Wall clock time and date at job start Mon Mar 30 2020 03:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 114.00130 * 2 1 4 4 C 1.52996 * 109.47172 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46906 * 180.29801 * 4 3 2 6 6 N 1.46901 * 110.43653 * 298.21942 * 5 4 3 7 7 C 1.46899 * 110.99995 * 301.86816 * 6 5 4 8 8 H 1.08997 * 109.47624 * 349.32914 * 7 6 5 9 9 C 1.53005 * 109.47102 * 109.33023 * 7 6 5 10 10 C 1.50700 * 109.47257 * 229.33063 * 7 6 5 11 11 H 1.08002 * 119.99542 * 354.82294 * 10 7 6 12 12 C 1.37873 * 120.00451 * 174.82648 * 10 7 6 13 13 N 1.31514 * 120.00205 * 161.86622 * 12 10 7 14 14 Si 1.86802 * 119.99983 * 341.86807 * 12 10 7 15 15 H 1.48497 * 109.47373 * 179.97438 * 14 12 10 16 16 H 1.48503 * 109.46865 * 59.99677 * 14 12 10 17 17 H 1.48504 * 109.46758 * 300.00199 * 14 12 10 18 18 C 1.54816 * 110.59696 * 175.59871 * 5 4 3 19 19 C 1.54997 * 102.08958 * 220.38840 * 18 5 4 20 20 O 1.44380 * 103.49108 * 37.02402 * 19 18 5 21 21 C 1.43749 * 106.97587 * 319.93840 * 20 19 18 22 22 H 1.09005 * 109.46686 * 299.99844 * 1 2 3 23 23 H 1.08996 * 109.46899 * 59.99884 * 1 2 3 24 24 H 1.08991 * 109.47110 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46914 * 59.99817 * 3 2 1 26 26 H 1.09001 * 109.47309 * 300.00326 * 3 2 1 27 27 H 1.08999 * 109.46711 * 60.30171 * 4 3 2 28 28 H 1.08994 * 109.47262 * 300.30452 * 4 3 2 29 29 H 1.00896 * 111.00060 * 65.82133 * 6 5 4 30 30 H 1.08997 * 109.47205 * 178.03088 * 9 7 6 31 31 H 1.08994 * 109.47049 * 298.03383 * 9 7 6 32 32 H 1.09006 * 109.46456 * 58.03738 * 9 7 6 33 33 H 0.97000 * 120.00062 * 354.92763 * 13 12 10 34 34 H 1.09001 * 110.90922 * 338.58700 * 18 5 4 35 35 H 1.08995 * 110.90578 * 102.19215 * 18 5 4 36 36 H 1.09003 * 110.61490 * 278.52258 * 19 18 5 37 37 H 1.09005 * 110.61620 * 155.52607 * 19 18 5 38 38 H 1.08997 * 109.87771 * 267.08689 * 21 20 19 39 39 H 1.08998 * 109.87647 * 145.93218 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1578 2.5824 0.0081 6 7 3.7728 3.3218 -1.2014 7 6 4.1878 2.6020 -2.4129 8 1 4.8503 1.7811 -2.1388 9 6 2.9526 2.0450 -3.1235 10 6 4.9142 3.5473 -3.3348 11 1 4.9809 4.5968 -3.0887 12 6 5.4935 3.0724 -4.4922 13 7 5.8079 3.9055 -5.4600 14 14 5.8319 1.2455 -4.6859 15 1 6.4538 0.9949 -6.0109 16 1 4.5556 0.4927 -4.5884 17 1 6.7546 0.7966 -3.6124 18 6 5.6992 2.4917 0.1202 19 6 6.0224 3.6505 1.0976 20 8 4.9226 3.6191 2.0325 21 6 3.7321 3.3555 1.2713 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6887 1.8464 0.8900 26 1 1.6887 1.8465 -0.8899 27 1 3.8578 0.6483 -0.8918 28 1 3.8564 0.6392 0.8881 29 1 2.7808 3.5059 -1.2122 30 1 3.2575 1.5410 -4.0407 31 1 2.4466 1.3348 -2.4696 32 1 2.2739 2.8626 -3.3667 33 1 5.5659 4.8424 -5.3912 34 1 6.0030 1.5327 0.5398 35 1 6.1700 2.6574 -0.8488 36 1 6.0491 4.6029 0.5682 37 1 6.9671 3.4682 1.6099 38 1 3.2574 4.2951 0.9885 39 1 3.0417 2.7517 1.8603 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379931575.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:28 Heat of formation + Delta-G solvation = -88.261436 kcal Electronic energy + Delta-G solvation = -19179.015385 eV Core-core repulsion = 16314.936684 eV Total energy + Delta-G solvation = -2864.078702 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.88451 -37.77686 -36.17611 -33.23949 -31.29896 -30.26897 -28.84855 -26.90354 -25.98967 -24.74768 -23.74152 -21.76352 -20.29407 -18.70058 -17.52096 -16.79929 -16.36285 -15.81696 -15.42764 -14.99982 -14.69820 -14.20722 -13.89921 -13.68565 -13.30732 -12.68588 -12.47079 -12.23282 -11.99647 -11.88271 -11.60495 -11.36077 -11.28478 -10.81747 -10.73767 -10.67671 -10.49421 -10.22116 -9.90521 -9.71311 -9.57633 -9.35878 -8.95148 -8.27348 -7.55920 -6.38671 -3.99663 3.35930 3.40732 3.57794 3.72442 4.23575 4.49838 4.75220 4.81256 5.07905 5.13359 5.24583 5.25448 5.29949 5.32078 5.40186 5.49754 5.55791 5.58299 5.74800 5.96971 5.98159 6.03300 6.12749 6.24297 6.32285 6.34776 6.41881 6.47428 6.65331 6.82044 7.10056 7.11368 7.17433 7.79736 8.18906 8.28843 8.47753 9.05754 9.66533 10.97249 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.017871 B = 0.009672 C = 0.007151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.394569 B = 2894.158767 C = 3914.451014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.055 3.945 4 C -0.143 4.143 5 C 0.088 3.912 6 N -0.657 5.657 7 C 0.188 3.812 8 H 0.023 0.977 9 C -0.183 4.183 10 C -0.578 4.578 11 H 0.064 0.936 12 C 0.030 3.970 13 N -0.908 5.908 14 Si 1.033 2.967 15 H -0.286 1.286 16 H -0.276 1.276 17 H -0.284 1.284 18 C -0.143 4.143 19 C 0.055 3.945 20 O -0.385 6.385 21 C 0.057 3.943 22 H 0.039 0.961 23 H 0.041 0.959 24 H 0.083 0.917 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.325 0.675 30 H 0.060 0.940 31 H 0.028 0.972 32 H 0.046 0.954 33 H 0.268 0.732 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.954 -5.504 11.864 14.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.021 4.021 4 C -0.182 4.182 5 C -0.005 4.005 6 N -0.288 5.288 7 C 0.080 3.920 8 H 0.041 0.959 9 C -0.242 4.242 10 C -0.617 4.617 11 H 0.082 0.918 12 C -0.175 4.175 13 N -0.543 5.543 14 Si 0.862 3.138 15 H -0.211 1.211 16 H -0.203 1.203 17 H -0.210 1.210 18 C -0.181 4.181 19 C -0.021 4.021 20 O -0.304 6.304 21 C -0.021 4.021 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.102 0.898 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.143 0.857 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.122 0.878 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.577 -6.331 11.067 13.916 hybrid contribution -1.692 0.560 0.649 1.897 sum -7.269 -5.771 11.716 14.947 Atomic orbital electron populations 1.22718 0.81412 1.02491 0.99906 1.87875 1.19412 1.28292 1.95406 1.22758 0.94423 0.84648 1.00314 1.22297 0.93149 0.98965 1.03815 1.22249 0.95534 0.90519 0.92203 1.60977 1.19892 1.47224 1.00709 1.19553 0.92420 0.93447 0.86579 0.95943 1.22961 1.00289 0.99569 1.01378 1.22021 1.37498 0.96202 1.05935 0.91798 1.25613 0.94209 1.05779 0.91922 1.70826 1.45972 1.05918 1.31551 0.84246 0.76968 0.76243 0.76383 1.21142 1.20253 1.21044 1.23204 0.94336 0.98452 1.02111 1.23484 0.89812 0.98719 0.90114 1.88776 1.16604 1.93100 1.31928 1.23308 0.88295 0.99094 0.91371 0.94287 0.94053 0.89829 0.93472 0.92449 0.90128 0.91042 0.85731 0.92162 0.95325 0.93441 0.92188 0.91194 0.87789 0.91464 0.89703 0.91725 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.39 -5.75 10.70 -35.23 -0.38 -6.13 16 3 C 0.05 0.78 4.82 37.16 0.18 0.96 16 4 C -0.14 -2.23 3.88 -26.73 -0.10 -2.34 16 5 C 0.09 1.45 0.51 -130.07 -0.07 1.38 16 6 N -0.66 -12.67 5.79 -92.71 -0.54 -13.20 16 7 C 0.19 4.20 0.85 -68.86 -0.06 4.14 16 8 H 0.02 0.52 4.24 -51.93 -0.22 0.30 16 9 C -0.18 -3.85 8.13 37.16 0.30 -3.55 16 10 C -0.58 -15.72 9.10 -34.44 -0.31 -16.03 16 11 H 0.06 1.93 8.06 -52.49 -0.42 1.50 16 12 C 0.03 0.84 5.31 -17.82 -0.09 0.74 16 13 N -0.91 -27.57 13.70 55.43 0.76 -26.81 16 14 Si 1.03 24.73 26.35 -169.99 -4.48 20.25 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.28 -6.14 5.65 56.52 0.32 -5.82 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 C -0.14 -2.42 5.85 -24.72 -0.14 -2.57 16 19 C 0.05 0.86 7.72 38.21 0.29 1.16 16 20 O -0.39 -6.34 11.52 -35.23 -0.41 -6.75 16 21 C 0.06 0.86 6.66 37.73 0.25 1.11 16 22 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.59 6.49 -51.93 -0.34 0.26 16 26 H 0.06 0.85 4.92 -51.93 -0.26 0.60 16 27 H 0.08 1.42 6.09 -51.93 -0.32 1.10 16 28 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16 29 H 0.32 5.80 6.77 -39.29 -0.27 5.53 16 30 H 0.06 1.35 4.81 -51.93 -0.25 1.10 16 31 H 0.03 0.53 5.11 -51.93 -0.27 0.26 16 32 H 0.05 0.98 8.13 -51.93 -0.42 0.56 16 33 H 0.27 8.15 8.73 -40.82 -0.36 7.79 16 34 H 0.07 1.07 7.86 -51.93 -0.41 0.66 16 35 H 0.10 2.06 6.81 -51.93 -0.35 1.70 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.06 0.98 7.93 -51.93 -0.41 0.57 16 39 H 0.08 1.04 6.31 -51.93 -0.33 0.71 16 LS Contribution 292.88 15.07 4.41 4.41 Total: -1.00 -29.96 292.88 -5.29 -35.25 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -6.03 Total: 6.51 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 1.36 Total: -13.53 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.22 Total: -40.02 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -0.78 Total: -12.87 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -4.48 Total: 20.25 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.96 -5.29 -35.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379931575.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.012 kcal (2) G-P(sol) polarization free energy of solvation -29.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds