Wall clock time and date at job start Mon Mar 30 2020 04:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.08999 * 109.52064 * 330.00036 * 3 2 1 5 5 C 1.53089 * 109.51997 * 90.12470 * 3 2 1 6 6 O 1.42901 * 109.41398 * 62.30166 * 5 3 2 7 7 C 1.42906 * 114.10046 * 61.15281 * 6 5 3 8 8 C 1.53095 * 109.41563 * 298.84244 * 7 6 5 9 9 C 1.53175 * 109.52046 * 209.87627 * 3 2 1 10 10 H 1.09007 * 109.54315 * 177.20674 * 9 3 2 11 11 N 1.46905 * 109.54603 * 56.94291 * 9 3 2 12 12 C 1.46898 * 110.99837 * 154.99767 * 11 9 3 13 13 C 1.53000 * 109.46907 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47156 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.47049 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99909 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00035 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00320 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99923 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47552 * 90.00237 * 19 17 15 21 21 H 1.48505 * 109.47233 * 210.00210 * 19 17 15 22 22 H 1.48497 * 109.47172 * 329.99967 * 19 17 15 23 23 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 25 25 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 26 26 H 1.08997 * 109.47421 * 182.27704 * 5 3 2 27 27 H 1.08995 * 109.48526 * 302.31399 * 5 3 2 28 28 H 1.08999 * 109.47851 * 58.82350 * 7 6 5 29 29 H 1.09000 * 109.48121 * 178.84637 * 7 6 5 30 30 H 1.08997 * 109.52044 * 177.50986 * 8 7 6 31 31 H 1.09000 * 109.52124 * 297.70063 * 8 7 6 32 32 H 1.00906 * 110.99685 * 31.04539 * 11 9 3 33 33 H 1.09003 * 109.47310 * 299.99742 * 12 11 9 34 34 H 1.08996 * 109.47271 * 59.99866 * 12 11 9 35 35 H 1.09003 * 109.46748 * 299.99871 * 13 12 11 36 36 H 1.08996 * 109.47440 * 59.99754 * 13 12 11 37 37 H 1.09003 * 109.47077 * 299.99535 * 14 13 12 38 38 H 1.08996 * 109.46950 * 59.99960 * 14 13 12 39 39 H 0.96999 * 120.00597 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3457 2.0001 -0.5137 5 6 2.2213 1.7715 1.4429 6 8 3.1371 0.8910 2.0973 7 6 4.4336 0.8471 1.4980 8 6 4.3115 0.3438 0.0572 9 6 3.3621 1.2638 -0.7192 10 1 3.7829 2.2684 -0.7630 11 7 3.1782 0.7463 -2.0817 12 6 4.2453 1.2201 -2.9732 13 6 4.0198 0.6622 -4.3799 14 6 5.1315 1.1551 -5.3083 15 6 4.9097 0.6051 -6.6938 16 1 4.0609 -0.0325 -6.8921 17 6 5.7903 0.9160 -7.7081 18 7 5.5970 0.4357 -8.9170 19 14 7.2580 2.0195 -7.3652 20 1 8.4165 1.1880 -6.9507 21 1 7.6064 2.7762 -8.5946 22 1 6.9179 2.9718 -6.2776 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 2.6270 2.7831 1.4424 27 1 1.2678 1.7623 1.9710 28 1 4.8683 1.8467 1.4982 29 1 5.0739 0.1721 2.0659 30 1 5.2935 0.3515 -0.4157 31 1 3.9146 -0.6713 0.0584 32 1 2.2690 0.9936 -2.4427 33 1 4.2325 2.3095 -3.0084 34 1 5.2103 0.8801 -2.5975 35 1 4.0323 -0.4272 -4.3450 36 1 3.0548 1.0026 -4.7554 37 1 5.1194 2.2445 -5.3433 38 1 6.0963 0.8143 -4.9327 39 1 6.2164 0.6547 -9.6307 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380250377.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:47 Heat of formation + Delta-G solvation = -125.484712 kcal Electronic energy + Delta-G solvation = -18004.374688 eV Core-core repulsion = 15138.681864 eV Total energy + Delta-G solvation = -2865.692824 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.89217 -37.92802 -37.62883 -35.57097 -33.87298 -31.84087 -31.30508 -28.29631 -27.42915 -25.07561 -24.51365 -23.27555 -21.92371 -20.93722 -18.91349 -17.64430 -17.51527 -17.20124 -16.60721 -16.43633 -16.19685 -15.88318 -15.22580 -14.99269 -14.78109 -14.71934 -14.28371 -13.81523 -13.51302 -13.38764 -13.20400 -12.72775 -12.57561 -12.29836 -12.21194 -11.89490 -11.74277 -11.50999 -11.44973 -11.41271 -11.26718 -10.99147 -10.76651 -10.07689 -9.33506 -8.29494 -6.34163 1.36127 1.38046 1.50147 2.36499 2.72677 2.95876 3.05739 3.22676 3.63239 3.86979 3.90262 4.18537 4.23215 4.28377 4.31268 4.42716 4.49817 4.50835 4.56576 4.62882 4.68117 4.74828 4.87056 4.89339 4.91474 4.97496 5.05754 5.11651 5.36933 5.51264 5.60641 5.66158 6.05354 6.19147 6.29524 6.40506 6.47495 6.74241 7.30519 8.87708 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.037924 B = 0.004284 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.132683 B = 6534.843198 C = 7036.708237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.384 6.384 3 C 0.052 3.948 4 H 0.082 0.918 5 C 0.041 3.959 6 O -0.393 6.393 7 C 0.062 3.938 8 C -0.137 4.137 9 C 0.086 3.914 10 H 0.066 0.934 11 N -0.684 5.684 12 C 0.071 3.929 13 C -0.090 4.090 14 C -0.009 4.009 15 C -0.535 4.535 16 H 0.027 0.973 17 C 0.001 3.999 18 N -0.954 5.954 19 Si 0.956 3.044 20 H -0.266 1.266 21 H -0.283 1.283 22 H -0.244 1.244 23 H 0.087 0.913 24 H 0.046 0.954 25 H 0.052 0.948 26 H 0.077 0.923 27 H 0.107 0.893 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.342 0.658 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.022 0.978 38 H 0.019 0.981 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.343 6.154 23.969 25.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.302 6.302 3 C -0.006 4.006 4 H 0.100 0.900 5 C -0.036 4.036 6 O -0.312 6.312 7 C -0.014 4.014 8 C -0.176 4.176 9 C -0.023 4.023 10 H 0.083 0.917 11 N -0.316 5.316 12 C -0.058 4.058 13 C -0.128 4.128 14 C -0.047 4.047 15 C -0.573 4.573 16 H 0.046 0.954 17 C -0.195 4.195 18 N -0.595 5.595 19 Si 0.778 3.222 20 H -0.191 1.191 21 H -0.209 1.209 22 H -0.167 1.167 23 H 0.106 0.894 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.125 0.875 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.160 0.840 33 H 0.053 0.947 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.040 0.960 38 H 0.037 0.963 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.918 5.275 24.097 25.367 hybrid contribution 0.059 1.208 -1.129 1.655 sum -5.858 6.483 22.968 24.574 Atomic orbital electron populations 1.22937 0.80343 1.03406 1.00481 1.88046 1.20408 1.26822 1.94965 1.23053 0.94590 0.86179 0.96807 0.89971 1.23191 0.94814 0.93433 0.92174 1.87916 1.22967 1.66236 1.54082 1.22702 0.84502 1.01606 0.92638 1.22113 0.99498 1.00294 0.95686 1.21757 0.94933 0.97037 0.88599 0.91668 1.60345 1.05714 1.63997 1.01513 1.21948 0.95287 0.96747 0.91817 1.21254 0.98367 0.99831 0.93383 1.19486 0.95677 0.96283 0.93277 1.21525 1.10620 1.30231 0.94940 0.95431 1.26087 1.01430 0.97529 0.94480 1.70080 1.39399 1.47318 1.02667 0.85581 0.78774 0.79436 0.78367 1.19132 1.20918 1.16744 0.89439 0.93514 0.92937 0.90469 0.87530 0.91735 0.87766 0.91119 0.92064 0.83962 0.94738 0.91275 0.93670 0.93546 0.95996 0.96295 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.82 113.37 1.23 1.64 16 2 O -0.38 -9.03 9.57 -141.81 -1.36 -10.39 16 3 C 0.05 1.00 2.29 30.68 0.07 1.07 16 4 H 0.08 1.28 7.79 -2.39 -0.02 1.26 16 5 C 0.04 0.68 6.49 72.01 0.47 1.14 16 6 O -0.39 -8.49 10.70 -141.81 -1.52 -10.00 16 7 C 0.06 1.16 6.84 72.01 0.49 1.65 16 8 C -0.14 -3.14 5.48 30.73 0.17 -2.97 16 9 C 0.09 1.92 2.37 45.08 0.11 2.03 16 10 H 0.07 1.30 7.80 -2.38 -0.02 1.28 16 11 N -0.68 -18.83 6.13 -490.72 -3.01 -21.84 16 12 C 0.07 2.19 5.49 86.30 0.47 2.66 16 13 C -0.09 -3.61 5.41 30.59 0.17 -3.45 16 14 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 15 C -0.54 -31.77 9.66 25.60 0.25 -31.52 16 16 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 17 C 0.00 0.06 5.47 84.65 0.46 0.53 16 18 N -0.95 -61.04 13.96 21.45 0.30 -60.74 16 19 Si 0.96 44.60 27.47 68.60 1.88 46.48 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.24 -10.43 6.54 99.48 0.65 -9.78 16 23 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.05 0.70 8.09 -2.39 -0.02 0.68 16 25 H 0.05 0.68 7.85 -2.38 -0.02 0.66 16 26 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.11 1.44 7.84 -2.39 -0.02 1.43 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.07 1.60 7.59 -2.39 -0.02 1.58 16 31 H 0.06 1.73 7.83 -2.39 -0.02 1.71 16 32 H 0.34 8.98 8.36 -89.69 -0.75 8.23 16 33 H 0.03 0.99 8.06 -2.39 -0.02 0.97 16 34 H 0.07 2.12 7.55 -2.39 -0.02 2.10 16 35 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 38 H 0.02 0.86 7.57 -2.39 -0.02 0.85 16 39 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -70.50 311.62 0.50 -69.99 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.20 Total: 14.04 kcal Atomic # 6 Polarization: -31.54 SS G_CDS: 4.00 Total: -27.54 kcal Atomic # 7 Polarization: -79.87 SS G_CDS: -2.71 Total: -82.58 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -2.87 Total: -20.39 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.88 Total: 46.48 kcal Total: -70.50 0.50 -69.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380250377.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.490 kcal (2) G-P(sol) polarization free energy of solvation -70.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds