Wall clock time and date at job start Mon Mar 30 2020 03:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47180 * 2 1 4 4 N 1.46900 * 109.46962 * 119.99628 * 2 1 3 5 5 C 1.46898 * 111.00336 * 274.99905 * 4 2 1 6 6 C 1.52992 * 109.47496 * 179.97438 * 5 4 2 7 7 O 1.42899 * 109.47177 * 65.00139 * 6 5 4 8 8 C 1.42899 * 114.00295 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47340 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99907 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00189 * 180.02562 * 9 8 7 12 12 N 1.31520 * 120.00088 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00194 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47430 * 59.99765 * 13 11 9 15 15 H 1.48498 * 109.47303 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46937 * 300.00033 * 13 11 9 17 17 C 1.52996 * 109.47263 * 239.99773 * 2 1 3 18 18 H 1.09009 * 110.82868 * 300.26693 * 17 2 1 19 19 C 1.54809 * 110.90784 * 176.62461 * 17 2 1 20 20 C 1.54105 * 104.30258 * 220.98523 * 19 17 2 21 21 O 1.43741 * 107.29626 * 357.90370 * 20 19 17 22 22 C 1.44381 * 106.97352 * 26.51231 * 21 20 19 23 23 H 1.09001 * 109.47173 * 303.63390 * 1 2 3 24 24 H 1.08998 * 109.47212 * 63.64035 * 1 2 3 25 25 H 1.09001 * 109.46935 * 183.63917 * 1 2 3 26 26 H 1.00900 * 111.00353 * 151.04656 * 4 2 1 27 27 H 1.08994 * 109.47121 * 300.00656 * 5 4 2 28 28 H 1.09004 * 109.46810 * 60.00330 * 5 4 2 29 29 H 1.09001 * 109.47873 * 185.00180 * 6 5 4 30 30 H 1.09001 * 109.47463 * 305.00316 * 6 5 4 31 31 H 1.08993 * 109.47435 * 300.00190 * 8 7 6 32 32 H 1.09007 * 109.47089 * 60.00020 * 8 7 6 33 33 H 0.97002 * 120.00215 * 179.97438 * 12 11 9 34 34 H 1.09006 * 110.48831 * 102.24574 * 19 17 2 35 35 H 1.08994 * 110.48889 * 339.72853 * 19 17 2 36 36 H 1.09005 * 109.87786 * 117.32867 * 20 19 17 37 37 H 1.09000 * 109.87686 * 238.32473 * 20 19 17 38 38 H 1.08996 * 110.61937 * 78.43977 * 22 21 20 39 39 H 1.09001 * 110.61893 * 201.28564 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5949 -0.5330 3.5745 7 8 3.9432 -0.9495 3.3489 8 6 4.5201 -1.6677 4.4413 9 6 5.9347 -2.0561 4.0959 10 1 6.3516 -1.7814 3.1382 11 6 6.6967 -2.7620 5.0026 12 7 6.1890 -3.0969 6.1687 13 14 8.4504 -3.2427 4.5748 14 1 9.2489 -2.0188 4.3111 15 1 9.0495 -3.9903 5.7094 16 1 8.4466 -4.1018 3.3635 17 6 2.0400 -0.7213 -1.2492 18 1 1.6851 -1.7517 -1.2739 19 6 3.5852 -0.6673 -1.3260 20 6 3.8833 -0.4009 -2.8143 21 8 2.6221 -0.3653 -3.5030 22 6 1.6264 0.0378 -2.5384 23 1 -0.3633 0.5692 0.8556 24 1 -0.3633 0.4563 -0.9208 25 1 -0.3633 -1.0256 0.0652 26 1 2.9172 -1.1205 1.0289 27 1 2.7587 1.0462 2.1182 28 1 1.0870 0.6164 2.5525 29 1 2.5577 0.1211 4.4457 30 1 1.9690 -1.4079 3.7501 31 1 4.5229 -1.0368 5.3300 32 1 3.9342 -2.5662 4.6353 33 1 6.7249 -3.5938 6.8064 34 1 4.0162 -1.6191 -1.0151 35 1 3.9698 0.1444 -0.7087 36 1 4.3930 0.5563 -2.9247 37 1 4.5055 -1.2004 -3.2166 38 1 1.6632 1.1150 -2.3760 39 1 0.6315 -0.2664 -2.8638 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339085503.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:10 Heat of formation + Delta-G solvation = -131.211307 kcal Electronic energy + Delta-G solvation = -17839.700579 eV Core-core repulsion = 14973.759431 eV Total energy + Delta-G solvation = -2865.941148 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.67246 -38.90974 -37.43988 -34.98488 -33.56099 -31.62487 -29.98686 -28.96953 -28.20575 -24.61731 -24.28196 -22.97624 -22.47520 -21.02666 -18.65337 -17.79726 -17.45657 -17.21388 -16.83556 -16.49420 -16.16235 -15.77424 -15.24276 -15.15512 -14.47508 -14.36730 -13.92053 -13.69031 -13.37496 -13.27333 -13.02290 -12.80246 -12.70462 -12.50498 -12.39713 -12.14760 -12.02530 -11.81490 -11.62997 -11.42136 -11.28410 -10.87291 -10.67408 -10.24158 -9.37476 -8.32443 -6.45104 1.39716 1.44186 1.52615 2.33946 2.94800 3.01586 3.10445 3.20702 3.56809 3.74698 3.97651 4.11828 4.18625 4.26791 4.30683 4.40879 4.43932 4.54937 4.60560 4.76409 4.77872 4.80348 4.82360 4.83943 4.92432 4.99480 5.05017 5.09195 5.17090 5.20753 5.43765 5.53739 5.87110 5.94929 6.14136 6.40116 6.52246 6.80395 7.26854 8.79737 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.024247 B = 0.004838 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.499016 B = 5786.372597 C = 6794.141676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.095 3.905 3 H 0.047 0.953 4 N -0.693 5.693 5 C 0.076 3.924 6 C 0.053 3.947 7 O -0.408 6.408 8 C 0.211 3.789 9 C -0.548 4.548 10 H 0.063 0.937 11 C 0.007 3.993 12 N -0.931 5.931 13 Si 0.982 3.018 14 H -0.265 1.265 15 H -0.276 1.276 16 H -0.265 1.265 17 C -0.118 4.118 18 H 0.086 0.914 19 C -0.159 4.159 20 C 0.049 3.951 21 O -0.400 6.400 22 C 0.057 3.943 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.056 0.944 26 H 0.344 0.656 27 H 0.032 0.968 28 H 0.104 0.896 29 H 0.048 0.952 30 H 0.042 0.958 31 H -0.015 1.015 32 H -0.016 1.016 33 H 0.271 0.729 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.667 7.536 -14.912 19.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.015 4.015 3 H 0.065 0.935 4 N -0.326 5.326 5 C -0.053 4.053 6 C -0.024 4.024 7 O -0.328 6.328 8 C 0.136 3.864 9 C -0.585 4.585 10 H 0.081 0.919 11 C -0.192 4.192 12 N -0.570 5.570 13 Si 0.805 3.195 14 H -0.190 1.190 15 H -0.201 1.201 16 H -0.190 1.190 17 C -0.137 4.137 18 H 0.104 0.896 19 C -0.197 4.197 20 C -0.028 4.028 21 O -0.319 6.319 22 C -0.020 4.020 23 H 0.075 0.925 24 H 0.095 0.905 25 H 0.075 0.925 26 H 0.163 0.837 27 H 0.051 0.949 28 H 0.122 0.878 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.002 0.998 32 H 0.002 0.998 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.186 7.199 -14.960 19.477 hybrid contribution 1.506 0.077 0.710 1.667 sum -8.680 7.276 -14.250 18.202 Atomic orbital electron populations 1.21823 0.93078 1.02413 1.02243 1.21532 0.96852 0.95302 0.87788 0.93529 1.60603 1.34249 1.33017 1.04748 1.21941 1.00638 0.93186 0.89517 1.22610 0.83817 0.98015 0.97927 1.87742 1.27143 1.75117 1.42770 1.19787 0.92924 0.89066 0.84584 1.21348 0.97841 1.36471 1.02873 0.91878 1.25955 1.03894 0.94990 0.94320 1.70068 1.39368 1.39499 1.08097 0.85247 0.77385 0.78730 0.78135 1.18981 1.20070 1.18990 1.22893 0.94552 1.01140 0.95103 0.89567 1.23022 0.96439 1.03031 0.97222 1.23193 0.86588 1.02135 0.90882 1.88830 1.18050 1.89849 1.35192 1.23732 0.93147 0.98679 0.86447 0.92520 0.90546 0.92499 0.83748 0.94930 0.87829 0.93404 0.93952 0.99765 0.99839 0.92052 0.90774 0.91168 0.91575 0.89221 0.91160 0.87229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.27 71.98 0.67 -1.73 16 2 C 0.09 2.01 2.06 44.91 0.09 2.10 16 3 H 0.05 0.97 7.80 -2.39 -0.02 0.96 16 4 N -0.69 -19.51 6.31 -491.60 -3.10 -22.61 16 5 C 0.08 2.18 5.90 86.30 0.51 2.69 16 6 C 0.05 1.99 6.28 71.98 0.45 2.44 16 7 O -0.41 -19.62 9.85 -148.98 -1.47 -21.09 16 8 C 0.21 11.93 5.69 71.24 0.41 12.34 16 9 C -0.55 -32.50 9.43 25.60 0.24 -32.26 16 10 H 0.06 3.67 7.81 -2.91 -0.02 3.64 16 11 C 0.01 0.40 5.46 84.65 0.46 0.86 16 12 N -0.93 -56.15 13.29 21.45 0.28 -55.87 16 13 Si 0.98 44.16 29.54 68.60 2.03 46.18 16 14 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 15 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 16 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 17 C -0.12 -2.43 2.79 -9.41 -0.03 -2.46 16 18 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 19 C -0.16 -3.57 5.48 31.59 0.17 -3.39 16 20 C 0.05 1.00 7.70 72.36 0.56 1.56 16 21 O -0.40 -9.19 11.52 -148.98 -1.72 -10.91 16 22 C 0.06 1.02 6.24 72.75 0.45 1.47 16 23 H 0.06 0.97 7.55 -2.39 -0.02 0.95 16 24 H 0.08 0.99 7.21 -2.39 -0.02 0.97 16 25 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.34 11.15 6.93 -89.69 -0.62 10.53 16 27 H 0.03 0.94 8.05 -2.39 -0.02 0.92 16 28 H 0.10 2.39 7.50 -2.39 -0.02 2.37 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 31 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 32 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 33 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 34 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.07 1.65 7.86 -2.39 -0.02 1.63 16 36 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.07 1.11 8.05 -2.39 -0.02 1.09 16 39 H 0.11 1.58 7.99 -2.39 -0.02 1.56 16 Total: -1.00 -65.70 316.45 0.40 -65.30 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.38 Total: 15.38 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 3.99 Total: -16.39 kcal Atomic # 7 Polarization: -75.66 SS G_CDS: -2.82 Total: -78.48 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -3.18 Total: -32.00 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -65.70 0.40 -65.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339085503.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.913 kcal (2) G-P(sol) polarization free energy of solvation -65.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds