Wall clock time and date at job start Mon Mar 30 2020 04:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 111.00244 * 2 1 4 4 C 1.53005 * 109.47109 * 287.45494 * 3 2 1 5 5 O 1.42905 * 109.46814 * 66.77981 * 4 3 2 6 6 C 1.42902 * 113.99949 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47265 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99835 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99964 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99538 * 179.97438 * 9 7 6 11 11 Si 1.86794 * 119.99884 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47338 * 90.00315 * 11 9 7 13 13 H 1.48508 * 109.46759 * 210.00325 * 11 9 7 14 14 H 1.48496 * 109.47455 * 329.99955 * 11 9 7 15 15 C 1.46901 * 111.00229 * 123.95637 * 2 1 3 16 16 H 1.09000 * 109.51810 * 296.04206 * 15 2 1 17 17 C 1.53175 * 109.52100 * 56.16932 * 15 2 1 18 18 C 1.53186 * 109.03190 * 176.82700 * 17 15 2 19 19 C 1.53090 * 109.21316 * 303.11346 * 18 17 15 20 20 O 1.42907 * 109.41481 * 57.57229 * 19 18 17 21 21 C 1.42897 * 114.10073 * 298.84637 * 20 19 18 22 22 H 1.08999 * 109.47068 * 66.13204 * 1 2 3 23 23 H 1.08995 * 109.47510 * 186.13466 * 1 2 3 24 24 H 1.09004 * 109.47168 * 306.13745 * 1 2 3 25 25 H 1.09002 * 109.47583 * 167.45624 * 3 2 1 26 26 H 1.09000 * 109.46865 * 47.45474 * 3 2 1 27 27 H 1.09000 * 109.47320 * 306.77798 * 4 3 2 28 28 H 1.09001 * 109.47049 * 186.77602 * 4 3 2 29 29 H 1.09002 * 109.47070 * 299.99969 * 6 5 4 30 30 H 1.09002 * 109.46812 * 59.99725 * 6 5 4 31 31 H 0.97006 * 119.99305 * 179.97438 * 10 9 7 32 32 H 1.09008 * 109.54445 * 296.75348 * 17 15 2 33 33 H 1.08994 * 109.54563 * 57.01922 * 17 15 2 34 34 H 1.09001 * 109.52687 * 183.17606 * 18 17 15 35 35 H 1.09004 * 109.51760 * 63.04794 * 18 17 15 36 36 H 1.09004 * 109.48094 * 297.59482 * 19 18 17 37 37 H 1.09002 * 109.49115 * 177.56251 * 19 18 17 38 38 H 1.09005 * 109.47832 * 301.17508 * 21 20 19 39 39 H 1.08998 * 109.49289 * 181.14566 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7743 2.0026 -1.3761 5 8 0.3737 2.1739 -1.6020 6 6 0.0561 2.7590 -2.8665 7 6 -1.4392 2.8927 -2.9968 8 1 -2.0828 2.5634 -2.1944 9 6 -1.9858 3.4344 -4.1409 10 7 -3.2908 3.5506 -4.2548 11 14 -0.8727 4.0033 -5.5289 12 1 -0.6412 2.8785 -6.4705 13 1 -1.5182 5.1288 -6.2513 14 1 0.4262 4.4549 -4.9684 15 6 1.9955 -0.7660 1.1375 16 1 1.7049 -0.2806 2.0692 17 6 1.4285 -2.1886 1.1030 18 6 2.0454 -3.0001 2.2465 19 6 3.5704 -2.9776 2.1146 20 8 4.0281 -1.6239 2.1236 21 6 3.5224 -0.8298 1.0485 22 1 -0.3633 0.4158 -0.9398 23 1 -0.3634 -1.0217 0.1098 24 1 -0.3634 0.6061 0.8300 25 1 3.0622 1.3512 0.2232 26 1 1.4770 1.9596 0.7571 27 1 2.1895 1.3516 -2.1455 28 1 2.2699 2.9727 -1.4148 29 1 0.5161 3.7447 -2.9366 30 1 0.4356 2.1232 -3.6665 31 1 -3.6753 3.9321 -5.0595 32 1 0.3457 -2.1526 1.2229 33 1 1.6758 -2.6566 0.1502 34 1 1.6905 -4.0294 2.1955 35 1 1.7558 -2.5617 3.2016 36 1 3.8614 -3.4535 1.1781 37 1 4.0157 -3.5175 2.9504 38 1 3.8127 -1.2776 0.0981 39 1 3.9329 0.1776 1.1161 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339190679.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:56 Heat of formation + Delta-G solvation = -111.114260 kcal Electronic energy + Delta-G solvation = -18177.459801 eV Core-core repulsion = 15312.390127 eV Total energy + Delta-G solvation = -2865.069675 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.75231 -39.00585 -37.44901 -34.88587 -34.04872 -31.66999 -30.62716 -29.55376 -26.82863 -25.22097 -24.08047 -23.82789 -22.07113 -20.93310 -19.03839 -17.95426 -17.45865 -17.10230 -16.81439 -16.46221 -15.84015 -15.79659 -15.57678 -14.98773 -14.71362 -14.62510 -14.18127 -13.84637 -13.71081 -13.40341 -13.06696 -12.88811 -12.61867 -12.42328 -12.36340 -12.02879 -11.96654 -11.82808 -11.62892 -11.31679 -11.17404 -10.90163 -10.44046 -10.25555 -9.34247 -8.36780 -6.44074 1.33760 1.36369 1.47191 2.29757 2.66916 2.96300 3.05640 3.18935 3.70661 3.83397 3.95137 4.05316 4.11855 4.27220 4.34097 4.42555 4.53190 4.55838 4.57790 4.65607 4.68491 4.71054 4.80996 4.83838 4.92150 4.99340 5.03125 5.03770 5.10813 5.30004 5.37296 5.50054 5.93960 6.00617 6.03702 6.32055 6.59912 6.76985 7.20590 8.80245 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.049165 B = 0.004359 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.378152 B = 6421.308432 C = 6723.992675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.534 5.534 3 C 0.057 3.943 4 C 0.054 3.946 5 O -0.397 6.397 6 C 0.179 3.821 7 C -0.541 4.541 8 H 0.031 0.969 9 C 0.013 3.987 10 N -0.943 5.943 11 Si 0.954 3.046 12 H -0.260 1.260 13 H -0.274 1.274 14 H -0.246 1.246 15 C 0.049 3.951 16 H 0.036 0.964 17 C -0.119 4.119 18 C -0.148 4.148 19 C 0.053 3.947 20 O -0.398 6.398 21 C 0.070 3.930 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.012 0.988 25 H 0.115 0.885 26 H 0.033 0.967 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.010 0.990 30 H 0.008 0.992 31 H 0.272 0.728 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.111 0.889 38 H 0.063 0.937 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.329 -11.593 10.540 22.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.259 5.259 3 C -0.070 4.070 4 C -0.023 4.023 5 O -0.317 6.317 6 C 0.103 3.897 7 C -0.579 4.579 8 H 0.049 0.951 9 C -0.185 4.185 10 N -0.583 5.583 11 Si 0.776 3.224 12 H -0.185 1.185 13 H -0.200 1.200 14 H -0.169 1.169 15 C -0.059 4.059 16 H 0.054 0.946 17 C -0.156 4.156 18 C -0.186 4.186 19 C -0.023 4.023 20 O -0.317 6.317 21 C -0.007 4.007 22 H 0.087 0.913 23 H 0.093 0.907 24 H 0.030 0.970 25 H 0.133 0.867 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.027 0.973 30 H 0.026 0.974 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.129 0.871 38 H 0.081 0.919 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 16.338 -11.752 10.289 22.603 hybrid contribution -0.767 0.840 -0.248 1.164 sum 15.572 -10.912 10.041 21.503 Atomic orbital electron populations 1.22498 0.86989 1.00984 1.01523 1.62033 1.08304 1.13440 1.42142 1.22311 1.01275 0.88183 0.95265 1.22674 0.82959 0.99094 0.97553 1.87908 1.23562 1.82584 1.37627 1.20281 0.94425 0.92159 0.82823 1.21156 0.91428 1.42014 1.03319 0.95086 1.25820 0.96750 0.94879 1.01033 1.70037 1.12545 1.46061 1.29610 0.85620 0.79464 0.78912 0.78420 1.18509 1.19954 1.16938 1.22299 0.96672 0.95217 0.91742 0.94554 1.21732 1.00430 0.93693 0.99774 1.22180 0.96371 1.01640 0.98437 1.22806 0.93775 0.82653 1.03085 1.87918 1.70426 1.23249 1.50067 1.22631 0.91291 0.96394 0.90357 0.91296 0.90693 0.96970 0.86709 0.94873 0.92803 0.92289 0.97257 0.97402 0.91874 0.91578 0.91024 0.88727 0.91537 0.92288 0.87109 0.91869 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 8.81 127.69 1.13 2.06 16 2 N -0.53 -15.38 4.58 -896.52 -4.11 -19.49 16 3 C 0.06 1.60 5.39 86.31 0.47 2.07 16 4 C 0.05 1.82 6.23 71.98 0.45 2.27 16 5 O -0.40 -18.08 7.41 -148.98 -1.10 -19.18 16 6 C 0.18 8.95 4.76 71.23 0.34 9.29 16 7 C -0.54 -32.90 9.99 25.60 0.26 -32.64 16 8 H 0.03 2.12 8.06 -2.91 -0.02 2.09 16 9 C 0.01 0.77 5.47 84.65 0.46 1.23 16 10 N -0.94 -59.48 13.96 21.45 0.30 -59.18 16 11 Si 0.95 43.53 27.47 68.60 1.88 45.42 16 12 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 13 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 14 H -0.25 -10.34 6.54 99.48 0.65 -9.69 16 15 C 0.05 1.16 2.14 45.00 0.10 1.25 16 16 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 17 C -0.12 -2.43 4.88 30.72 0.15 -2.28 16 18 C -0.15 -2.32 6.13 30.69 0.19 -2.13 16 19 C 0.05 0.82 6.84 72.01 0.49 1.31 16 20 O -0.40 -8.41 10.77 -148.98 -1.60 -10.01 16 21 C 0.07 1.45 5.88 72.01 0.42 1.87 16 22 H 0.07 2.90 5.75 -2.39 -0.01 2.88 16 23 H 0.07 2.20 5.78 -2.39 -0.01 2.19 16 24 H 0.01 0.41 7.98 -2.38 -0.02 0.39 16 25 H 0.12 2.42 5.67 -2.39 -0.01 2.41 16 26 H 0.03 1.00 7.93 -2.39 -0.02 0.98 16 27 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.01 0.47 7.20 -2.39 -0.02 0.45 16 30 H 0.01 0.40 7.57 -2.39 -0.02 0.38 16 31 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 32 H 0.07 1.42 6.33 -2.38 -0.02 1.41 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.10 1.88 6.22 -2.39 -0.01 1.86 16 Total: -1.00 -69.11 301.55 0.76 -68.34 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.95 Total: 9.80 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 4.45 Total: -15.70 kcal Atomic # 7 Polarization: -74.86 SS G_CDS: -3.81 Total: -78.67 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -2.71 Total: -29.19 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.88 Total: 45.42 kcal Total: -69.11 0.76 -68.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339190679.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.770 kcal (2) G-P(sol) polarization free energy of solvation -69.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds