Wall clock time and date at job start Mon Mar 30 2020 03:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 114.00130 * 2 1 4 4 C 1.52996 * 109.47172 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46906 * 180.29801 * 4 3 2 6 6 N 1.46901 * 110.43653 * 298.21942 * 5 4 3 7 7 C 1.46899 * 110.99995 * 301.86816 * 6 5 4 8 8 H 1.08997 * 109.47624 * 349.32914 * 7 6 5 9 9 C 1.53005 * 109.47102 * 109.33023 * 7 6 5 10 10 C 1.50700 * 109.47257 * 229.33063 * 7 6 5 11 11 H 1.08002 * 119.99542 * 354.82294 * 10 7 6 12 12 C 1.37873 * 120.00451 * 174.82648 * 10 7 6 13 13 N 1.31514 * 120.00205 * 161.86622 * 12 10 7 14 14 Si 1.86802 * 119.99983 * 341.86807 * 12 10 7 15 15 H 1.48497 * 109.47373 * 179.97438 * 14 12 10 16 16 H 1.48503 * 109.46865 * 59.99677 * 14 12 10 17 17 H 1.48504 * 109.46758 * 300.00199 * 14 12 10 18 18 C 1.54816 * 110.59696 * 175.59871 * 5 4 3 19 19 C 1.54997 * 102.08958 * 220.38840 * 18 5 4 20 20 O 1.44380 * 103.49108 * 37.02402 * 19 18 5 21 21 C 1.43749 * 106.97587 * 319.93840 * 20 19 18 22 22 H 1.09005 * 109.46686 * 299.99844 * 1 2 3 23 23 H 1.08996 * 109.46899 * 59.99884 * 1 2 3 24 24 H 1.08991 * 109.47110 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46914 * 59.99817 * 3 2 1 26 26 H 1.09001 * 109.47309 * 300.00326 * 3 2 1 27 27 H 1.08999 * 109.46711 * 60.30171 * 4 3 2 28 28 H 1.08994 * 109.47262 * 300.30452 * 4 3 2 29 29 H 1.00896 * 111.00060 * 65.82133 * 6 5 4 30 30 H 1.08997 * 109.47205 * 178.03088 * 9 7 6 31 31 H 1.08994 * 109.47049 * 298.03383 * 9 7 6 32 32 H 1.09006 * 109.46456 * 58.03738 * 9 7 6 33 33 H 0.97000 * 120.00062 * 354.92763 * 13 12 10 34 34 H 1.09001 * 110.90922 * 338.58700 * 18 5 4 35 35 H 1.08995 * 110.90578 * 102.19215 * 18 5 4 36 36 H 1.09003 * 110.61490 * 278.52258 * 19 18 5 37 37 H 1.09005 * 110.61620 * 155.52607 * 19 18 5 38 38 H 1.08997 * 109.87771 * 267.08689 * 21 20 19 39 39 H 1.08998 * 109.87647 * 145.93218 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1578 2.5824 0.0081 6 7 3.7728 3.3218 -1.2014 7 6 4.1878 2.6020 -2.4129 8 1 4.8503 1.7811 -2.1388 9 6 2.9526 2.0450 -3.1235 10 6 4.9142 3.5473 -3.3348 11 1 4.9809 4.5968 -3.0887 12 6 5.4935 3.0724 -4.4922 13 7 5.8079 3.9055 -5.4600 14 14 5.8319 1.2455 -4.6859 15 1 6.4538 0.9949 -6.0109 16 1 4.5556 0.4927 -4.5884 17 1 6.7546 0.7966 -3.6124 18 6 5.6992 2.4917 0.1202 19 6 6.0224 3.6505 1.0976 20 8 4.9226 3.6191 2.0325 21 6 3.7321 3.3555 1.2713 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6887 1.8464 0.8900 26 1 1.6887 1.8465 -0.8899 27 1 3.8578 0.6483 -0.8918 28 1 3.8564 0.6392 0.8881 29 1 2.7808 3.5059 -1.2122 30 1 3.2575 1.5410 -4.0407 31 1 2.4466 1.3348 -2.4696 32 1 2.2739 2.8626 -3.3667 33 1 5.5659 4.8424 -5.3912 34 1 6.0030 1.5327 0.5398 35 1 6.1700 2.6574 -0.8488 36 1 6.0491 4.6029 0.5682 37 1 6.9671 3.4682 1.6099 38 1 3.2574 4.2951 0.9885 39 1 3.0417 2.7517 1.8603 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379931575.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:28 Heat of formation + Delta-G solvation = -111.531101 kcal Electronic energy + Delta-G solvation = -19180.024434 eV Core-core repulsion = 16314.936684 eV Total energy + Delta-G solvation = -2865.087750 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.20447 -38.84443 -37.66351 -35.07249 -33.07709 -31.52115 -30.25378 -28.19417 -27.06473 -26.68909 -24.96985 -23.06427 -22.00350 -20.15128 -19.56095 -18.03598 -17.56842 -17.01202 -16.60558 -16.22579 -15.91703 -15.85420 -15.46679 -15.15214 -14.74895 -14.23592 -13.85381 -13.77055 -13.50178 -13.35057 -13.10651 -12.83671 -12.41969 -12.28957 -12.12287 -12.08409 -11.97415 -11.72768 -11.59677 -11.37433 -11.03216 -10.67122 -10.57292 -10.41165 -9.20245 -8.59310 -6.25101 1.44207 1.49876 1.68308 2.50390 2.71207 2.98641 3.09316 3.37900 3.50623 3.90909 4.01011 4.07731 4.16142 4.32109 4.34196 4.44242 4.51547 4.52249 4.54209 4.63903 4.73530 4.74687 4.79492 4.82658 4.84681 4.98525 5.01703 5.02931 5.14568 5.21017 5.42986 5.80534 5.96394 6.14082 6.18400 6.43510 6.70222 6.81477 7.50877 8.70719 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.017871 B = 0.009672 C = 0.007151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.394569 B = 2894.158767 C = 3914.451014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.412 6.412 3 C 0.058 3.942 4 C -0.137 4.137 5 C 0.088 3.912 6 N -0.670 5.670 7 C 0.198 3.802 8 H 0.025 0.975 9 C -0.175 4.175 10 C -0.574 4.574 11 H 0.020 0.980 12 C -0.021 4.021 13 N -0.944 5.944 14 Si 1.070 2.930 15 H -0.293 1.293 16 H -0.245 1.245 17 H -0.265 1.265 18 C -0.147 4.147 19 C 0.058 3.942 20 O -0.391 6.391 21 C 0.060 3.940 22 H 0.055 0.945 23 H 0.043 0.957 24 H 0.099 0.901 25 H 0.068 0.932 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.334 0.666 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.251 0.749 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.110 0.890 38 H 0.063 0.937 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.172 -7.555 13.887 17.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.332 6.332 3 C -0.018 4.018 4 C -0.177 4.177 5 C -0.004 4.004 6 N -0.301 5.301 7 C 0.088 3.912 8 H 0.043 0.957 9 C -0.234 4.234 10 C -0.613 4.613 11 H 0.038 0.962 12 C -0.219 4.219 13 N -0.581 5.581 14 Si 0.893 3.107 15 H -0.219 1.219 16 H -0.170 1.170 17 H -0.190 1.190 18 C -0.185 4.185 19 C -0.018 4.018 20 O -0.310 6.310 21 C -0.017 4.017 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.117 0.883 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.153 0.847 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.128 0.872 38 H 0.081 0.919 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.825 -8.373 13.126 17.000 hybrid contribution -1.347 1.293 0.098 1.870 sum -8.172 -7.080 13.225 17.082 Atomic orbital electron populations 1.22946 0.79530 1.03926 1.00816 1.87838 1.21491 1.28293 1.95577 1.22678 0.93349 0.84891 1.00913 1.22190 0.94321 0.97667 1.03495 1.22287 0.95413 0.91300 0.91435 1.60740 1.20687 1.47890 1.00786 1.19257 0.92598 0.92254 0.87059 0.95704 1.22807 0.99568 0.99950 1.01058 1.22222 1.37327 0.94996 1.06753 0.96205 1.26945 0.93869 1.09287 0.91781 1.70955 1.48592 1.05345 1.33240 0.83776 0.78590 0.71856 0.76491 1.21901 1.17002 1.19043 1.23214 0.94567 0.99908 1.00784 1.23478 0.90894 0.97415 0.90036 1.88775 1.16987 1.93133 1.32111 1.23355 0.88275 0.99257 0.90830 0.92649 0.93855 0.88266 0.91423 0.93279 0.92044 0.89707 0.84704 0.93492 0.92447 0.93718 0.93980 0.89218 0.91122 0.93272 0.87153 0.91892 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 11.01 113.37 1.25 1.68 16 2 O -0.41 -10.73 10.70 -148.98 -1.59 -12.33 16 3 C 0.06 1.46 4.82 71.98 0.35 1.80 16 4 C -0.14 -3.89 3.88 30.59 0.12 -3.77 16 5 C 0.09 2.73 0.51 4.52 0.00 2.73 16 6 N -0.67 -25.23 5.79 -447.23 -2.59 -27.82 16 7 C 0.20 8.68 0.85 44.17 0.04 8.72 16 8 H 0.03 1.11 4.24 -2.39 -0.01 1.10 16 9 C -0.18 -7.07 8.13 71.98 0.59 -6.49 16 10 C -0.57 -32.01 9.10 25.60 0.23 -31.78 16 11 H 0.02 1.25 8.06 -2.91 -0.02 1.22 16 12 C -0.02 -1.22 5.31 84.65 0.45 -0.77 16 13 N -0.94 -59.39 13.70 21.45 0.29 -59.10 16 14 Si 1.07 49.48 26.35 68.60 1.81 51.29 16 15 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 16 H -0.25 -10.10 5.65 99.48 0.56 -9.54 16 17 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 18 C -0.15 -4.76 5.85 31.90 0.19 -4.57 16 19 C 0.06 1.74 7.72 72.67 0.56 2.30 16 20 O -0.39 -11.89 11.52 -148.98 -1.72 -13.61 16 21 C 0.06 1.65 6.66 72.35 0.48 2.13 16 22 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 23 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.07 1.42 6.49 -2.39 -0.02 1.40 16 26 H 0.05 1.31 4.92 -2.39 -0.01 1.29 16 27 H 0.06 1.99 6.09 -2.39 -0.01 1.98 16 28 H 0.08 2.19 8.12 -2.39 -0.02 2.17 16 29 H 0.33 11.47 6.77 -89.70 -0.61 10.86 16 30 H 0.05 2.01 4.81 -2.39 -0.01 2.00 16 31 H 0.06 1.98 5.11 -2.39 -0.01 1.97 16 32 H 0.04 1.79 8.13 -2.38 -0.02 1.78 16 33 H 0.25 16.11 8.73 -92.71 -0.81 15.30 16 34 H 0.09 2.52 7.86 -2.39 -0.02 2.50 16 35 H 0.07 2.79 6.81 -2.39 -0.02 2.77 16 36 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.11 2.72 8.14 -2.38 -0.02 2.70 16 38 H 0.06 1.77 7.93 -2.39 -0.02 1.75 16 39 H 0.10 2.33 6.31 -2.39 -0.02 2.32 16 Total: -1.00 -65.87 292.88 0.71 -65.16 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 0.26 Total: 24.40 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: 4.25 Total: -28.01 kcal Atomic # 7 Polarization: -84.62 SS G_CDS: -2.29 Total: -86.92 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -3.31 Total: -25.94 kcal Atomic # 14 Polarization: 49.48 SS G_CDS: 1.81 Total: 51.29 kcal Total: -65.87 0.71 -65.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379931575.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.369 kcal (2) G-P(sol) polarization free energy of solvation -65.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds