Wall clock time and date at job start Mon Mar 30 2020 03:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1 7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47510 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47309 * 119.99914 * 8 6 4 11 11 H 1.48500 * 109.46790 * 239.99791 * 8 6 4 12 12 N 1.46902 * 109.46626 * 120.00063 * 2 1 3 13 13 C 1.46904 * 110.99949 * 274.99434 * 12 2 1 14 14 C 1.52997 * 109.47280 * 180.02562 * 13 12 2 15 15 H 1.09006 * 109.47270 * 305.00554 * 14 13 12 16 16 C 1.53000 * 109.47207 * 65.00229 * 14 13 12 17 17 O 1.42895 * 109.47335 * 185.00348 * 16 14 13 18 18 C 1.53000 * 109.47223 * 185.00519 * 14 13 12 19 19 H 1.08994 * 110.74791 * 299.29860 * 18 14 13 20 20 C 1.55308 * 110.84816 * 62.77210 * 18 14 13 21 21 C 1.55205 * 100.82618 * 152.18186 * 20 18 14 22 22 O 1.43649 * 105.25897 * 323.81627 * 21 20 18 23 23 C 1.43238 * 109.97219 * 24.28107 * 22 21 20 24 24 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 27 27 H 0.97001 * 120.00306 * 180.02562 * 7 6 4 28 28 H 1.00896 * 111.00544 * 38.95527 * 12 2 1 29 29 H 1.09002 * 109.47300 * 300.00868 * 13 12 2 30 30 H 1.09006 * 109.46967 * 60.00497 * 13 12 2 31 31 H 1.08998 * 109.47028 * 305.00307 * 16 14 13 32 32 H 1.08997 * 109.46976 * 64.99946 * 16 14 13 33 33 H 0.96702 * 114.00005 * 180.02562 * 17 16 14 34 34 H 1.09003 * 111.12119 * 270.24133 * 20 18 14 35 35 H 1.08995 * 111.12602 * 34.40128 * 20 18 14 36 36 H 1.08999 * 110.37016 * 204.80351 * 21 20 18 37 37 H 1.09002 * 110.21552 * 82.74639 * 21 20 18 38 38 H 1.08999 * 109.83519 * 238.77283 * 23 22 21 39 39 H 1.09008 * 109.82578 * 117.80293 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 3.1484 -2.2857 -3.6037 10 1 1.1679 -1.5867 -4.8165 11 1 3.1474 -0.1858 -4.8159 12 7 2.0196 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 6 2.5961 -0.5328 3.5742 15 1 1.9708 -1.4082 3.7501 16 6 4.0398 -0.9778 3.3320 17 8 4.4806 -1.7822 4.4277 18 6 2.5438 0.3853 4.7970 19 1 3.1728 1.2628 4.6482 20 6 1.0813 0.8008 5.1141 21 6 1.1714 1.0395 6.6450 22 8 2.0845 0.0423 7.1300 23 6 2.9572 -0.3769 6.0744 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.7083 1.1609 -3.4845 28 1 1.4495 -1.4979 1.4101 29 1 2.7589 1.0462 2.1182 30 1 1.0871 0.6164 2.5526 31 1 4.0912 -1.5587 2.4111 32 1 4.6805 -0.1005 3.2444 33 1 5.3898 -2.1000 4.3415 34 1 0.8094 1.7148 4.5861 35 1 0.3851 -0.0056 4.8838 36 1 0.1924 0.9127 7.1071 37 1 1.5588 2.0379 6.8484 38 1 2.8549 -1.4501 5.9141 39 1 3.9892 -0.1368 6.3305 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380141425.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:19 Heat of formation + Delta-G solvation = -110.103301 kcal Electronic energy + Delta-G solvation = -18304.198123 eV Core-core repulsion = 15439.172287 eV Total energy + Delta-G solvation = -2865.025836 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.64862 -37.25069 -35.92571 -33.94473 -32.14123 -30.30175 -28.87610 -27.10075 -25.22222 -24.38851 -22.08546 -21.75308 -20.32411 -19.79482 -17.27557 -16.48096 -16.18850 -15.94964 -14.87403 -14.78724 -14.63818 -14.26209 -13.77194 -13.35990 -13.18593 -12.90049 -12.38637 -12.06438 -11.94890 -11.68640 -11.43487 -11.10831 -11.01262 -10.82697 -10.77715 -10.61435 -10.44035 -10.26406 -10.13757 -9.83083 -9.69354 -9.39723 -9.01501 -8.39218 -7.27349 -6.01199 -4.04561 3.29499 3.37445 3.42418 3.95535 4.38495 4.40306 4.51118 4.69782 4.96425 5.18598 5.27724 5.30637 5.36713 5.50588 5.56738 5.60563 5.72987 5.79874 5.90833 5.94264 5.99641 6.07787 6.20782 6.29064 6.37051 6.52905 6.66162 6.81299 7.06636 7.08578 7.32707 7.70972 7.78182 7.85500 8.24088 8.49061 8.58079 9.02975 9.61095 11.05872 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.037294 B = 0.004986 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.608163 B = 5614.451980 C = 6207.421510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.032 0.968 4 C -0.494 4.494 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.685 5.685 13 C 0.065 3.935 14 C -0.070 4.070 15 H 0.075 0.925 16 C 0.083 3.917 17 O -0.579 6.579 18 C -0.113 4.113 19 H 0.080 0.920 20 C -0.153 4.153 21 C 0.051 3.949 22 O -0.395 6.395 23 C 0.068 3.932 24 H 0.088 0.912 25 H 0.027 0.973 26 H 0.004 0.996 27 H 0.259 0.741 28 H 0.325 0.675 29 H 0.065 0.935 30 H 0.027 0.973 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.373 0.627 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.883 -0.387 14.035 14.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.212 1.212 12 N -0.314 5.314 13 C -0.065 4.065 14 C -0.089 4.089 15 H 0.094 0.906 16 C 0.006 3.994 17 O -0.385 6.385 18 C -0.132 4.132 19 H 0.098 0.902 20 C -0.190 4.190 21 C -0.025 4.025 22 O -0.315 6.315 23 C -0.008 4.008 24 H 0.107 0.893 25 H 0.047 0.953 26 H 0.023 0.977 27 H 0.069 0.931 28 H 0.142 0.858 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.220 0.780 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.881 -0.135 14.129 14.420 hybrid contribution -0.169 -0.167 -1.245 1.268 sum 2.712 -0.302 12.884 13.169 Atomic orbital electron populations 1.22426 1.00725 0.99193 1.00449 1.19171 0.89599 0.94368 0.86529 0.94969 1.21192 1.30134 1.12379 0.89598 0.91924 1.24959 0.95344 0.95203 0.99080 1.69892 1.37365 1.23267 1.23244 0.86460 0.78519 0.79643 0.82875 1.19750 1.21204 1.21161 1.60826 1.58060 1.09064 1.03468 1.21887 0.98651 0.95825 0.90111 1.21157 0.96124 0.97886 0.93771 0.90622 1.22209 0.94233 0.93807 0.89194 1.86445 1.34289 1.71549 1.46191 1.22709 0.96190 0.98764 0.95511 0.90175 1.23384 0.97196 1.02692 0.95748 1.23364 0.93577 0.91961 0.93640 1.88368 1.48883 1.58268 1.35982 1.23192 0.93080 0.99634 0.84941 0.89290 0.95344 0.97682 0.93125 0.85850 0.91701 0.95487 0.91236 0.94224 0.78042 0.89893 0.90318 0.90200 0.92613 0.89952 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.98 8.94 37.16 0.33 -3.65 16 2 C 0.21 5.16 2.57 -68.86 -0.18 4.98 16 3 H 0.03 0.87 7.80 -51.93 -0.40 0.46 16 4 C -0.49 -13.42 8.84 -34.44 -0.30 -13.72 16 5 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 6 C 0.05 1.49 5.30 -17.82 -0.09 1.40 16 7 N -0.90 -25.43 11.32 55.43 0.63 -24.80 16 8 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 N -0.68 -13.76 5.60 -107.94 -0.60 -14.37 16 13 C 0.07 1.09 4.76 -3.82 -0.02 1.07 16 14 C -0.07 -0.99 1.77 -90.62 -0.16 -1.15 16 15 H 0.08 1.12 8.12 -51.93 -0.42 0.70 16 16 C 0.08 1.12 6.36 37.16 0.24 1.36 16 17 O -0.58 -6.95 10.75 -35.23 -0.38 -7.33 16 18 C -0.11 -1.43 2.52 -88.67 -0.22 -1.65 16 19 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 20 C -0.15 -1.80 5.56 -24.34 -0.14 -1.94 16 21 C 0.05 0.59 7.78 38.33 0.30 0.88 16 22 O -0.40 -5.61 11.36 -35.23 -0.40 -6.01 16 23 C 0.07 0.89 5.86 37.88 0.22 1.12 16 24 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 25 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 26 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.33 6.32 8.47 -39.29 -0.33 5.99 16 29 H 0.06 1.13 8.06 -51.93 -0.42 0.71 16 30 H 0.03 0.45 6.46 -51.93 -0.34 0.12 16 31 H 0.07 1.06 7.62 -51.93 -0.40 0.66 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.37 2.97 9.12 45.56 0.42 3.39 16 34 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 35 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 1.17 6.66 -51.93 -0.35 0.82 16 39 H 0.06 0.82 8.05 -51.92 -0.42 0.40 16 LS Contribution 306.97 15.07 4.63 4.63 Total: -1.00 -29.17 306.97 -7.03 -36.20 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -5.85 Total: 6.76 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -0.02 Total: -11.30 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.02 Total: -39.17 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.78 Total: -13.34 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.17 -7.03 -36.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380141425.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.899 kcal (2) G-P(sol) polarization free energy of solvation -29.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds