Wall clock time and date at job start Mon Mar 30 2020 03:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47411 * 2 1 4 4 C 1.50704 * 109.47227 * 240.00067 * 2 1 3 5 5 H 1.08001 * 119.99988 * 275.00901 * 4 2 1 6 6 C 1.37872 * 120.00019 * 95.00092 * 4 2 1 7 7 N 1.31512 * 120.00119 * 184.91539 * 6 4 2 8 8 Si 1.86802 * 120.00241 * 4.91928 * 6 4 2 9 9 H 1.48496 * 109.47292 * 84.82640 * 8 6 4 10 10 H 1.48494 * 109.47356 * 204.83087 * 8 6 4 11 11 H 1.48500 * 109.46883 * 324.82873 * 8 6 4 12 12 N 1.46902 * 109.47321 * 120.00384 * 2 1 3 13 13 C 1.46901 * 110.99816 * 274.99917 * 12 2 1 14 14 C 1.52996 * 109.47136 * 179.97438 * 13 12 2 15 15 H 1.08996 * 109.47256 * 304.99510 * 14 13 12 16 16 C 1.53002 * 109.47048 * 64.99939 * 14 13 12 17 17 O 1.42900 * 109.46840 * 184.99971 * 16 14 13 18 18 C 1.53001 * 109.47196 * 184.99776 * 14 13 12 19 19 H 1.09003 * 110.80893 * 300.70101 * 18 14 13 20 20 C 1.54814 * 110.90783 * 177.07258 * 18 14 13 21 21 C 1.54107 * 104.18745 * 220.92219 * 20 18 14 22 22 O 1.43745 * 107.29218 * 357.96967 * 21 20 18 23 23 C 1.44425 * 107.00129 * 26.48973 * 22 21 20 24 24 H 1.09007 * 109.47121 * 295.05885 * 1 2 3 25 25 H 1.08994 * 109.47628 * 175.04966 * 1 2 3 26 26 H 1.09001 * 109.46816 * 55.05111 * 1 2 3 27 27 H 0.96998 * 120.00203 * 180.02562 * 7 6 4 28 28 H 1.00898 * 111.00644 * 151.04112 * 12 2 1 29 29 H 1.09000 * 109.47342 * 299.99984 * 13 12 2 30 30 H 1.09002 * 109.47102 * 59.99657 * 13 12 2 31 31 H 1.08992 * 109.47213 * 304.99914 * 16 14 13 32 32 H 1.09002 * 109.47300 * 65.00310 * 16 14 13 33 33 H 0.96705 * 114.00010 * 180.02562 * 17 16 14 34 34 H 1.08996 * 110.48754 * 339.59792 * 20 18 14 35 35 H 1.09002 * 110.48582 * 102.24857 * 20 18 14 36 36 H 1.08997 * 109.87539 * 117.39316 * 21 20 18 37 37 H 1.08997 * 109.87456 * 238.54698 * 21 20 18 38 38 H 1.09001 * 110.65171 * 201.48034 * 23 22 21 39 39 H 1.09000 * 110.60123 * 78.46741 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1353 -1.7855 -1.2291 6 6 2.3602 0.0121 -2.3580 7 7 2.7059 -0.6131 -3.4622 8 14 2.3136 1.8791 -2.3174 9 1 3.5991 2.3948 -1.7821 10 1 2.1059 2.3991 -3.6927 11 1 1.1987 2.3275 -1.4451 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5951 -0.5333 3.5744 15 1 1.9691 -1.4081 3.7500 16 6 4.0386 -0.9792 3.3327 17 8 4.4784 -1.7838 4.4287 18 6 2.5428 0.3848 4.7972 19 1 3.1528 1.2744 4.6398 20 6 2.9860 -0.3699 6.0741 21 6 2.0027 0.1122 7.1583 22 8 1.1339 1.0806 6.5470 23 6 1.0806 0.7699 5.1376 24 1 -0.3634 0.4353 0.9310 25 1 -0.3634 -1.0237 -0.0887 26 1 -0.3633 0.5887 -0.8424 27 1 2.9370 -0.1048 -4.2553 28 1 2.9172 -1.1207 1.0287 29 1 2.7588 1.0461 2.1182 30 1 1.0871 0.6162 2.5525 31 1 4.0901 -1.5600 2.4119 32 1 4.6800 -0.1022 3.2455 33 1 5.3875 -2.1021 4.3431 34 1 2.8978 -1.4468 5.9307 35 1 4.0086 -0.1020 6.3401 36 1 1.4173 -0.7295 7.5284 37 1 2.5526 0.5732 7.9788 38 1 0.7698 1.6425 4.5631 39 1 0.4101 -0.0699 4.9551 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380141418.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:13 Heat of formation + Delta-G solvation = -133.205103 kcal Electronic energy + Delta-G solvation = -18391.236810 eV Core-core repulsion = 15525.209204 eV Total energy + Delta-G solvation = -2866.027605 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.70301 -38.57680 -37.34517 -35.25937 -34.01251 -31.95044 -30.24428 -28.76727 -27.37417 -25.70253 -23.70995 -22.47851 -21.46666 -20.94154 -19.16858 -18.28210 -17.42566 -17.04316 -16.72441 -16.30091 -15.76175 -15.46569 -15.27825 -14.87208 -14.64397 -14.38835 -14.22657 -13.78968 -13.21375 -13.03195 -12.94222 -12.75643 -12.55768 -12.53103 -12.30820 -11.96932 -11.85154 -11.59990 -11.45411 -11.34340 -11.02733 -10.78110 -10.71051 -10.59924 -9.09217 -8.32328 -6.38018 1.30623 1.33978 1.44035 2.30683 2.97733 3.03846 3.34305 3.50096 3.60384 3.86169 3.98479 4.22060 4.26127 4.38888 4.42861 4.48645 4.52864 4.61795 4.68636 4.79435 4.86168 4.88545 4.90153 4.96217 4.98677 5.03313 5.11256 5.23328 5.29360 5.42632 5.50892 5.70215 5.94779 6.03394 6.52465 6.68156 6.84324 6.94218 7.31695 8.84345 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.031643 B = 0.005578 C = 0.005153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.668966 B = 5018.373475 C = 5432.047489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.181 3.819 3 H 0.005 0.995 4 C -0.521 4.521 5 H 0.037 0.963 6 C 0.018 3.982 7 N -0.944 5.944 8 Si 0.939 3.061 9 H -0.268 1.268 10 H -0.286 1.286 11 H -0.247 1.247 12 N -0.688 5.688 13 C 0.062 3.938 14 C -0.063 4.063 15 H 0.076 0.924 16 C 0.083 3.917 17 O -0.574 6.574 18 C -0.107 4.107 19 H 0.082 0.918 20 C -0.126 4.126 21 C 0.038 3.962 22 O -0.404 6.404 23 C 0.048 3.952 24 H 0.050 0.950 25 H 0.041 0.959 26 H 0.035 0.965 27 H 0.267 0.733 28 H 0.336 0.664 29 H 0.023 0.977 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.391 0.609 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.321 3.303 18.905 19.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.072 3.928 3 H 0.023 0.977 4 C -0.560 4.560 5 H 0.055 0.945 6 C -0.181 4.181 7 N -0.584 5.584 8 Si 0.763 3.237 9 H -0.193 1.193 10 H -0.213 1.213 11 H -0.171 1.171 12 N -0.320 5.320 13 C -0.068 4.068 14 C -0.082 4.082 15 H 0.095 0.905 16 C 0.005 3.995 17 O -0.382 6.382 18 C -0.126 4.126 19 H 0.101 0.899 20 C -0.164 4.164 21 C -0.038 4.038 22 O -0.323 6.323 23 C -0.028 4.028 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.155 0.845 29 H 0.041 0.959 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.240 0.760 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.039 3.366 19.211 19.531 hybrid contribution 1.511 0.701 -1.315 2.122 sum 2.550 4.067 17.896 18.529 Atomic orbital electron populations 1.21756 0.96812 1.00361 0.99091 1.19458 0.93422 0.92003 0.87867 0.97746 1.21289 1.43339 0.94233 0.97133 0.94506 1.25863 0.94118 1.03317 0.94760 1.70045 1.47805 1.37944 1.02604 0.85863 0.79876 0.80319 0.77629 1.19288 1.21258 1.17110 1.60668 1.32968 1.33301 1.05066 1.22060 1.00544 0.93771 0.90418 1.21023 0.95859 0.98148 0.93184 0.90518 1.22091 0.94664 0.93866 0.88912 1.86465 1.35980 1.71102 1.44640 1.22635 0.96748 0.98493 0.94771 0.89934 1.22814 0.99600 1.01284 0.92658 1.23395 0.91676 0.92052 0.96724 1.88821 1.68496 1.53684 1.21333 1.23717 0.96283 1.01258 0.81562 0.93125 0.93964 0.94556 0.92420 0.84534 0.95860 0.90518 0.94016 0.93312 0.75981 0.89962 0.90129 0.92120 0.88931 0.88598 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 9.42 71.98 0.68 -4.39 16 2 C 0.18 8.18 2.26 44.17 0.10 8.28 16 3 H 0.00 0.22 4.95 -2.39 -0.01 0.21 16 4 C -0.52 -28.89 8.84 25.60 0.23 -28.66 16 5 H 0.04 2.30 8.06 -2.91 -0.02 2.27 16 6 C 0.02 1.00 5.47 84.65 0.46 1.46 16 7 N -0.94 -57.65 13.96 21.45 0.30 -57.35 16 8 Si 0.94 42.93 26.99 68.60 1.85 44.79 16 9 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 10 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.25 -10.54 6.82 99.48 0.68 -9.86 16 12 N -0.69 -26.47 6.30 -495.45 -3.12 -29.60 16 13 C 0.06 1.86 4.85 86.30 0.42 2.28 16 14 C -0.06 -1.60 1.85 -10.79 -0.02 -1.62 16 15 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 16 C 0.08 1.94 6.29 71.98 0.45 2.40 16 17 O -0.57 -11.54 10.70 -148.98 -1.59 -13.13 16 18 C -0.11 -2.39 2.65 -9.49 -0.03 -2.41 16 19 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 20 C -0.13 -2.53 5.00 31.59 0.16 -2.37 16 21 C 0.04 0.76 7.70 72.36 0.56 1.31 16 22 O -0.40 -10.22 11.52 -148.98 -1.72 -11.94 16 23 C 0.05 1.11 6.23 72.67 0.45 1.57 16 24 H 0.05 1.79 7.36 -2.38 -0.02 1.77 16 25 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 28 H 0.34 13.23 6.51 -89.70 -0.58 12.64 16 29 H 0.02 0.71 8.06 -2.39 -0.02 0.69 16 30 H 0.08 2.23 6.36 -2.39 -0.02 2.22 16 31 H 0.04 1.10 6.47 -2.39 -0.02 1.09 16 32 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.39 4.72 9.12 -74.05 -0.68 4.04 16 34 H 0.08 1.79 6.66 -2.39 -0.02 1.77 16 35 H 0.08 1.49 8.11 -2.39 -0.02 1.47 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.10 2.10 7.95 -2.39 -0.02 2.08 16 39 H 0.06 1.45 8.04 -2.39 -0.02 1.43 16 Total: -1.00 -64.46 304.00 -1.07 -65.53 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: -0.25 Total: 23.85 kcal Atomic # 6 Polarization: -25.61 SS G_CDS: 3.46 Total: -22.15 kcal Atomic # 7 Polarization: -84.12 SS G_CDS: -2.82 Total: -86.94 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -3.31 Total: -25.07 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.85 Total: 44.79 kcal Total: -64.46 -1.07 -65.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380141418.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.678 kcal (2) G-P(sol) polarization free energy of solvation -64.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds