Wall clock time and date at job start Mon Mar 30 2020 04:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00354 * 2 1 4 4 H 1.09005 * 109.57148 * 330.15456 * 3 2 1 5 5 C 1.53092 * 109.52344 * 90.30993 * 3 2 1 6 6 O 1.42907 * 109.41101 * 177.51752 * 5 3 2 7 7 C 1.42907 * 114.09562 * 298.83841 * 6 5 3 8 8 C 1.53087 * 109.41251 * 61.16399 * 7 6 5 9 9 C 1.53176 * 109.52259 * 209.99733 * 3 2 1 10 10 H 1.09006 * 109.61409 * 303.02311 * 9 3 2 11 11 N 1.46906 * 109.54286 * 63.24435 * 9 3 2 12 12 C 1.46902 * 110.99573 * 204.55687 * 11 9 3 13 13 C 1.53008 * 109.46622 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.46689 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.46812 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00063 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00212 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99419 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00136 * 179.97438 * 17 15 14 20 20 H 1.48491 * 109.47092 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46954 * 120.00131 * 19 17 15 22 22 H 1.48500 * 109.46901 * 239.99649 * 19 17 15 23 23 H 1.09000 * 109.47283 * 300.00763 * 1 2 3 24 24 H 1.09007 * 109.46284 * 60.00294 * 1 2 3 25 25 H 1.08996 * 109.47418 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47882 * 57.53279 * 5 3 2 27 27 H 1.09000 * 109.48903 * 297.50419 * 5 3 2 28 28 H 1.09000 * 109.47959 * 301.17647 * 7 6 5 29 29 H 1.09000 * 109.48870 * 181.14846 * 7 6 5 30 30 H 1.09005 * 109.52177 * 182.48727 * 8 7 6 31 31 H 1.08995 * 109.57715 * 62.32617 * 8 7 6 32 32 H 1.00896 * 111.00309 * 80.60099 * 11 9 3 33 33 H 1.08990 * 109.47358 * 299.99539 * 12 11 9 34 34 H 1.09004 * 109.47457 * 60.00221 * 12 11 9 35 35 H 1.09006 * 109.47203 * 299.99590 * 13 12 11 36 36 H 1.08995 * 109.47152 * 60.00028 * 13 12 11 37 37 H 1.09006 * 109.46807 * 299.99641 * 14 13 12 38 38 H 1.08995 * 109.47458 * 60.00024 * 14 13 12 39 39 H 0.96997 * 119.99459 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3451 2.0014 -0.5111 5 6 2.2256 1.7696 1.4429 6 8 2.8598 3.0503 1.4402 7 6 4.1473 3.0624 0.8202 8 6 4.0092 2.6502 -0.6476 9 6 3.3608 1.2644 -0.7218 10 1 4.0100 0.5318 -0.2421 11 7 3.1552 0.8927 -2.1281 12 6 4.3671 0.2858 -2.6946 13 6 4.1146 -0.0877 -4.1568 14 6 5.3767 -0.7204 -4.7467 15 6 5.1282 -1.0877 -6.1869 16 1 4.1663 -0.8901 -6.6364 17 6 6.1290 -1.6761 -6.9309 18 7 7.3005 -1.9163 -6.3836 19 14 5.8207 -2.1321 -8.7160 20 1 4.4326 -1.7598 -9.0894 21 1 6.7790 -1.4035 -9.5855 22 1 6.0060 -3.5949 -8.8923 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 2.8581 1.0518 1.9651 27 1 1.2630 1.8417 1.9491 28 1 4.8049 2.3615 1.3344 29 1 4.5692 4.0658 0.8778 30 1 4.9954 2.6160 -1.1107 31 1 3.3849 3.3730 -1.1728 32 1 2.8608 1.6889 -2.6733 33 1 5.1905 0.9977 -2.6381 34 1 4.6226 -0.6109 -2.1299 35 1 3.2913 -0.7999 -4.2129 36 1 3.8589 0.8086 -4.7218 37 1 6.2003 -0.0086 -4.6905 38 1 5.6320 -1.6168 -4.1816 39 1 8.0046 -2.3299 -6.9071 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380250379.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:49 Heat of formation + Delta-G solvation = -130.814742 kcal Electronic energy + Delta-G solvation = -17880.146861 eV Core-core repulsion = 15014.222909 eV Total energy + Delta-G solvation = -2865.923952 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.89026 -38.18306 -37.69882 -35.65086 -33.78722 -31.60561 -31.16668 -28.02233 -27.44178 -25.29375 -24.11594 -23.62748 -22.19084 -21.28788 -18.51053 -17.95389 -17.46269 -16.95658 -16.69843 -16.46542 -16.20572 -15.97956 -15.32076 -15.06227 -14.69081 -14.31146 -14.23734 -13.84999 -13.50078 -13.43465 -13.00657 -12.74095 -12.48631 -12.40926 -12.30873 -12.24764 -12.07998 -11.61401 -11.51189 -11.34090 -11.10681 -11.05260 -10.56368 -10.19091 -9.31901 -8.20754 -6.31788 1.39804 1.40298 1.53959 2.40790 2.59003 2.99927 3.12450 3.13971 3.71526 3.81192 3.96609 4.04826 4.14492 4.22632 4.32677 4.37813 4.48465 4.52670 4.58328 4.65425 4.72423 4.75296 4.83357 4.89357 4.93046 5.02273 5.05507 5.11939 5.23369 5.51396 5.74131 5.85077 6.00805 6.02139 6.26359 6.34850 6.49632 6.85127 7.37566 8.91505 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.036553 B = 0.004049 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.816885 B = 6913.465619 C = 7433.964022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.390 6.390 3 C 0.073 3.927 4 H 0.070 0.930 5 C 0.044 3.956 6 O -0.389 6.389 7 C 0.061 3.939 8 C -0.178 4.178 9 C 0.085 3.915 10 H 0.072 0.928 11 N -0.680 5.680 12 C 0.077 3.923 13 C -0.091 4.091 14 C 0.025 3.975 15 C -0.543 4.543 16 H 0.059 0.941 17 C -0.001 4.001 18 N -0.934 5.934 19 Si 0.966 3.034 20 H -0.262 1.262 21 H -0.276 1.276 22 H -0.278 1.278 23 H 0.056 0.944 24 H 0.042 0.958 25 H 0.091 0.909 26 H 0.059 0.941 27 H 0.110 0.890 28 H 0.059 0.941 29 H 0.115 0.885 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.343 0.657 33 H 0.028 0.972 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.052 0.948 37 H -0.007 1.007 38 H -0.011 1.011 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.124 9.912 15.750 21.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.309 6.309 3 C 0.014 3.986 4 H 0.088 0.912 5 C -0.034 4.034 6 O -0.307 6.307 7 C -0.016 4.016 8 C -0.217 4.217 9 C -0.025 4.025 10 H 0.090 0.910 11 N -0.309 5.309 12 C -0.052 4.052 13 C -0.129 4.129 14 C -0.012 4.012 15 C -0.581 4.581 16 H 0.077 0.923 17 C -0.199 4.199 18 N -0.574 5.574 19 Si 0.791 3.209 20 H -0.186 1.186 21 H -0.202 1.202 22 H -0.203 1.203 23 H 0.074 0.926 24 H 0.061 0.939 25 H 0.109 0.891 26 H 0.077 0.923 27 H 0.128 0.872 28 H 0.077 0.923 29 H 0.133 0.867 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.162 0.838 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.011 0.989 38 H 0.008 0.992 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.238 9.219 15.936 21.569 hybrid contribution 0.803 0.195 -1.220 1.474 sum -10.435 9.414 14.715 20.348 Atomic orbital electron populations 1.22933 0.79934 1.03492 1.00546 1.87949 1.21000 1.27034 1.94946 1.22734 0.94705 0.85353 0.95783 0.91211 1.23104 0.99355 0.85244 0.95667 1.87926 1.33003 1.30559 1.79245 1.22702 0.84519 1.03636 0.90764 1.22921 1.02515 0.96962 0.99312 1.21758 0.95500 0.95760 0.89525 0.91002 1.60450 1.33598 1.34758 1.02136 1.21809 0.90413 0.97885 0.95107 1.21364 0.98128 0.99630 0.93801 1.18972 0.93281 0.94281 0.94708 1.21725 0.98797 1.39784 0.97772 0.92309 1.25997 0.94798 0.95593 1.03481 1.70107 1.04507 1.44311 1.38522 0.85378 0.78648 0.77943 0.78955 1.18632 1.20197 1.20337 0.92576 0.93922 0.89079 0.92269 0.87168 0.92291 0.86654 0.90172 0.90172 0.83834 0.95397 0.92662 0.93276 0.92959 0.98887 0.99219 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.82 113.37 1.23 1.73 16 2 O -0.39 -9.98 10.28 -148.98 -1.53 -11.51 16 3 C 0.07 1.64 2.45 30.68 0.08 1.71 16 4 H 0.07 1.50 7.79 -2.38 -0.02 1.49 16 5 C 0.04 0.83 6.47 72.01 0.47 1.30 16 6 O -0.39 -7.86 10.77 -148.98 -1.60 -9.47 16 7 C 0.06 1.05 6.84 72.01 0.49 1.55 16 8 C -0.18 -3.54 5.39 30.68 0.17 -3.38 16 9 C 0.09 2.11 2.23 45.03 0.10 2.21 16 10 H 0.07 1.97 7.81 -2.38 -0.02 1.96 16 11 N -0.68 -20.02 6.18 -490.93 -3.03 -23.06 16 12 C 0.08 2.73 5.49 86.31 0.47 3.20 16 13 C -0.09 -3.90 5.41 30.60 0.17 -3.74 16 14 C 0.03 1.37 4.97 29.85 0.15 1.52 16 15 C -0.54 -31.73 9.11 25.60 0.23 -31.49 16 16 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 17 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 18 N -0.93 -57.73 13.29 21.45 0.28 -57.44 16 19 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 20 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 H 0.06 0.78 7.96 -2.39 -0.02 0.76 16 24 H 0.04 0.77 8.09 -2.38 -0.02 0.76 16 25 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 27 H 0.11 1.70 7.96 -2.39 -0.02 1.68 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.08 1.65 7.55 -2.38 -0.02 1.63 16 31 H 0.08 1.53 8.08 -2.39 -0.02 1.51 16 32 H 0.34 9.22 8.44 -89.70 -0.76 8.47 16 33 H 0.03 0.96 7.51 -2.39 -0.02 0.94 16 34 H 0.05 2.09 8.06 -2.38 -0.02 2.07 16 35 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 36 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 37 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 38 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 39 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -67.21 316.45 0.40 -66.82 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.25 Total: 12.71 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: 4.01 Total: -25.01 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -2.75 Total: -80.50 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -3.14 Total: -20.97 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -67.21 0.40 -66.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380250379.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.000 kcal (2) G-P(sol) polarization free energy of solvation -67.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds