Wall clock time and date at job start Mon Mar 30 2020 04:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 111.00244 * 2 1 4 4 C 1.53005 * 109.47109 * 287.45494 * 3 2 1 5 5 O 1.42905 * 109.46814 * 66.77981 * 4 3 2 6 6 C 1.42902 * 113.99949 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47265 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99835 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99964 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99538 * 179.97438 * 9 7 6 11 11 Si 1.86794 * 119.99884 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47338 * 90.00315 * 11 9 7 13 13 H 1.48508 * 109.46759 * 210.00325 * 11 9 7 14 14 H 1.48496 * 109.47455 * 329.99955 * 11 9 7 15 15 C 1.46901 * 111.00229 * 123.95637 * 2 1 3 16 16 H 1.09000 * 109.51810 * 296.04206 * 15 2 1 17 17 C 1.53175 * 109.52100 * 56.16932 * 15 2 1 18 18 C 1.53186 * 109.03190 * 176.82700 * 17 15 2 19 19 C 1.53090 * 109.21316 * 303.11346 * 18 17 15 20 20 O 1.42907 * 109.41481 * 57.57229 * 19 18 17 21 21 C 1.42897 * 114.10073 * 298.84637 * 20 19 18 22 22 H 1.08999 * 109.47068 * 66.13204 * 1 2 3 23 23 H 1.08995 * 109.47510 * 186.13466 * 1 2 3 24 24 H 1.09004 * 109.47168 * 306.13745 * 1 2 3 25 25 H 1.09002 * 109.47583 * 167.45624 * 3 2 1 26 26 H 1.09000 * 109.46865 * 47.45474 * 3 2 1 27 27 H 1.09000 * 109.47320 * 306.77798 * 4 3 2 28 28 H 1.09001 * 109.47049 * 186.77602 * 4 3 2 29 29 H 1.09002 * 109.47070 * 299.99969 * 6 5 4 30 30 H 1.09002 * 109.46812 * 59.99725 * 6 5 4 31 31 H 0.97006 * 119.99305 * 179.97438 * 10 9 7 32 32 H 1.09008 * 109.54445 * 296.75348 * 17 15 2 33 33 H 1.08994 * 109.54563 * 57.01922 * 17 15 2 34 34 H 1.09001 * 109.52687 * 183.17606 * 18 17 15 35 35 H 1.09004 * 109.51760 * 63.04794 * 18 17 15 36 36 H 1.09004 * 109.48094 * 297.59482 * 19 18 17 37 37 H 1.09002 * 109.49115 * 177.56251 * 19 18 17 38 38 H 1.09005 * 109.47832 * 301.17508 * 21 20 19 39 39 H 1.08998 * 109.49289 * 181.14566 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7743 2.0026 -1.3761 5 8 0.3737 2.1739 -1.6020 6 6 0.0561 2.7590 -2.8665 7 6 -1.4392 2.8927 -2.9968 8 1 -2.0828 2.5634 -2.1944 9 6 -1.9858 3.4344 -4.1409 10 7 -3.2908 3.5506 -4.2548 11 14 -0.8727 4.0033 -5.5289 12 1 -0.6412 2.8785 -6.4705 13 1 -1.5182 5.1288 -6.2513 14 1 0.4262 4.4549 -4.9684 15 6 1.9955 -0.7660 1.1375 16 1 1.7049 -0.2806 2.0692 17 6 1.4285 -2.1886 1.1030 18 6 2.0454 -3.0001 2.2465 19 6 3.5704 -2.9776 2.1146 20 8 4.0281 -1.6239 2.1236 21 6 3.5224 -0.8298 1.0485 22 1 -0.3633 0.4158 -0.9398 23 1 -0.3634 -1.0217 0.1098 24 1 -0.3634 0.6061 0.8300 25 1 3.0622 1.3512 0.2232 26 1 1.4770 1.9596 0.7571 27 1 2.1895 1.3516 -2.1455 28 1 2.2699 2.9727 -1.4148 29 1 0.5161 3.7447 -2.9366 30 1 0.4356 2.1232 -3.6665 31 1 -3.6753 3.9321 -5.0595 32 1 0.3457 -2.1526 1.2229 33 1 1.6758 -2.6566 0.1502 34 1 1.6905 -4.0294 2.1955 35 1 1.7558 -2.5617 3.2016 36 1 3.8614 -3.4535 1.1781 37 1 4.0157 -3.5175 2.9504 38 1 3.8127 -1.2776 0.0981 39 1 3.9329 0.1776 1.1161 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339190679.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:56 Heat of formation + Delta-G solvation = -88.442339 kcal Electronic energy + Delta-G solvation = -18176.476673 eV Core-core repulsion = 15312.390127 eV Total energy + Delta-G solvation = -2864.086546 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.80983 -37.61638 -36.07805 -33.25039 -32.59548 -30.52132 -29.28770 -27.69443 -25.73100 -24.19380 -22.96756 -21.82193 -20.92933 -19.98078 -16.90392 -16.85655 -16.38646 -15.63483 -15.56186 -14.95632 -14.76579 -14.61356 -14.13588 -13.67039 -13.49884 -13.19265 -12.84838 -12.64887 -12.24375 -11.95202 -11.55278 -11.51976 -11.34210 -11.17149 -10.97266 -10.89742 -10.68509 -10.40172 -10.25447 -9.86186 -9.58043 -9.17479 -8.81500 -8.44936 -8.12300 -6.12345 -4.11265 3.24859 3.31838 3.33439 3.59682 4.10879 4.35351 4.60055 4.67242 4.72472 4.75165 4.89592 5.10048 5.19627 5.20469 5.33019 5.42082 5.58071 5.60264 5.60817 5.73985 5.80915 5.86371 5.88910 5.93442 5.98618 6.10199 6.15856 6.26697 6.61399 6.81121 6.96452 7.02138 7.24604 7.35327 7.60392 8.01695 8.66063 8.98286 9.47360 11.00650 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.049165 B = 0.004359 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.378152 B = 6421.308432 C = 6723.992675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.529 5.529 3 C 0.054 3.946 4 C 0.063 3.937 5 O -0.377 6.377 6 C 0.168 3.832 7 C -0.518 4.518 8 H 0.081 0.919 9 C 0.072 3.928 10 N -0.896 5.896 11 Si 0.876 3.124 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.267 1.267 15 C 0.048 3.952 16 H 0.045 0.955 17 C -0.118 4.118 18 C -0.154 4.154 19 C 0.059 3.941 20 O -0.384 6.384 21 C 0.066 3.934 22 H 0.107 0.893 23 H 0.058 0.942 24 H 0.021 0.979 25 H 0.080 0.920 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.042 0.958 29 H 0.001 0.999 30 H -0.001 1.001 31 H 0.266 0.734 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.640 -11.051 10.882 20.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.255 5.255 3 C -0.074 4.074 4 C -0.015 4.015 5 O -0.297 6.297 6 C 0.093 3.907 7 C -0.556 4.556 8 H 0.100 0.900 9 C -0.130 4.130 10 N -0.534 5.534 11 Si 0.703 3.297 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.191 1.191 15 C -0.061 4.061 16 H 0.063 0.937 17 C -0.156 4.156 18 C -0.193 4.193 19 C -0.018 4.018 20 O -0.302 6.302 21 C -0.011 4.011 22 H 0.126 0.874 23 H 0.077 0.923 24 H 0.040 0.960 25 H 0.098 0.902 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.019 0.981 30 H 0.017 0.983 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.631 -11.193 10.603 20.580 hybrid contribution 0.116 0.750 -0.474 0.895 sum 13.747 -10.443 10.129 20.016 Atomic orbital electron populations 1.22714 0.85494 1.00528 1.04153 1.62055 1.09615 1.13119 1.40724 1.22269 0.99366 0.88557 0.97206 1.22342 0.85637 0.97697 0.95843 1.87902 1.20046 1.82721 1.38983 1.20586 0.97439 0.91456 0.81260 1.20887 0.89193 1.41412 1.04112 0.90044 1.24768 0.95003 0.95250 0.97942 1.69880 1.10118 1.45148 1.28298 0.86845 0.81250 0.78974 0.82644 1.19924 1.20845 1.19126 1.22238 0.95652 0.94947 0.93249 0.93711 1.21726 1.00697 0.94253 0.98898 1.22209 0.96415 1.00958 0.99678 1.22589 0.93792 0.83655 1.01742 1.87930 1.70235 1.22022 1.50031 1.22684 0.92500 0.95789 0.90157 0.87426 0.92312 0.95988 0.90184 0.93869 0.93416 0.94035 0.98115 0.98343 0.92389 0.90933 0.90806 0.90714 0.91228 0.93079 0.89081 0.92108 0.88843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 8.81 60.06 0.53 0.83 16 2 N -0.53 -7.83 4.58 -234.72 -1.08 -8.91 16 3 C 0.05 0.79 5.39 -3.82 -0.02 0.77 16 4 C 0.06 1.09 6.23 37.16 0.23 1.33 16 5 O -0.38 -8.50 7.41 -35.23 -0.26 -8.76 16 6 C 0.17 4.22 4.76 36.00 0.17 4.39 16 7 C -0.52 -15.23 9.99 -34.44 -0.34 -15.58 16 8 H 0.08 2.61 8.06 -52.48 -0.42 2.18 16 9 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 10 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 11 Si 0.88 21.40 27.47 -169.99 -4.67 16.74 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 15 C 0.05 0.60 2.14 -67.58 -0.14 0.45 16 16 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 17 C -0.12 -1.29 4.88 -26.54 -0.13 -1.42 16 18 C -0.15 -1.38 6.13 -26.59 -0.16 -1.54 16 19 C 0.06 0.54 6.84 37.20 0.25 0.79 16 20 O -0.38 -4.51 10.77 -35.23 -0.38 -4.89 16 21 C 0.07 0.75 5.88 37.20 0.22 0.97 16 22 H 0.11 2.16 5.75 -51.93 -0.30 1.86 16 23 H 0.06 0.85 5.78 -51.93 -0.30 0.55 16 24 H 0.02 0.36 7.98 -51.93 -0.41 -0.05 16 25 H 0.08 0.95 5.67 -51.93 -0.29 0.66 16 26 H 0.04 0.67 7.93 -51.93 -0.41 0.25 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.00 0.03 7.20 -51.93 -0.37 -0.35 16 30 H 0.00 -0.03 7.57 -51.93 -0.39 -0.42 16 31 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.07 0.81 6.33 -51.92 -0.33 0.48 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 1.00 6.22 -51.93 -0.32 0.68 16 LS Contribution 301.55 15.07 4.54 4.54 Total: -1.00 -31.16 301.55 -7.09 -38.25 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -6.53 Total: -3.20 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 0.51 Total: -7.01 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: -0.30 Total: -35.68 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.64 Total: -13.64 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.16 -7.09 -38.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339190679.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.188 kcal (2) G-P(sol) polarization free energy of solvation -31.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds