Wall clock time and date at job start Mon Mar 30 2020 04:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.08999 * 109.52064 * 330.00036 * 3 2 1 5 5 C 1.53089 * 109.51997 * 90.12470 * 3 2 1 6 6 O 1.42901 * 109.41398 * 62.30166 * 5 3 2 7 7 C 1.42906 * 114.10046 * 61.15281 * 6 5 3 8 8 C 1.53095 * 109.41563 * 298.84244 * 7 6 5 9 9 C 1.53175 * 109.52046 * 209.87627 * 3 2 1 10 10 H 1.09007 * 109.54315 * 177.20674 * 9 3 2 11 11 N 1.46905 * 109.54603 * 56.94291 * 9 3 2 12 12 C 1.46898 * 110.99837 * 154.99767 * 11 9 3 13 13 C 1.53000 * 109.46907 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47156 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.47049 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99909 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00035 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00320 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99923 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47552 * 90.00237 * 19 17 15 21 21 H 1.48505 * 109.47233 * 210.00210 * 19 17 15 22 22 H 1.48497 * 109.47172 * 329.99967 * 19 17 15 23 23 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 25 25 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 26 26 H 1.08997 * 109.47421 * 182.27704 * 5 3 2 27 27 H 1.08995 * 109.48526 * 302.31399 * 5 3 2 28 28 H 1.08999 * 109.47851 * 58.82350 * 7 6 5 29 29 H 1.09000 * 109.48121 * 178.84637 * 7 6 5 30 30 H 1.08997 * 109.52044 * 177.50986 * 8 7 6 31 31 H 1.09000 * 109.52124 * 297.70063 * 8 7 6 32 32 H 1.00906 * 110.99685 * 31.04539 * 11 9 3 33 33 H 1.09003 * 109.47310 * 299.99742 * 12 11 9 34 34 H 1.08996 * 109.47271 * 59.99866 * 12 11 9 35 35 H 1.09003 * 109.46748 * 299.99871 * 13 12 11 36 36 H 1.08996 * 109.47440 * 59.99754 * 13 12 11 37 37 H 1.09003 * 109.47077 * 299.99535 * 14 13 12 38 38 H 1.08996 * 109.46950 * 59.99960 * 14 13 12 39 39 H 0.96999 * 120.00597 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3457 2.0001 -0.5137 5 6 2.2213 1.7715 1.4429 6 8 3.1371 0.8910 2.0973 7 6 4.4336 0.8471 1.4980 8 6 4.3115 0.3438 0.0572 9 6 3.3621 1.2638 -0.7192 10 1 3.7829 2.2684 -0.7630 11 7 3.1782 0.7463 -2.0817 12 6 4.2453 1.2201 -2.9732 13 6 4.0198 0.6622 -4.3799 14 6 5.1315 1.1551 -5.3083 15 6 4.9097 0.6051 -6.6938 16 1 4.0609 -0.0325 -6.8921 17 6 5.7903 0.9160 -7.7081 18 7 5.5970 0.4357 -8.9170 19 14 7.2580 2.0195 -7.3652 20 1 8.4165 1.1880 -6.9507 21 1 7.6064 2.7762 -8.5946 22 1 6.9179 2.9718 -6.2776 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 2.6270 2.7831 1.4424 27 1 1.2678 1.7623 1.9710 28 1 4.8683 1.8467 1.4982 29 1 5.0739 0.1721 2.0659 30 1 5.2935 0.3515 -0.4157 31 1 3.9146 -0.6713 0.0584 32 1 2.2690 0.9936 -2.4427 33 1 4.2325 2.3095 -3.0084 34 1 5.2103 0.8801 -2.5975 35 1 4.0323 -0.4272 -4.3450 36 1 3.0548 1.0026 -4.7554 37 1 5.1194 2.2445 -5.3433 38 1 6.0963 0.8143 -4.9327 39 1 6.2164 0.6547 -9.6307 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380250377.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:47 Heat of formation + Delta-G solvation = -101.635212 kcal Electronic energy + Delta-G solvation = -18003.340497 eV Core-core repulsion = 15138.681864 eV Total energy + Delta-G solvation = -2864.658632 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.05596 -37.10477 -36.41006 -33.82233 -32.10088 -30.80032 -30.13729 -26.73051 -26.61861 -23.83185 -23.65117 -21.84330 -20.38674 -19.85743 -16.87987 -16.72148 -16.64844 -16.22457 -15.71191 -15.38507 -14.72686 -14.41387 -14.19145 -13.93451 -13.60414 -13.17902 -12.96219 -12.53872 -12.46263 -12.01628 -11.74591 -11.48441 -11.38243 -10.97938 -10.90561 -10.73307 -10.60355 -10.19573 -9.95189 -9.71767 -9.63887 -9.24264 -9.14112 -8.52012 -8.22401 -6.02213 -3.99911 3.31445 3.38446 3.41849 3.47019 3.79284 4.18589 4.42908 4.46599 4.66838 4.72532 5.00894 5.06367 5.15722 5.19341 5.24915 5.31613 5.31744 5.38279 5.45647 5.57998 5.66545 5.69859 5.80636 5.89586 6.17218 6.34448 6.56719 6.58729 6.88688 6.93419 7.13615 7.25162 7.36466 7.45593 7.57473 7.82259 8.57229 9.03497 9.60395 11.11440 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.037924 B = 0.004284 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.132683 B = 6534.843198 C = 7036.708237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.053 3.947 4 H 0.066 0.934 5 C 0.043 3.957 6 O -0.372 6.372 7 C 0.060 3.940 8 C -0.140 4.140 9 C 0.090 3.910 10 H 0.052 0.948 11 N -0.674 5.674 12 C 0.056 3.944 13 C -0.099 4.099 14 C -0.013 4.013 15 C -0.518 4.518 16 H 0.072 0.928 17 C 0.065 3.935 18 N -0.905 5.905 19 Si 0.881 3.119 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.267 1.267 23 H 0.086 0.914 24 H 0.040 0.960 25 H 0.035 0.965 26 H 0.057 0.943 27 H 0.094 0.906 28 H 0.046 0.954 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.339 0.661 33 H 0.022 0.978 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.012 0.988 38 H 0.011 0.989 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.074 4.110 21.893 23.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C -0.006 4.006 4 H 0.084 0.916 5 C -0.035 4.035 6 O -0.291 6.291 7 C -0.017 4.017 8 C -0.179 4.179 9 C -0.020 4.020 10 H 0.070 0.930 11 N -0.305 5.305 12 C -0.072 4.072 13 C -0.137 4.137 14 C -0.051 4.051 15 C -0.557 4.557 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.544 5.544 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.192 1.192 23 H 0.105 0.895 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.112 0.888 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.157 0.843 33 H 0.040 0.960 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.031 0.969 38 H 0.029 0.971 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.627 3.232 21.995 23.198 hybrid contribution 0.396 1.935 -0.444 2.025 sum -6.231 5.167 21.551 23.021 Atomic orbital electron populations 1.22808 0.81728 1.02880 0.99379 1.88088 1.18726 1.25582 1.94734 1.22983 0.95253 0.86375 0.95994 0.91589 1.23037 0.94400 0.92958 0.93083 1.87943 1.22221 1.65416 1.53497 1.22654 0.84635 1.00436 0.93973 1.22162 0.99851 1.01642 0.94198 1.21651 0.93673 0.96639 0.90081 0.93039 1.60429 1.06107 1.63391 1.00602 1.22231 0.94556 0.96393 0.94070 1.21433 0.99922 1.00938 0.91380 1.19544 0.94016 0.96093 0.95414 1.21157 1.11849 1.30638 0.92007 0.91025 1.25040 0.97786 0.95765 0.94986 1.69917 1.37716 1.45452 1.01322 0.86765 0.83313 0.81358 0.77738 1.20275 1.21435 1.19156 0.89533 0.94133 0.94607 0.92471 0.88804 0.93584 0.88627 0.90915 0.89341 0.84298 0.95986 0.91450 0.91854 0.93101 0.96927 0.97060 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.82 101.05 1.09 1.35 16 2 O -0.35 -4.37 9.57 -42.73 -0.41 -4.78 16 3 C 0.05 0.57 2.29 -26.59 -0.06 0.51 16 4 H 0.07 0.61 7.79 -51.93 -0.40 0.20 16 5 C 0.04 0.41 6.49 37.20 0.24 0.66 16 6 O -0.37 -4.41 10.70 -42.73 -0.46 -4.87 16 7 C 0.06 0.62 6.84 37.21 0.25 0.88 16 8 C -0.14 -1.70 5.48 -26.52 -0.15 -1.84 16 9 C 0.09 1.09 2.37 -67.46 -0.16 0.93 16 10 H 0.05 0.60 7.80 -51.93 -0.41 0.19 16 11 N -0.67 -9.76 6.13 -106.46 -0.65 -10.41 16 12 C 0.06 0.92 5.49 -3.83 -0.02 0.90 16 13 C -0.10 -1.99 5.41 -26.73 -0.14 -2.14 16 14 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 15 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 16 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 17 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 18 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 19 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 23 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.04 0.33 8.09 -51.93 -0.42 -0.09 16 25 H 0.04 0.27 7.85 -51.93 -0.41 -0.14 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.09 0.77 7.84 -51.93 -0.41 0.36 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.88 7.59 -51.93 -0.39 0.48 16 31 H 0.09 1.25 7.83 -51.93 -0.41 0.85 16 32 H 0.34 4.68 8.36 -39.29 -0.33 4.35 16 33 H 0.02 0.35 8.06 -51.93 -0.42 -0.07 16 34 H 0.07 1.11 7.55 -51.93 -0.39 0.72 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 38 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 39 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 311.62 15.07 4.70 4.70 Total: -1.00 -32.30 311.62 -7.08 -39.38 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -6.87 Total: -1.01 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 0.51 Total: -12.77 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.12 Total: -37.96 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.87 Total: -9.65 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.30 -7.08 -39.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380250377.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.258 kcal (2) G-P(sol) polarization free energy of solvation -32.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds