17 N -0.931 5.931 18 Si 0.984 3.016 19 H -0.267 1.267 20 H -0.272 1.272 21 H -0.266 1.266 22 C 0.055 3.945 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.388 0.612 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.042 0.958 35 H -0.016 1.016 36 H -0.017 1.017 37 H 0.271 0.729 38 H 0.050 0.950 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.897 7.386 -16.405 21.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.060 3.940 3 H 0.112 0.888 4 O -0.387 6.387 5 C -0.140 4.140 6 H 0.103 0.897 7 C -0.161 4.161 8 C -0.091 4.091 9 N -0.271 5.271 10 C -0.063 4.063 11 C -0.024 4.024 12 O -0.316 6.316 13 C 0.134 3.866 14 C -0.585 4.585 15 H 0.077 0.923 16 C -0.192 4.192 17 N -0.571 5.571 18 Si 0.807 3.193 19 H -0.192 1.192 20 H -0.197 1.197 21 H -0.190 1.190 22 C -0.072 4.072 23 H 0.092 0.908 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.237 0.763 27 H 0.107 0.893 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.001 0.999 36 H 0.000 1.000 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.499 7.316 -16.333 21.272 hybrid contribution 0.054 -0.131 0.884 0.895 sum -11.445 7.185 -15.448 20.525 Atomic orbital electron populations 1.22452 0.94916 1.03208 1.03132 1.21832 0.93775 0.95819 0.82585 0.88764 1.86547 1.77788 1.30389 1.43939 1.23011 0.94690 1.00603 0.95657 0.89735 1.22748 0.99035 1.00307 0.93992 1.22839 0.91283 0.98347 0.96619 1.63460 1.02755 1.55529 1.05343 1.22198 0.93375 0.96962 0.93744 1.22719 0.98953 0.84681 0.96023 1.87915 1.91546 1.25429 1.26665 1.19796 0.92559 0.96409 0.77817 1.21379 1.49533 0.92887 0.94676 0.92274 1.25970 0.94168 1.04090 0.94976 1.70073 1.49196 1.36605 1.01192 0.85171 0.78993 0.77425 0.77744 1.19200 1.19734 1.18985 1.22985 0.95608 1.00733 0.87847 0.90761 0.91655 0.91658 0.76289 0.89299 0.89963 0.92795 0.92697 0.90664 0.91297 0.93480 0.94023 0.99871 0.99968 0.92026 0.93144 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 9.40 71.98 0.68 -1.39 16 2 C 0.12 1.80 3.11 30.59 0.10 1.90 16 3 H 0.09 1.46 8.09 -2.39 -0.02 1.44 16 4 O -0.58 -9.91 13.04 -148.98 -1.94 -11.85 16 5 C -0.12 -2.24 2.75 -9.41 -0.03 -2.27 16 6 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 7 C -0.12 -2.32 5.64 31.78 0.18 -2.14 16 8 C 0.04 1.03 6.10 86.65 0.53 1.56 16 9 N -0.55 -17.12 5.20 -885.56 -4.60 -21.72 16 10 C 0.07 2.05 5.19 86.30 0.45 2.50 16 11 C 0.05 2.09 5.82 71.98 0.42 2.51 16 12 O -0.40 -20.52 10.26 -148.98 -1.53 -22.05 16 13 C 0.21 12.28 5.69 71.24 0.41 12.69 16 14 C -0.55 -33.86 9.43 25.60 0.24 -33.62 16 15 H 0.06 3.66 7.81 -2.91 -0.02 3.63 16 16 C 0.01 0.37 5.46 84.66 0.46 0.83 16 17 N -0.93 -57.12 13.29 21.45 0.28 -56.84 16 18 Si 0.98 45.45 29.54 68.60 2.03 47.47 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 C 0.06 1.35 5.91 86.77 0.51 1.86 16 23 H 0.07 0.77 7.56 -2.39 -0.02 0.75 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.39 4.19 9.04 -74.06 -0.67 3.52 16 27 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.08 1.31 8.00 -2.39 -0.02 1.29 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.05 1.53 6.05 -2.39 -0.01 1.51 16 31 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.07 1.73 8.00 -2.39 -0.02 1.71 16 33 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.04 1.59 6.13 -2.39 -0.01 1.57 16 35 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 36 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 37 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 38 H 0.05 1.15 7.61 -2.39 -0.02 1.13 16 39 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -71.46 315.16 -1.48 -72.94 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 0.34 Total: 7.62 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: 3.94 Total: -15.58 kcal Atomic # 7 Polarization: -74.24 SS G_CDS: -4.32 Total: -78.56 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -3.47 Total: -33.90 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -71.46 -1.48 -72.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339080106.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.828 kcal (2) G-P(sol) polarization free energy of solvation -71.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds