Wall clock time and date at job start Mon Mar 30 2020 03:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47180 * 2 1 4 4 N 1.46900 * 109.46962 * 119.99628 * 2 1 3 5 5 C 1.46898 * 111.00336 * 274.99905 * 4 2 1 6 6 C 1.52992 * 109.47496 * 179.97438 * 5 4 2 7 7 O 1.42899 * 109.47177 * 65.00139 * 6 5 4 8 8 C 1.42899 * 114.00295 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47340 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99907 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00189 * 180.02562 * 9 8 7 12 12 N 1.31520 * 120.00088 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00194 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47430 * 59.99765 * 13 11 9 15 15 H 1.48498 * 109.47303 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46937 * 300.00033 * 13 11 9 17 17 C 1.52996 * 109.47263 * 239.99773 * 2 1 3 18 18 H 1.09009 * 110.82868 * 300.26693 * 17 2 1 19 19 C 1.54809 * 110.90784 * 176.62461 * 17 2 1 20 20 C 1.54105 * 104.30258 * 220.98523 * 19 17 2 21 21 O 1.43741 * 107.29626 * 357.90370 * 20 19 17 22 22 C 1.44381 * 106.97352 * 26.51231 * 21 20 19 23 23 H 1.09001 * 109.47173 * 303.63390 * 1 2 3 24 24 H 1.08998 * 109.47212 * 63.64035 * 1 2 3 25 25 H 1.09001 * 109.46935 * 183.63917 * 1 2 3 26 26 H 1.00900 * 111.00353 * 151.04656 * 4 2 1 27 27 H 1.08994 * 109.47121 * 300.00656 * 5 4 2 28 28 H 1.09004 * 109.46810 * 60.00330 * 5 4 2 29 29 H 1.09001 * 109.47873 * 185.00180 * 6 5 4 30 30 H 1.09001 * 109.47463 * 305.00316 * 6 5 4 31 31 H 1.08993 * 109.47435 * 300.00190 * 8 7 6 32 32 H 1.09007 * 109.47089 * 60.00020 * 8 7 6 33 33 H 0.97002 * 120.00215 * 179.97438 * 12 11 9 34 34 H 1.09006 * 110.48831 * 102.24574 * 19 17 2 35 35 H 1.08994 * 110.48889 * 339.72853 * 19 17 2 36 36 H 1.09005 * 109.87786 * 117.32867 * 20 19 17 37 37 H 1.09000 * 109.87686 * 238.32473 * 20 19 17 38 38 H 1.08996 * 110.61937 * 78.43977 * 22 21 20 39 39 H 1.09001 * 110.61893 * 201.28564 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5949 -0.5330 3.5745 7 8 3.9432 -0.9495 3.3489 8 6 4.5201 -1.6677 4.4413 9 6 5.9347 -2.0561 4.0959 10 1 6.3516 -1.7814 3.1382 11 6 6.6967 -2.7620 5.0026 12 7 6.1890 -3.0969 6.1687 13 14 8.4504 -3.2427 4.5748 14 1 9.2489 -2.0188 4.3111 15 1 9.0495 -3.9903 5.7094 16 1 8.4466 -4.1018 3.3635 17 6 2.0400 -0.7213 -1.2492 18 1 1.6851 -1.7517 -1.2739 19 6 3.5852 -0.6673 -1.3260 20 6 3.8833 -0.4009 -2.8143 21 8 2.6221 -0.3653 -3.5030 22 6 1.6264 0.0378 -2.5384 23 1 -0.3633 0.5692 0.8556 24 1 -0.3633 0.4563 -0.9208 25 1 -0.3633 -1.0256 0.0652 26 1 2.9172 -1.1205 1.0289 27 1 2.7587 1.0462 2.1182 28 1 1.0870 0.6164 2.5525 29 1 2.5577 0.1211 4.4457 30 1 1.9690 -1.4079 3.7501 31 1 4.5229 -1.0368 5.3300 32 1 3.9342 -2.5662 4.6353 33 1 6.7249 -3.5938 6.8064 34 1 4.0162 -1.6191 -1.0151 35 1 3.9698 0.1444 -0.7087 36 1 4.3930 0.5563 -2.9247 37 1 4.5055 -1.2004 -3.2166 38 1 1.6632 1.1150 -2.3760 39 1 0.6315 -0.2664 -2.8638 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339085503.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:11 Heat of formation + Delta-G solvation = -109.383307 kcal Electronic energy + Delta-G solvation = -17838.754046 eV Core-core repulsion = 14973.759431 eV Total energy + Delta-G solvation = -2864.994615 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.78007 -37.39256 -36.09899 -32.97682 -32.24464 -30.69057 -28.57554 -27.75592 -26.57477 -23.40393 -22.35219 -22.06404 -21.20350 -20.11128 -16.79495 -16.59286 -16.26893 -15.72557 -15.51205 -15.08242 -14.76577 -14.36439 -13.88386 -13.72422 -13.44577 -13.09054 -12.86615 -12.38838 -12.17629 -11.85681 -11.71901 -11.41499 -11.19821 -11.06799 -10.94556 -10.84321 -10.72495 -10.61371 -10.41023 -10.02108 -9.81943 -9.13870 -8.83978 -8.25658 -8.18765 -6.12313 -4.14438 3.30392 3.33506 3.36825 3.78238 4.14479 4.33006 4.44921 4.65033 4.84534 4.92099 4.99310 5.11254 5.21891 5.24073 5.27746 5.38973 5.49526 5.59161 5.64648 5.67214 5.68289 5.72929 5.89609 5.95355 6.04198 6.07692 6.17455 6.26920 6.34681 6.70864 7.09681 7.21807 7.42311 7.63164 7.76646 8.13559 8.55704 8.98030 9.50433 10.99143 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.024247 B = 0.004838 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.499016 B = 5786.372597 C = 6794.141676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.093 3.907 3 H 0.042 0.958 4 N -0.683 5.683 5 C 0.066 3.934 6 C 0.062 3.938 7 O -0.400 6.400 8 C 0.198 3.802 9 C -0.516 4.516 10 H 0.065 0.935 11 C 0.057 3.943 12 N -0.898 5.898 13 Si 0.908 3.092 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.275 1.275 17 C -0.122 4.122 18 H 0.094 0.906 19 C -0.159 4.159 20 C 0.049 3.951 21 O -0.381 6.381 22 C 0.055 3.945 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.357 0.643 27 H 0.033 0.967 28 H 0.075 0.925 29 H 0.040 0.960 30 H 0.046 0.954 31 H 0.004 0.996 32 H 0.006 0.994 33 H 0.265 0.735 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.059 0.941 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.724 6.925 -13.747 18.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.017 4.017 3 H 0.060 0.940 4 N -0.317 5.317 5 C -0.063 4.063 6 C -0.016 4.016 7 O -0.320 6.320 8 C 0.123 3.877 9 C -0.554 4.554 10 H 0.083 0.917 11 C -0.144 4.144 12 N -0.537 5.537 13 Si 0.735 3.265 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.200 1.200 17 C -0.141 4.141 18 H 0.113 0.887 19 C -0.197 4.197 20 C -0.028 4.028 21 O -0.300 6.300 22 C -0.022 4.022 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.177 0.823 27 H 0.051 0.949 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.022 0.978 32 H 0.024 0.976 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.209 6.568 -13.783 18.366 hybrid contribution 1.617 0.241 0.337 1.670 sum -8.591 6.810 -13.446 17.349 Atomic orbital electron populations 1.21837 0.94604 1.02583 1.00909 1.21456 0.95810 0.95493 0.88955 0.93958 1.60535 1.35063 1.32541 1.03567 1.21993 0.99453 0.93928 0.90938 1.22295 0.86334 0.97641 0.95356 1.87775 1.24467 1.75576 1.44165 1.20169 0.93240 0.90030 0.84229 1.21000 0.96683 1.35254 1.02461 0.91724 1.24942 0.99042 0.95687 0.94754 1.69954 1.37384 1.39282 1.07094 0.86405 0.83530 0.78669 0.77915 1.20065 1.21124 1.20007 1.22954 0.95064 1.01420 0.94659 0.88740 1.23053 0.95912 1.03932 0.96761 1.23143 0.86731 1.01356 0.91586 1.88850 1.17320 1.89595 1.34261 1.23618 0.92866 0.98200 0.87561 0.92742 0.92811 0.91734 0.82279 0.94879 0.90711 0.94178 0.93536 0.97844 0.97621 0.92577 0.89620 0.90503 0.92524 0.89774 0.92298 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.27 37.16 0.34 -1.06 16 2 C 0.09 1.06 2.06 -67.72 -0.14 0.92 16 3 H 0.04 0.49 7.80 -51.93 -0.40 0.08 16 4 N -0.68 -9.86 6.31 -106.73 -0.67 -10.54 16 5 C 0.07 0.98 5.90 -3.83 -0.02 0.96 16 6 C 0.06 1.14 6.28 37.15 0.23 1.38 16 7 O -0.40 -9.43 9.85 -35.23 -0.35 -9.78 16 8 C 0.20 5.40 5.69 36.01 0.20 5.61 16 9 C -0.52 -15.07 9.43 -34.44 -0.32 -15.40 16 10 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 13 Si 0.91 21.72 29.54 -169.99 -5.02 16.70 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 C -0.12 -1.33 2.79 -88.49 -0.25 -1.58 16 18 H 0.09 1.09 8.14 -51.92 -0.42 0.67 16 19 C -0.16 -1.81 5.48 -25.20 -0.14 -1.95 16 20 C 0.05 0.53 7.70 37.73 0.29 0.82 16 21 O -0.38 -4.68 11.52 -35.23 -0.41 -5.08 16 22 C 0.05 0.55 6.24 38.34 0.24 0.79 16 23 H 0.05 0.54 7.55 -51.93 -0.39 0.15 16 24 H 0.05 0.43 7.21 -51.93 -0.37 0.06 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.36 5.75 6.93 -39.29 -0.27 5.48 16 27 H 0.03 0.50 8.05 -51.93 -0.42 0.08 16 28 H 0.07 0.95 7.50 -51.93 -0.39 0.56 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 32 H 0.01 0.17 8.14 -51.92 -0.42 -0.25 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 0.91 7.86 -51.93 -0.41 0.50 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.55 8.05 -51.93 -0.42 0.13 16 39 H 0.09 0.80 7.99 -51.93 -0.41 0.38 16 LS Contribution 316.45 15.07 4.77 4.77 Total: -1.00 -30.76 316.45 -7.44 -38.20 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -6.84 Total: -0.19 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 0.34 Total: -7.96 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.06 Total: -36.65 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.75 Total: -14.86 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.76 -7.44 -38.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339085503.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.179 kcal (2) G-P(sol) polarization free energy of solvation -30.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds