Wall clock time and date at job start Mon Mar 30 2020 03:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47411 * 2 1 4 4 C 1.50704 * 109.47227 * 240.00067 * 2 1 3 5 5 H 1.08001 * 119.99988 * 275.00901 * 4 2 1 6 6 C 1.37872 * 120.00019 * 95.00092 * 4 2 1 7 7 N 1.31512 * 120.00119 * 184.91539 * 6 4 2 8 8 Si 1.86802 * 120.00241 * 4.91928 * 6 4 2 9 9 H 1.48496 * 109.47292 * 84.82640 * 8 6 4 10 10 H 1.48494 * 109.47356 * 204.83087 * 8 6 4 11 11 H 1.48500 * 109.46883 * 324.82873 * 8 6 4 12 12 N 1.46902 * 109.47321 * 120.00384 * 2 1 3 13 13 C 1.46901 * 110.99816 * 274.99917 * 12 2 1 14 14 C 1.52996 * 109.47136 * 179.97438 * 13 12 2 15 15 H 1.08996 * 109.47256 * 304.99510 * 14 13 12 16 16 C 1.53002 * 109.47048 * 64.99939 * 14 13 12 17 17 O 1.42900 * 109.46840 * 184.99971 * 16 14 13 18 18 C 1.53001 * 109.47196 * 184.99776 * 14 13 12 19 19 H 1.09003 * 110.80893 * 300.70101 * 18 14 13 20 20 C 1.54814 * 110.90783 * 177.07258 * 18 14 13 21 21 C 1.54107 * 104.18745 * 220.92219 * 20 18 14 22 22 O 1.43745 * 107.29218 * 357.96967 * 21 20 18 23 23 C 1.44425 * 107.00129 * 26.48973 * 22 21 20 24 24 H 1.09007 * 109.47121 * 295.05885 * 1 2 3 25 25 H 1.08994 * 109.47628 * 175.04966 * 1 2 3 26 26 H 1.09001 * 109.46816 * 55.05111 * 1 2 3 27 27 H 0.96998 * 120.00203 * 180.02562 * 7 6 4 28 28 H 1.00898 * 111.00644 * 151.04112 * 12 2 1 29 29 H 1.09000 * 109.47342 * 299.99984 * 13 12 2 30 30 H 1.09002 * 109.47102 * 59.99657 * 13 12 2 31 31 H 1.08992 * 109.47213 * 304.99914 * 16 14 13 32 32 H 1.09002 * 109.47300 * 65.00310 * 16 14 13 33 33 H 0.96705 * 114.00010 * 180.02562 * 17 16 14 34 34 H 1.08996 * 110.48754 * 339.59792 * 20 18 14 35 35 H 1.09002 * 110.48582 * 102.24857 * 20 18 14 36 36 H 1.08997 * 109.87539 * 117.39316 * 21 20 18 37 37 H 1.08997 * 109.87456 * 238.54698 * 21 20 18 38 38 H 1.09001 * 110.65171 * 201.48034 * 23 22 21 39 39 H 1.09000 * 110.60123 * 78.46741 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1353 -1.7855 -1.2291 6 6 2.3602 0.0121 -2.3580 7 7 2.7059 -0.6131 -3.4622 8 14 2.3136 1.8791 -2.3174 9 1 3.5991 2.3948 -1.7821 10 1 2.1059 2.3991 -3.6927 11 1 1.1987 2.3275 -1.4451 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5951 -0.5333 3.5744 15 1 1.9691 -1.4081 3.7500 16 6 4.0386 -0.9792 3.3327 17 8 4.4784 -1.7838 4.4287 18 6 2.5428 0.3848 4.7972 19 1 3.1528 1.2744 4.6398 20 6 2.9860 -0.3699 6.0741 21 6 2.0027 0.1122 7.1583 22 8 1.1339 1.0806 6.5470 23 6 1.0806 0.7699 5.1376 24 1 -0.3634 0.4353 0.9310 25 1 -0.3634 -1.0237 -0.0887 26 1 -0.3633 0.5887 -0.8424 27 1 2.9370 -0.1048 -4.2553 28 1 2.9172 -1.1207 1.0287 29 1 2.7588 1.0461 2.1182 30 1 1.0871 0.6162 2.5525 31 1 4.0901 -1.5600 2.4119 32 1 4.6800 -0.1022 3.2455 33 1 5.3875 -2.1021 4.3431 34 1 2.8978 -1.4468 5.9307 35 1 4.0086 -0.1020 6.3401 36 1 1.4173 -0.7295 7.5284 37 1 2.5526 0.5732 7.9788 38 1 0.7698 1.6425 4.5631 39 1 0.4101 -0.0699 4.9551 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380141418.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:14 Heat of formation + Delta-G solvation = -109.427851 kcal Electronic energy + Delta-G solvation = -18390.205751 eV Core-core repulsion = 15525.209204 eV Total energy + Delta-G solvation = -2864.996546 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.71186 -37.42116 -35.98983 -33.89355 -32.20421 -30.66057 -29.02886 -27.60191 -25.48362 -24.31895 -22.74959 -21.35871 -19.95647 -19.64127 -17.53511 -16.88136 -16.45192 -15.89887 -15.43395 -15.03703 -14.42165 -14.15638 -13.86340 -13.59553 -13.30624 -13.06925 -12.51125 -12.33662 -12.17123 -11.72757 -11.53272 -11.39448 -11.10118 -11.01088 -10.69603 -10.56569 -10.45368 -10.40997 -10.16674 -9.84773 -9.77113 -9.65668 -9.03933 -8.64956 -7.49591 -6.16789 -4.17832 3.19852 3.29856 3.31576 3.94399 4.26386 4.32751 4.56631 4.68359 4.83759 5.07549 5.13188 5.28629 5.29511 5.36686 5.39986 5.50622 5.69189 5.74626 5.77216 5.84358 5.94187 6.02222 6.06285 6.19159 6.23428 6.38949 6.48766 6.63078 6.79152 6.85996 6.87374 7.36945 7.58123 7.65205 7.90048 8.32286 8.59887 8.92328 9.47222 10.96201 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.031643 B = 0.005578 C = 0.005153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.668966 B = 5018.373475 C = 5432.047489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.179 3.821 3 H 0.004 0.996 4 C -0.520 4.520 5 H 0.079 0.921 6 C 0.074 3.926 7 N -0.895 5.895 8 Si 0.875 3.125 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.265 1.265 12 N -0.684 5.684 13 C 0.060 3.940 14 C -0.073 4.073 15 H 0.088 0.912 16 C 0.078 3.922 17 O -0.570 6.570 18 C -0.112 4.112 19 H 0.079 0.921 20 C -0.134 4.134 21 C 0.042 3.958 22 O -0.385 6.385 23 C 0.050 3.950 24 H 0.020 0.980 25 H 0.051 0.949 26 H 0.040 0.960 27 H 0.265 0.735 28 H 0.338 0.662 29 H 0.021 0.979 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.040 0.960 33 H 0.372 0.628 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.219 1.732 17.030 17.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.071 3.929 3 H 0.021 0.979 4 C -0.558 4.558 5 H 0.098 0.902 6 C -0.129 4.129 7 N -0.533 5.533 8 Si 0.702 3.298 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.190 1.190 12 N -0.317 5.317 13 C -0.070 4.070 14 C -0.092 4.092 15 H 0.106 0.894 16 C 0.000 4.000 17 O -0.375 6.375 18 C -0.131 4.131 19 H 0.097 0.903 20 C -0.172 4.172 21 C -0.035 4.035 22 O -0.304 6.304 23 C -0.026 4.026 24 H 0.039 0.961 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.157 0.843 29 H 0.039 0.961 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.219 0.781 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.930 1.808 17.302 17.421 hybrid contribution 1.521 1.315 -0.791 2.161 sum 2.450 3.124 16.510 16.981 Atomic orbital electron populations 1.21839 0.98029 1.00741 0.97735 1.19572 0.92513 0.92456 0.88382 0.97878 1.21076 1.43751 0.95883 0.95110 0.90248 1.25027 0.94372 0.98171 0.95323 1.69898 1.45919 1.35830 1.01655 0.86898 0.78959 0.86582 0.77318 1.20399 1.21333 1.18966 1.60759 1.32953 1.32703 1.05307 1.21994 0.99904 0.94109 0.90995 1.21188 0.95519 0.98642 0.93842 0.89365 1.22250 0.95023 0.93584 0.89106 1.86509 1.34270 1.71278 1.45464 1.22699 0.96713 0.98649 0.95058 0.90265 1.22900 0.99130 1.01928 0.93247 1.23241 0.91756 0.92001 0.96486 1.88839 1.67849 1.52830 1.20889 1.23677 0.96163 1.01079 0.81700 0.96074 0.92947 0.94082 0.92524 0.84254 0.96118 0.91104 0.92529 0.94135 0.78116 0.89276 0.90971 0.92786 0.90510 0.89063 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 9.42 37.15 0.35 -2.35 16 2 C 0.18 4.13 2.26 -68.86 -0.16 3.97 16 3 H 0.00 0.08 4.95 -51.93 -0.26 -0.17 16 4 C -0.52 -14.17 8.84 -34.44 -0.30 -14.48 16 5 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 6 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 7 N -0.90 -26.72 13.96 55.43 0.77 -25.95 16 8 Si 0.87 21.12 26.99 -169.99 -4.59 16.54 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.26 -6.18 6.82 56.52 0.39 -5.80 16 12 N -0.68 -13.47 6.30 -107.95 -0.68 -14.15 16 13 C 0.06 0.97 4.85 -3.83 -0.02 0.95 16 14 C -0.07 -0.99 1.85 -90.62 -0.17 -1.15 16 15 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 16 C 0.08 0.98 6.29 37.16 0.23 1.22 16 17 O -0.57 -6.33 10.70 -35.23 -0.38 -6.70 16 18 C -0.11 -1.38 2.65 -88.61 -0.24 -1.61 16 19 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 20 C -0.13 -1.51 5.00 -25.20 -0.13 -1.64 16 21 C 0.04 0.47 7.70 37.74 0.29 0.76 16 22 O -0.38 -5.28 11.52 -35.23 -0.41 -5.69 16 23 C 0.05 0.63 6.23 38.21 0.24 0.87 16 24 H 0.02 0.39 7.36 -51.92 -0.38 0.01 16 25 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.34 6.67 6.51 -39.29 -0.26 6.41 16 29 H 0.02 0.34 8.06 -51.93 -0.42 -0.08 16 30 H 0.07 1.13 6.36 -51.93 -0.33 0.80 16 31 H 0.06 0.77 6.47 -51.93 -0.34 0.43 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.37 2.67 9.12 45.56 0.42 3.08 16 34 H 0.09 1.07 6.66 -51.93 -0.35 0.72 16 35 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.09 1.10 7.95 -51.93 -0.41 0.69 16 39 H 0.06 0.80 8.04 -51.93 -0.42 0.39 16 LS Contribution 304.00 15.07 4.58 4.58 Total: -1.00 -30.17 304.00 -6.38 -36.55 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -5.69 Total: 6.31 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: 0.01 Total: -11.49 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.09 Total: -40.10 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -0.78 Total: -12.39 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.59 Total: 16.54 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.17 -6.38 -36.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380141418.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.878 kcal (2) G-P(sol) polarization free energy of solvation -30.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds