Wall clock time and date at job start Mon Mar 30 2020 03:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47046 * 2 1 4 4 C 1.50705 * 109.46905 * 119.99714 * 2 1 3 5 5 H 1.07997 * 119.99777 * 119.99988 * 4 2 1 6 6 C 1.37880 * 120.00042 * 299.99829 * 4 2 1 7 7 N 1.31520 * 119.99652 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00141 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46946 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47351 * 120.00038 * 8 6 4 11 11 H 1.48506 * 109.46936 * 240.00285 * 8 6 4 12 12 N 1.46900 * 109.47370 * 239.99471 * 2 1 3 13 13 C 1.46898 * 110.99589 * 84.99775 * 12 2 1 14 14 C 1.53001 * 109.46893 * 180.02562 * 13 12 2 15 15 H 1.08999 * 109.47164 * 60.00204 * 14 13 12 16 16 O 1.42903 * 109.47171 * 299.99938 * 14 13 12 17 17 C 1.53003 * 109.47376 * 180.02562 * 14 13 12 18 18 C 1.53184 * 109.53982 * 299.82133 * 17 14 13 19 19 C 1.53100 * 109.15349 * 183.24113 * 18 17 14 20 20 O 1.42900 * 109.49046 * 57.47651 * 19 18 17 21 21 C 1.42900 * 114.09501 * 298.88669 * 20 19 18 22 22 C 1.53094 * 109.41701 * 61.15678 * 21 20 19 23 23 H 1.09004 * 109.47057 * 60.00289 * 1 2 3 24 24 H 1.09000 * 109.47144 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47337 * 300.00231 * 1 2 3 26 26 H 0.96998 * 119.99577 * 180.02562 * 7 6 4 27 27 H 1.00904 * 110.99777 * 321.05042 * 12 2 1 28 28 H 1.08999 * 109.47049 * 60.00398 * 13 12 2 29 29 H 1.08997 * 109.47646 * 300.00448 * 13 12 2 30 30 H 0.96700 * 114.00311 * 300.00378 * 16 14 13 31 31 H 1.08997 * 109.54588 * 59.99568 * 17 14 13 32 32 H 1.09000 * 109.52050 * 303.05674 * 18 17 14 33 33 H 1.08996 * 109.52200 * 63.24604 * 18 17 14 34 34 H 1.09005 * 109.40583 * 297.48789 * 19 18 17 35 35 H 1.09000 * 109.47919 * 177.50569 * 19 18 17 36 36 H 1.09009 * 109.48302 * 301.17388 * 21 20 19 37 37 H 1.09004 * 109.48362 * 181.14162 * 21 20 19 38 38 H 1.08998 * 109.51983 * 182.48292 * 22 21 20 39 39 H 1.08997 * 109.56948 * 62.33037 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6033 8 14 2.3224 -1.1193 4.0081 9 1 3.1472 -2.2861 3.6040 10 1 3.1471 -0.1855 4.8162 11 1 1.1676 -1.5863 4.8166 12 7 2.0197 -0.6926 -1.1993 13 6 2.0825 0.2224 -2.3468 14 6 2.5951 -0.5334 -3.5744 15 1 1.9184 -1.3568 -3.8028 16 8 3.9000 -1.0499 -3.3051 17 6 2.6611 0.4197 -4.7694 18 6 1.2624 0.9715 -5.0625 19 6 1.3237 1.8597 -6.3080 20 8 1.8340 1.1038 -7.4081 21 6 3.1578 0.6040 -7.2084 22 6 3.1699 -0.3364 -6.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 0.7087 1.1615 3.4843 27 1 1.4496 -1.4980 -1.4099 28 1 2.7588 1.0460 -2.1182 29 1 1.0871 0.6162 -2.5525 30 1 4.5557 -0.3714 -3.0934 31 1 3.3377 1.2434 -4.5420 32 1 0.5745 0.1448 -5.2397 33 1 0.9167 1.5583 -4.2116 34 1 1.9792 2.7091 -6.1153 35 1 0.3231 2.2197 -6.5474 36 1 3.8374 1.4369 -7.0275 37 1 3.4786 0.0593 -8.0964 38 1 4.1871 -0.6841 -5.8198 39 1 2.5224 -1.1910 -6.1966 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380090886.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:57 Heat of formation + Delta-G solvation = -136.481301 kcal Electronic energy + Delta-G solvation = -18231.475302 eV Core-core repulsion = 15365.305630 eV Total energy + Delta-G solvation = -2866.169672 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.67595 -38.70651 -37.10599 -34.62309 -34.28896 -32.07322 -30.98936 -28.23598 -27.23798 -25.29650 -24.30267 -22.51852 -22.17535 -21.12062 -18.49063 -17.67714 -17.11308 -16.84645 -16.72788 -16.37105 -15.86713 -15.46519 -15.40362 -14.75448 -14.69225 -14.15983 -14.05746 -13.53794 -13.24869 -13.19950 -12.88106 -12.66916 -12.60506 -12.31953 -12.25599 -12.14696 -11.96652 -11.84653 -11.45900 -11.30672 -11.12586 -10.82347 -10.49663 -10.24750 -8.89539 -8.10501 -6.21358 1.41351 1.43272 1.55974 2.43932 2.98389 3.17714 3.29433 3.56188 3.79659 3.95230 4.00172 4.07709 4.22084 4.29777 4.40547 4.50997 4.56824 4.66774 4.76569 4.78132 4.81454 4.83071 4.86777 4.93982 5.06370 5.09173 5.15775 5.24291 5.39415 5.42778 5.68787 5.81044 6.27073 6.27775 6.64916 6.79201 6.92686 6.98583 7.48973 8.95104 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.047680 B = 0.004527 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.112985 B = 6183.324273 C = 6589.918258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.215 3.785 3 H 0.001 0.999 4 C -0.514 4.514 5 H 0.052 0.948 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.960 3.040 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.280 1.280 12 N -0.681 5.681 13 C 0.032 3.968 14 C 0.129 3.871 15 H 0.085 0.915 16 O -0.562 6.562 17 C -0.112 4.112 18 C -0.151 4.151 19 C 0.061 3.939 20 O -0.404 6.404 21 C 0.058 3.942 22 C -0.139 4.139 23 H 0.026 0.974 24 H 0.030 0.970 25 H 0.061 0.939 26 H 0.261 0.739 27 H 0.328 0.672 28 H 0.058 0.942 29 H 0.032 0.968 30 H 0.381 0.619 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.103 0.897 36 H 0.059 0.941 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.707 1.650 -17.635 17.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.107 3.893 3 H 0.019 0.981 4 C -0.553 4.553 5 H 0.070 0.930 6 C -0.189 4.189 7 N -0.564 5.564 8 Si 0.786 3.214 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.206 1.206 12 N -0.310 5.310 13 C -0.098 4.098 14 C 0.070 3.930 15 H 0.103 0.897 16 O -0.368 6.368 17 C -0.131 4.131 18 C -0.189 4.189 19 C -0.015 4.015 20 O -0.323 6.323 21 C -0.018 4.018 22 C -0.177 4.177 23 H 0.045 0.955 24 H 0.049 0.951 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.145 0.855 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.229 0.771 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.121 0.879 36 H 0.077 0.923 37 H 0.123 0.877 38 H 0.102 0.898 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.907 1.246 -17.620 17.901 hybrid contribution -0.531 0.449 1.344 1.513 sum 2.375 1.694 -16.276 16.535 Atomic orbital electron populations 1.22241 1.00068 0.99164 1.00088 1.18947 0.89964 0.92627 0.87785 0.98068 1.21494 1.30245 1.12359 0.91184 0.93007 1.25711 0.95473 0.95893 1.01865 1.70013 1.38120 1.24303 1.23916 0.85471 0.78081 0.78601 0.79240 1.19482 1.20624 1.20564 1.60583 1.57783 1.09252 1.03414 1.22707 0.99427 0.95927 0.91772 1.21794 0.84830 0.95419 0.90999 0.89718 1.86531 1.19709 1.38524 1.92004 1.21818 0.97771 0.98328 0.95178 1.22244 0.96816 1.00733 0.99127 1.22653 1.00355 0.92862 0.85663 1.87893 1.32047 1.71586 1.40819 1.22722 0.83600 0.96804 0.98658 1.22090 1.02719 0.98635 0.94244 0.95511 0.95092 0.92002 0.93012 0.85532 0.92340 0.94980 0.77082 0.90103 0.91521 0.90523 0.92307 0.87862 0.92265 0.87660 0.89799 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.52 8.94 71.98 0.64 -6.88 16 2 C 0.22 10.96 2.57 44.17 0.11 11.07 16 3 H 0.00 0.08 7.80 -2.39 -0.02 0.06 16 4 C -0.51 -29.03 8.84 25.60 0.23 -28.81 16 5 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 6 C 0.01 0.48 5.30 84.65 0.45 0.93 16 7 N -0.92 -53.42 11.32 21.45 0.24 -53.18 16 8 Si 0.96 44.45 29.54 68.60 2.03 46.48 16 9 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 N -0.68 -28.82 6.10 -495.45 -3.02 -31.84 16 13 C 0.03 1.05 4.80 86.30 0.41 1.46 16 14 C 0.13 3.47 2.76 30.60 0.08 3.56 16 15 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 16 O -0.56 -16.25 12.61 -148.98 -1.88 -18.13 16 17 C -0.11 -2.33 2.04 -10.67 -0.02 -2.35 16 18 C -0.15 -3.08 4.98 30.69 0.15 -2.93 16 19 C 0.06 1.12 6.84 72.02 0.49 1.61 16 20 O -0.40 -8.60 10.77 -148.98 -1.60 -10.20 16 21 C 0.06 1.00 6.84 72.01 0.49 1.49 16 22 C -0.14 -2.64 5.23 30.68 0.16 -2.48 16 23 H 0.03 1.12 7.45 -2.38 -0.02 1.10 16 24 H 0.03 1.42 8.13 -2.39 -0.02 1.40 16 25 H 0.06 3.33 6.07 -2.39 -0.01 3.32 16 26 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 27 H 0.33 13.46 8.47 -89.69 -0.76 12.70 16 28 H 0.06 2.01 8.06 -2.39 -0.02 1.99 16 29 H 0.03 1.05 5.81 -2.39 -0.01 1.03 16 30 H 0.38 8.98 9.05 -74.06 -0.67 8.31 16 31 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.08 1.61 6.63 -2.39 -0.02 1.60 16 34 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.08 1.53 7.80 -2.39 -0.02 1.51 16 39 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -63.26 307.31 -1.42 -64.68 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -0.40 Total: 25.53 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: 3.21 Total: -23.33 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -2.78 Total: -85.02 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -3.48 Total: -28.34 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -63.26 -1.42 -64.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380090886.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.799 kcal (2) G-P(sol) polarization free energy of solvation -63.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds