Wall clock time and date at job start Mon Mar 30 2020 04:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00354 * 2 1 4 4 H 1.09005 * 109.57148 * 330.15456 * 3 2 1 5 5 C 1.53092 * 109.52344 * 90.30993 * 3 2 1 6 6 O 1.42907 * 109.41101 * 177.51752 * 5 3 2 7 7 C 1.42907 * 114.09562 * 298.83841 * 6 5 3 8 8 C 1.53087 * 109.41251 * 61.16399 * 7 6 5 9 9 C 1.53176 * 109.52259 * 209.99733 * 3 2 1 10 10 H 1.09006 * 109.61409 * 303.02311 * 9 3 2 11 11 N 1.46906 * 109.54286 * 63.24435 * 9 3 2 12 12 C 1.46902 * 110.99573 * 204.55687 * 11 9 3 13 13 C 1.53008 * 109.46622 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.46689 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.46812 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00063 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00212 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99419 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00136 * 179.97438 * 17 15 14 20 20 H 1.48491 * 109.47092 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46954 * 120.00131 * 19 17 15 22 22 H 1.48500 * 109.46901 * 239.99649 * 19 17 15 23 23 H 1.09000 * 109.47283 * 300.00763 * 1 2 3 24 24 H 1.09007 * 109.46284 * 60.00294 * 1 2 3 25 25 H 1.08996 * 109.47418 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47882 * 57.53279 * 5 3 2 27 27 H 1.09000 * 109.48903 * 297.50419 * 5 3 2 28 28 H 1.09000 * 109.47959 * 301.17647 * 7 6 5 29 29 H 1.09000 * 109.48870 * 181.14846 * 7 6 5 30 30 H 1.09005 * 109.52177 * 182.48727 * 8 7 6 31 31 H 1.08995 * 109.57715 * 62.32617 * 8 7 6 32 32 H 1.00896 * 111.00309 * 80.60099 * 11 9 3 33 33 H 1.08990 * 109.47358 * 299.99539 * 12 11 9 34 34 H 1.09004 * 109.47457 * 60.00221 * 12 11 9 35 35 H 1.09006 * 109.47203 * 299.99590 * 13 12 11 36 36 H 1.08995 * 109.47152 * 60.00028 * 13 12 11 37 37 H 1.09006 * 109.46807 * 299.99641 * 14 13 12 38 38 H 1.08995 * 109.47458 * 60.00024 * 14 13 12 39 39 H 0.96997 * 119.99459 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3451 2.0014 -0.5111 5 6 2.2256 1.7696 1.4429 6 8 2.8598 3.0503 1.4402 7 6 4.1473 3.0624 0.8202 8 6 4.0092 2.6502 -0.6476 9 6 3.3608 1.2644 -0.7218 10 1 4.0100 0.5318 -0.2421 11 7 3.1552 0.8927 -2.1281 12 6 4.3671 0.2858 -2.6946 13 6 4.1146 -0.0877 -4.1568 14 6 5.3767 -0.7204 -4.7467 15 6 5.1282 -1.0877 -6.1869 16 1 4.1663 -0.8901 -6.6364 17 6 6.1290 -1.6761 -6.9309 18 7 7.3005 -1.9163 -6.3836 19 14 5.8207 -2.1321 -8.7160 20 1 4.4326 -1.7598 -9.0894 21 1 6.7790 -1.4035 -9.5855 22 1 6.0060 -3.5949 -8.8923 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 2.8581 1.0518 1.9651 27 1 1.2630 1.8417 1.9491 28 1 4.8049 2.3615 1.3344 29 1 4.5692 4.0658 0.8778 30 1 4.9954 2.6160 -1.1107 31 1 3.3849 3.3730 -1.1728 32 1 2.8608 1.6889 -2.6733 33 1 5.1905 0.9977 -2.6381 34 1 4.6226 -0.6109 -2.1299 35 1 3.2913 -0.7999 -4.2129 36 1 3.8589 0.8086 -4.7218 37 1 6.2003 -0.0086 -4.6905 38 1 5.6320 -1.6168 -4.1816 39 1 8.0046 -2.3299 -6.9071 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380250379.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:50 Heat of formation + Delta-G solvation = -108.131642 kcal Electronic energy + Delta-G solvation = -17879.163248 eV Core-core repulsion = 15014.222909 eV Total energy + Delta-G solvation = -2864.940339 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.98786 -37.30387 -36.40140 -33.80536 -32.07525 -30.61717 -29.82263 -26.64740 -26.25425 -23.89808 -23.26788 -22.08737 -20.81806 -19.90566 -17.06770 -16.62112 -16.28921 -16.03241 -15.51680 -15.24350 -14.88780 -14.47615 -14.14907 -13.87057 -13.60234 -13.18905 -12.91455 -12.38179 -12.16154 -11.72579 -11.61742 -11.46397 -11.40743 -11.16700 -10.83646 -10.62002 -10.55939 -10.41138 -10.24133 -9.67260 -9.47051 -9.21309 -8.99359 -8.32346 -8.10858 -5.97434 -3.99230 3.32875 3.40145 3.40584 3.44865 3.87295 4.21041 4.49290 4.60439 4.67337 4.81288 4.96655 5.01036 5.17052 5.24860 5.33927 5.38161 5.38527 5.46227 5.54695 5.61617 5.68526 5.73136 5.87266 5.94780 5.97600 6.34887 6.74880 6.79388 6.81148 7.16165 7.21540 7.34719 7.64333 7.71665 7.86721 8.03367 8.46875 9.08224 9.64690 11.14142 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.036553 B = 0.004049 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.816885 B = 6913.465619 C = 7433.964022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.362 6.362 3 C 0.070 3.930 4 H 0.067 0.933 5 C 0.040 3.960 6 O -0.379 6.379 7 C 0.062 3.938 8 C -0.185 4.185 9 C 0.088 3.912 10 H 0.085 0.915 11 N -0.676 5.676 12 C 0.061 3.939 13 C -0.106 4.106 14 C 0.022 3.978 15 C -0.517 4.517 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 H 0.034 0.966 24 H 0.043 0.957 25 H 0.085 0.915 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.054 0.946 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.336 0.664 33 H 0.023 0.977 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.044 0.956 37 H 0.013 0.987 38 H 0.016 0.984 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.038 9.059 15.765 20.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.011 3.989 4 H 0.085 0.915 5 C -0.038 4.038 6 O -0.298 6.298 7 C -0.016 4.016 8 C -0.224 4.224 9 C -0.023 4.023 10 H 0.104 0.896 11 N -0.305 5.305 12 C -0.067 4.067 13 C -0.144 4.144 14 C -0.016 4.016 15 C -0.556 4.556 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.210 1.210 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.103 0.897 26 H 0.078 0.922 27 H 0.112 0.888 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.153 0.847 33 H 0.041 0.959 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.031 0.969 38 H 0.034 0.966 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.135 8.352 15.935 20.649 hybrid contribution 0.470 0.469 -1.265 1.429 sum -9.665 8.821 14.670 19.658 Atomic orbital electron populations 1.22774 0.81476 1.02669 0.99532 1.87989 1.19167 1.26170 1.94725 1.22738 0.95550 0.85664 0.94934 0.91482 1.23100 0.98506 0.85498 0.96680 1.87932 1.32434 1.30253 1.79188 1.22590 0.84841 1.02336 0.91799 1.23003 1.02858 0.98325 0.98244 1.21684 0.94558 0.94883 0.91202 0.89647 1.60550 1.35128 1.33994 1.00827 1.22150 0.89063 0.97967 0.97525 1.21619 1.01188 1.00039 0.91596 1.19071 0.91561 0.95621 0.95341 1.21301 0.98461 1.39343 0.96466 0.92636 1.25033 0.95192 0.95912 0.98410 1.69981 1.03498 1.43707 1.36468 0.86541 0.78247 0.78117 0.85141 1.19729 1.21074 1.21007 0.94720 0.93859 0.89692 0.92229 0.88848 0.92771 0.88590 0.89930 0.90693 0.84660 0.95850 0.91416 0.92517 0.93759 0.96857 0.96556 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.82 101.05 1.09 1.41 16 2 O -0.36 -4.81 10.28 -35.23 -0.36 -5.18 16 3 C 0.07 0.83 2.45 -26.59 -0.07 0.77 16 4 H 0.07 0.78 7.79 -51.93 -0.40 0.38 16 5 C 0.04 0.41 6.47 37.21 0.24 0.65 16 6 O -0.38 -4.25 10.77 -35.23 -0.38 -4.63 16 7 C 0.06 0.60 6.84 37.20 0.25 0.85 16 8 C -0.18 -1.98 5.39 -26.60 -0.14 -2.12 16 9 C 0.09 1.12 2.23 -67.53 -0.15 0.97 16 10 H 0.09 1.18 7.81 -51.93 -0.41 0.78 16 11 N -0.68 -10.18 6.18 -106.52 -0.66 -10.84 16 12 C 0.06 1.08 5.49 -3.82 -0.02 1.06 16 13 C -0.11 -2.26 5.41 -26.72 -0.14 -2.40 16 14 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 15 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 16 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 19 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 23 H 0.03 0.28 7.96 -51.93 -0.41 -0.14 16 24 H 0.04 0.42 8.09 -51.93 -0.42 0.00 16 25 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.83 7.96 -51.93 -0.41 0.42 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.90 7.55 -51.93 -0.39 0.51 16 31 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 32 H 0.34 4.71 8.44 -39.29 -0.33 4.38 16 33 H 0.02 0.40 7.51 -51.93 -0.39 0.01 16 34 H 0.07 1.25 8.06 -51.93 -0.42 0.84 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 LS Contribution 316.45 15.07 4.77 4.77 Total: -1.00 -31.55 316.45 -7.33 -38.88 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -6.93 Total: -1.19 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 0.51 Total: -12.14 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.08 Total: -37.46 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.74 Total: -9.80 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.55 -7.33 -38.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380250379.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.247 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds