Wall clock time and date at job start Mon Mar 30 2020 03:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47046 * 2 1 4 4 C 1.50705 * 109.46905 * 119.99714 * 2 1 3 5 5 H 1.07997 * 119.99777 * 119.99988 * 4 2 1 6 6 C 1.37880 * 120.00042 * 299.99829 * 4 2 1 7 7 N 1.31520 * 119.99652 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00141 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46946 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47351 * 120.00038 * 8 6 4 11 11 H 1.48506 * 109.46936 * 240.00285 * 8 6 4 12 12 N 1.46900 * 109.47370 * 239.99471 * 2 1 3 13 13 C 1.46898 * 110.99589 * 84.99775 * 12 2 1 14 14 C 1.53001 * 109.46893 * 180.02562 * 13 12 2 15 15 H 1.08999 * 109.47164 * 60.00204 * 14 13 12 16 16 O 1.42903 * 109.47171 * 299.99938 * 14 13 12 17 17 C 1.53003 * 109.47376 * 180.02562 * 14 13 12 18 18 C 1.53184 * 109.53982 * 299.82133 * 17 14 13 19 19 C 1.53100 * 109.15349 * 183.24113 * 18 17 14 20 20 O 1.42900 * 109.49046 * 57.47651 * 19 18 17 21 21 C 1.42900 * 114.09501 * 298.88669 * 20 19 18 22 22 C 1.53094 * 109.41701 * 61.15678 * 21 20 19 23 23 H 1.09004 * 109.47057 * 60.00289 * 1 2 3 24 24 H 1.09000 * 109.47144 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47337 * 300.00231 * 1 2 3 26 26 H 0.96998 * 119.99577 * 180.02562 * 7 6 4 27 27 H 1.00904 * 110.99777 * 321.05042 * 12 2 1 28 28 H 1.08999 * 109.47049 * 60.00398 * 13 12 2 29 29 H 1.08997 * 109.47646 * 300.00448 * 13 12 2 30 30 H 0.96700 * 114.00311 * 300.00378 * 16 14 13 31 31 H 1.08997 * 109.54588 * 59.99568 * 17 14 13 32 32 H 1.09000 * 109.52050 * 303.05674 * 18 17 14 33 33 H 1.08996 * 109.52200 * 63.24604 * 18 17 14 34 34 H 1.09005 * 109.40583 * 297.48789 * 19 18 17 35 35 H 1.09000 * 109.47919 * 177.50569 * 19 18 17 36 36 H 1.09009 * 109.48302 * 301.17388 * 21 20 19 37 37 H 1.09004 * 109.48362 * 181.14162 * 21 20 19 38 38 H 1.08998 * 109.51983 * 182.48292 * 22 21 20 39 39 H 1.08997 * 109.56948 * 62.33037 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6033 8 14 2.3224 -1.1193 4.0081 9 1 3.1472 -2.2861 3.6040 10 1 3.1471 -0.1855 4.8162 11 1 1.1676 -1.5863 4.8166 12 7 2.0197 -0.6926 -1.1993 13 6 2.0825 0.2224 -2.3468 14 6 2.5951 -0.5334 -3.5744 15 1 1.9184 -1.3568 -3.8028 16 8 3.9000 -1.0499 -3.3051 17 6 2.6611 0.4197 -4.7694 18 6 1.2624 0.9715 -5.0625 19 6 1.3237 1.8597 -6.3080 20 8 1.8340 1.1038 -7.4081 21 6 3.1578 0.6040 -7.2084 22 6 3.1699 -0.3364 -6.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 0.7087 1.1615 3.4843 27 1 1.4496 -1.4980 -1.4099 28 1 2.7588 1.0460 -2.1182 29 1 1.0871 0.6162 -2.5525 30 1 4.5557 -0.3714 -3.0934 31 1 3.3377 1.2434 -4.5420 32 1 0.5745 0.1448 -5.2397 33 1 0.9167 1.5583 -4.2116 34 1 1.9792 2.7091 -6.1153 35 1 0.3231 2.2197 -6.5474 36 1 3.8374 1.4369 -7.0275 37 1 3.4786 0.0593 -8.0964 38 1 4.1871 -0.6841 -5.8198 39 1 2.5224 -1.1910 -6.1966 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380090886.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:57 Heat of formation + Delta-G solvation = -113.560128 kcal Electronic energy + Delta-G solvation = -18230.481366 eV Core-core repulsion = 15365.305630 eV Total energy + Delta-G solvation = -2865.175735 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.75286 -37.50402 -35.40444 -33.57796 -32.39815 -31.22280 -29.35049 -26.87350 -25.14910 -24.15768 -23.38169 -21.32648 -20.47227 -19.98068 -16.80323 -16.37859 -16.12055 -15.83670 -15.31884 -14.80205 -14.57467 -14.43775 -13.89582 -13.70720 -13.19553 -12.71417 -12.56310 -12.39246 -11.80937 -11.58619 -11.46943 -11.44566 -10.95275 -10.88105 -10.75761 -10.55256 -10.47111 -10.35461 -10.14278 -10.08100 -9.82936 -9.29819 -8.90634 -8.35800 -7.16863 -5.97747 -4.00522 3.32513 3.40143 3.46454 3.74296 4.37564 4.48087 4.54796 4.72805 4.85023 4.95855 5.11244 5.19795 5.27937 5.33990 5.46473 5.47926 5.52209 5.58856 5.71564 5.79194 5.84632 5.99771 6.01433 6.17885 6.21308 6.45376 6.67287 6.82517 7.04905 7.08855 7.35294 7.73491 7.90342 7.98341 8.28483 8.55343 8.63860 9.07908 9.65039 11.09436 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.047680 B = 0.004527 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.112985 B = 6183.324273 C = 6589.918258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.210 3.790 3 H 0.031 0.969 4 C -0.492 4.492 5 H 0.063 0.937 6 C 0.053 3.947 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.675 5.675 13 C 0.028 3.972 14 C 0.118 3.882 15 H 0.090 0.910 16 O -0.547 6.547 17 C -0.120 4.120 18 C -0.153 4.153 19 C 0.062 3.938 20 O -0.387 6.387 21 C 0.060 3.940 22 C -0.144 4.144 23 H 0.003 0.997 24 H 0.027 0.973 25 H 0.089 0.911 26 H 0.258 0.742 27 H 0.325 0.675 28 H 0.064 0.936 29 H 0.027 0.973 30 H 0.370 0.630 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.092 0.908 36 H 0.048 0.952 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.268 1.748 -16.829 17.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.049 0.951 4 C -0.531 4.531 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.212 1.212 12 N -0.304 5.304 13 C -0.102 4.102 14 C 0.058 3.942 15 H 0.108 0.892 16 O -0.351 6.351 17 C -0.139 4.139 18 C -0.190 4.190 19 C -0.015 4.015 20 O -0.306 6.306 21 C -0.017 4.017 22 C -0.182 4.182 23 H 0.022 0.978 24 H 0.047 0.953 25 H 0.107 0.893 26 H 0.068 0.932 27 H 0.141 0.859 28 H 0.082 0.918 29 H 0.045 0.955 30 H 0.216 0.784 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.111 0.889 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.461 1.341 -16.796 17.028 hybrid contribution -0.407 0.403 1.126 1.263 sum 2.053 1.744 -15.670 15.900 Atomic orbital electron populations 1.22437 1.00829 0.99185 1.00378 1.19190 0.89496 0.94300 0.86763 0.95134 1.21222 1.29932 1.12370 0.89566 0.91832 1.24963 0.95378 0.95236 0.99080 1.69898 1.37534 1.23341 1.23187 0.86449 0.78508 0.79692 0.82813 1.19688 1.21167 1.21234 1.60717 1.58063 1.08617 1.03000 1.22641 0.99051 0.96421 0.92085 1.21920 0.85374 0.95451 0.91455 0.89190 1.86562 1.19194 1.37444 1.91895 1.21919 0.97174 0.98742 0.96096 1.22264 0.97306 1.00783 0.98687 1.22579 0.99418 0.93013 0.86500 1.87910 1.31113 1.71317 1.40218 1.22603 0.84071 0.96502 0.98500 1.22140 1.02812 0.98873 0.94377 0.97779 0.95336 0.89276 0.93185 0.85886 0.91787 0.95521 0.78352 0.90924 0.90915 0.90137 0.93295 0.88946 0.93408 0.89090 0.90234 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 8.94 37.16 0.33 -3.74 16 2 C 0.21 5.30 2.57 -68.86 -0.18 5.12 16 3 H 0.03 0.84 7.80 -51.93 -0.40 0.44 16 4 C -0.49 -13.79 8.84 -34.44 -0.30 -14.09 16 5 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 6 C 0.05 1.50 5.30 -17.82 -0.09 1.40 16 7 N -0.90 -25.87 11.32 55.43 0.63 -25.25 16 8 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 N -0.67 -14.34 6.10 -107.95 -0.66 -15.00 16 13 C 0.03 0.48 4.80 -3.82 -0.02 0.46 16 14 C 0.12 1.65 2.76 -26.73 -0.07 1.58 16 15 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 16 O -0.55 -8.24 12.61 -35.23 -0.44 -8.69 16 17 C -0.12 -1.35 2.04 -90.43 -0.18 -1.54 16 18 C -0.15 -1.67 4.98 -26.58 -0.13 -1.80 16 19 C 0.06 0.62 6.84 37.21 0.25 0.88 16 20 O -0.39 -4.51 10.77 -35.23 -0.38 -4.89 16 21 C 0.06 0.58 6.84 37.21 0.25 0.84 16 22 C -0.14 -1.51 5.23 -26.59 -0.14 -1.65 16 23 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 24 H 0.03 0.66 8.13 -51.93 -0.42 0.24 16 25 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 26 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.32 6.73 8.47 -39.29 -0.33 6.39 16 28 H 0.06 1.11 8.06 -51.93 -0.42 0.70 16 29 H 0.03 0.45 5.81 -51.93 -0.30 0.15 16 30 H 0.37 4.60 9.05 45.56 0.41 5.01 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.91 6.63 -51.93 -0.34 0.56 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.81 7.80 -51.93 -0.40 0.40 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 307.31 15.07 4.63 4.63 Total: -1.00 -30.14 307.31 -7.37 -37.51 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.85 Total: 7.55 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -0.28 Total: -12.54 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: -0.03 Total: -40.24 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.82 Total: -13.58 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.14 -7.37 -37.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380090886.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.050 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds