Wall clock time and date at job start Mon Mar 30 2020 03:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1 7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47510 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47309 * 119.99914 * 8 6 4 11 11 H 1.48500 * 109.46790 * 239.99791 * 8 6 4 12 12 N 1.46902 * 109.46626 * 120.00063 * 2 1 3 13 13 C 1.46904 * 110.99949 * 274.99434 * 12 2 1 14 14 C 1.52997 * 109.47280 * 180.02562 * 13 12 2 15 15 H 1.09006 * 109.47270 * 305.00554 * 14 13 12 16 16 C 1.53000 * 109.47207 * 65.00229 * 14 13 12 17 17 O 1.42895 * 109.47335 * 185.00348 * 16 14 13 18 18 C 1.53000 * 109.47223 * 185.00519 * 14 13 12 19 19 H 1.08994 * 110.74791 * 299.29860 * 18 14 13 20 20 C 1.55308 * 110.84816 * 62.77210 * 18 14 13 21 21 C 1.55205 * 100.82618 * 152.18186 * 20 18 14 22 22 O 1.43649 * 105.25897 * 323.81627 * 21 20 18 23 23 C 1.43238 * 109.97219 * 24.28107 * 22 21 20 24 24 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 27 27 H 0.97001 * 120.00306 * 180.02562 * 7 6 4 28 28 H 1.00896 * 111.00544 * 38.95527 * 12 2 1 29 29 H 1.09002 * 109.47300 * 300.00868 * 13 12 2 30 30 H 1.09006 * 109.46967 * 60.00497 * 13 12 2 31 31 H 1.08998 * 109.47028 * 305.00307 * 16 14 13 32 32 H 1.08997 * 109.46976 * 64.99946 * 16 14 13 33 33 H 0.96702 * 114.00005 * 180.02562 * 17 16 14 34 34 H 1.09003 * 111.12119 * 270.24133 * 20 18 14 35 35 H 1.08995 * 111.12602 * 34.40128 * 20 18 14 36 36 H 1.08999 * 110.37016 * 204.80351 * 21 20 18 37 37 H 1.09002 * 110.21552 * 82.74639 * 21 20 18 38 38 H 1.08999 * 109.83519 * 238.77283 * 23 22 21 39 39 H 1.09008 * 109.82578 * 117.80293 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 3.1484 -2.2857 -3.6037 10 1 1.1679 -1.5867 -4.8165 11 1 3.1474 -0.1858 -4.8159 12 7 2.0196 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 6 2.5961 -0.5328 3.5742 15 1 1.9708 -1.4082 3.7501 16 6 4.0398 -0.9778 3.3320 17 8 4.4806 -1.7822 4.4277 18 6 2.5438 0.3853 4.7970 19 1 3.1728 1.2628 4.6482 20 6 1.0813 0.8008 5.1141 21 6 1.1714 1.0395 6.6450 22 8 2.0845 0.0423 7.1300 23 6 2.9572 -0.3769 6.0744 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.7083 1.1609 -3.4845 28 1 1.4495 -1.4979 1.4101 29 1 2.7589 1.0462 2.1182 30 1 1.0871 0.6164 2.5526 31 1 4.0912 -1.5587 2.4111 32 1 4.6805 -0.1005 3.2444 33 1 5.3898 -2.1000 4.3415 34 1 0.8094 1.7148 4.5861 35 1 0.3851 -0.0056 4.8838 36 1 0.1924 0.9127 7.1071 37 1 1.5588 2.0379 6.8484 38 1 2.8549 -1.4501 5.9141 39 1 3.9892 -0.1368 6.3305 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380141425.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:19 Heat of formation + Delta-G solvation = -131.780710 kcal Electronic energy + Delta-G solvation = -18305.138126 eV Core-core repulsion = 15439.172287 eV Total energy + Delta-G solvation = -2865.965839 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.69392 -38.48420 -37.35571 -35.37257 -33.86755 -31.51135 -30.22263 -28.45101 -27.24498 -25.72739 -23.17551 -22.86533 -22.09246 -21.00732 -18.56096 -17.98395 -17.44223 -17.05810 -16.63654 -16.19215 -15.79693 -15.42719 -15.16593 -14.93618 -14.50518 -14.17532 -13.64437 -13.55298 -13.42722 -13.14278 -12.87114 -12.68215 -12.58390 -12.45196 -12.17202 -12.11177 -11.96785 -11.64694 -11.50294 -11.38604 -10.97618 -10.73966 -10.48297 -10.40356 -8.93955 -8.09105 -6.19852 1.42296 1.44649 1.56347 2.44626 2.99515 3.19669 3.36254 3.38204 3.64043 3.89373 4.05689 4.24257 4.36396 4.39284 4.44833 4.49388 4.61566 4.70345 4.77716 4.83563 4.86981 4.88261 4.93643 5.00846 5.05745 5.12803 5.18374 5.24327 5.39300 5.43809 5.70618 5.82919 6.11115 6.28260 6.64883 6.82713 6.95631 6.99163 7.50392 8.96542 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.037294 B = 0.004986 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.608163 B = 5614.451980 C = 6207.421510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.216 3.784 3 H 0.003 0.997 4 C -0.512 4.512 5 H 0.055 0.945 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.959 3.041 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.685 5.685 13 C 0.071 3.929 14 C -0.060 4.060 15 H 0.069 0.931 16 C 0.090 3.910 17 O -0.583 6.583 18 C -0.108 4.108 19 H 0.086 0.914 20 C -0.152 4.152 21 C 0.049 3.951 22 O -0.415 6.415 23 C 0.073 3.927 24 H 0.060 0.940 25 H 0.031 0.969 26 H 0.025 0.975 27 H 0.260 0.740 28 H 0.330 0.670 29 H 0.057 0.943 30 H 0.030 0.970 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.392 0.608 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.187 -0.641 14.730 15.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.107 3.893 3 H 0.021 0.979 4 C -0.551 4.551 5 H 0.073 0.927 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.785 3.215 9 H -0.193 1.193 10 H -0.208 1.208 11 H -0.209 1.209 12 N -0.314 5.314 13 C -0.058 4.058 14 C -0.079 4.079 15 H 0.088 0.912 16 C 0.012 3.988 17 O -0.391 6.391 18 C -0.127 4.127 19 H 0.105 0.895 20 C -0.189 4.189 21 C -0.027 4.027 22 O -0.335 6.335 23 C -0.003 4.003 24 H 0.079 0.921 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.147 0.853 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.241 0.759 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.201 -0.400 14.844 15.190 hybrid contribution -0.249 -0.085 -1.398 1.422 sum 2.952 -0.486 13.446 13.775 Atomic orbital electron populations 1.22240 1.00112 0.99193 1.00052 1.18925 0.89943 0.92741 0.87651 0.97946 1.21489 1.30204 1.12345 0.91036 0.92677 1.25704 0.95522 0.95873 1.01880 1.70013 1.38157 1.24356 1.23867 0.85489 0.78023 0.78615 0.79353 1.19279 1.20770 1.20850 1.60672 1.57750 1.09511 1.03490 1.21867 0.98804 0.95317 0.89848 1.20997 0.96333 0.97597 0.93019 0.91214 1.22005 0.94067 0.93885 0.88795 1.86407 1.36030 1.71343 1.45326 1.22649 0.97079 0.98512 0.94490 0.89529 1.23386 0.96368 1.02887 0.96274 1.23527 0.93949 0.92021 0.93243 1.88347 1.49465 1.59092 1.36611 1.23093 0.93244 0.98998 0.84929 0.92108 0.95016 0.95553 0.93074 0.85269 0.92461 0.95179 0.93210 0.93651 0.75865 0.89065 0.90801 0.88774 0.91288 0.91047 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.36 8.94 71.98 0.64 -6.72 16 2 C 0.22 10.62 2.57 44.17 0.11 10.73 16 3 H 0.00 0.14 7.80 -2.39 -0.02 0.12 16 4 C -0.51 -27.91 8.84 25.60 0.23 -27.69 16 5 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 6 C 0.01 0.45 5.30 84.66 0.45 0.90 16 7 N -0.92 -52.69 11.32 21.45 0.24 -52.44 16 8 Si 0.96 43.49 29.54 68.60 2.03 45.51 16 9 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 N -0.68 -27.29 5.60 -495.42 -2.78 -30.07 16 13 C 0.07 2.32 4.76 86.30 0.41 2.73 16 14 C -0.06 -1.62 1.77 -10.79 -0.02 -1.64 16 15 H 0.07 1.98 8.12 -2.38 -0.02 1.96 16 16 C 0.09 2.33 6.36 71.98 0.46 2.79 16 17 O -0.58 -13.02 10.75 -148.98 -1.60 -14.62 16 18 C -0.11 -2.55 2.52 -9.53 -0.02 -2.58 16 19 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 20 C -0.15 -3.29 5.56 32.14 0.18 -3.11 16 21 C 0.05 1.01 7.78 72.74 0.57 1.57 16 22 O -0.41 -11.04 11.36 -148.98 -1.69 -12.74 16 23 C 0.07 1.82 5.86 72.45 0.42 2.25 16 24 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 25 H 0.03 1.42 8.13 -2.39 -0.02 1.40 16 26 H 0.03 1.08 7.45 -2.39 -0.02 1.06 16 27 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 28 H 0.33 12.62 8.47 -89.70 -0.76 11.86 16 29 H 0.06 1.96 8.06 -2.39 -0.02 1.94 16 30 H 0.03 0.97 6.46 -2.38 -0.02 0.96 16 31 H 0.05 1.49 7.62 -2.39 -0.02 1.47 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.39 5.49 9.12 -74.06 -0.68 4.81 16 34 H 0.09 1.83 8.08 -2.39 -0.02 1.81 16 35 H 0.07 1.68 8.04 -2.39 -0.02 1.66 16 36 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.93 6.66 -2.39 -0.02 1.92 16 39 H 0.07 1.62 8.05 -2.38 -0.02 1.61 16 Total: -1.00 -61.17 306.97 -0.77 -61.94 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: -0.40 Total: 23.18 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: 3.43 Total: -20.76 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -2.53 Total: -82.51 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -3.29 Total: -27.36 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -61.17 -0.77 -61.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380141425.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.839 kcal (2) G-P(sol) polarization free energy of solvation -61.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds