Wall clock time and date at job start Mon Mar 30 2020 04:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46960 * 110.99813 * 2 1 4 4 C 1.53044 * 109.36652 * 183.18544 * 3 2 1 5 5 N 1.46961 * 109.36985 * 301.60274 * 4 3 2 6 6 N 1.45398 * 111.00449 * 183.18579 * 5 4 3 7 7 C 1.46897 * 111.00067 * 119.99523 * 6 5 4 8 8 C 1.52999 * 109.47150 * 179.97438 * 7 6 5 9 9 O 1.42905 * 109.46728 * 65.00694 * 8 7 6 10 10 C 1.42899 * 113.99778 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.46785 * 179.97438 * 10 9 8 12 12 H 1.07994 * 120.00689 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99662 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00357 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99656 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47441 * 59.99718 * 15 13 11 17 17 H 1.48505 * 109.46790 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46958 * 299.99305 * 15 13 11 19 19 C 1.46954 * 110.87766 * 59.31698 * 5 4 3 20 20 C 1.46955 * 111.00200 * 123.79672 * 2 1 3 21 21 H 1.09003 * 109.47363 * 59.99785 * 1 2 3 22 22 H 1.09004 * 109.46952 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47359 * 299.99435 * 1 2 3 24 24 H 1.09006 * 109.48714 * 63.22463 * 3 2 1 25 25 H 1.08995 * 109.50657 * 303.16863 * 3 2 1 26 26 H 1.09003 * 109.49403 * 181.62886 * 4 3 2 27 27 H 1.09004 * 109.50502 * 61.57964 * 4 3 2 28 28 H 1.00896 * 111.00041 * 243.95294 * 6 5 4 29 29 H 1.09000 * 109.46866 * 60.00346 * 7 6 5 30 30 H 1.08994 * 109.47299 * 300.00283 * 7 6 5 31 31 H 1.09000 * 109.47486 * 305.00632 * 8 7 6 32 32 H 1.09001 * 109.47362 * 184.99910 * 8 7 6 33 33 H 1.08997 * 109.47171 * 299.99768 * 10 9 8 34 34 H 1.08997 * 109.47442 * 59.99964 * 10 9 8 35 35 H 0.97001 * 120.00525 * 179.97438 * 14 13 11 36 36 H 1.09002 * 109.49443 * 60.64883 * 19 5 4 37 37 H 1.08999 * 109.48711 * 180.71635 * 19 5 4 38 38 H 1.08994 * 109.49156 * 296.78257 * 20 2 1 39 39 H 1.09004 * 109.48454 * 56.82962 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5233 1.3292 -0.0802 5 7 4.0501 0.5660 1.0598 6 7 5.5041 0.5661 1.0598 7 6 6.0305 1.1716 2.2903 8 6 7.5599 1.1531 2.2540 9 8 8.0213 1.9915 1.1927 10 6 9.4441 2.0455 1.0713 11 6 9.8165 2.9526 -0.0730 12 1 9.0441 3.4389 -0.6501 13 6 11.1436 3.1608 -0.3839 14 7 12.0844 2.5682 0.3185 15 14 11.6053 4.2858 -1.8019 16 1 11.0791 5.6501 -1.5430 17 1 13.0838 4.3408 -1.9289 18 1 11.0200 3.7603 -3.0615 19 6 3.5235 -0.8060 1.0597 20 6 1.9956 -0.7631 1.1401 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 1.6937 1.8774 0.9174 25 1 1.6012 1.9132 -0.8600 26 1 3.9177 2.3450 -0.0512 27 1 3.8256 0.8483 -1.0106 28 1 5.8657 -0.3673 0.9327 29 1 5.6810 0.6041 3.1528 30 1 5.6809 2.2011 2.3670 31 1 7.9071 0.1332 2.0884 32 1 7.9504 1.5203 3.2031 33 1 9.8733 2.4314 1.9959 34 1 9.8308 1.0442 0.8815 35 1 13.0180 2.7144 0.0996 36 1 3.8254 -1.3114 0.1424 37 1 3.9179 -1.3468 1.9200 38 1 1.6937 -0.2820 2.0704 39 1 1.6011 -1.7788 1.1112 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385226506.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:37 Heat of formation + Delta-G solvation = -6.192819 kcal Electronic energy + Delta-G solvation = -17637.114863 eV Core-core repulsion = 14808.887675 eV Total energy + Delta-G solvation = -2828.227188 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.169 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.20633 -36.97627 -35.64318 -32.93121 -32.14520 -31.07032 -28.73719 -27.02197 -25.70223 -23.70575 -23.23177 -22.24717 -21.31612 -19.90910 -16.91439 -16.32076 -15.85702 -15.30687 -15.28479 -15.05134 -14.93648 -14.59426 -14.34429 -14.11266 -13.24913 -13.03793 -12.69681 -12.66713 -12.25747 -11.99540 -11.86867 -11.40208 -11.28009 -11.08170 -11.05611 -10.80249 -10.70404 -10.40486 -9.95789 -9.19102 -9.04314 -8.76139 -8.60795 -8.10460 -7.94082 -6.05757 -4.06730 3.30155 3.36451 3.38441 3.43009 3.68147 4.39559 4.54764 4.80470 4.89172 4.94435 5.06666 5.16278 5.24310 5.30640 5.32452 5.33378 5.51345 5.55989 5.57809 5.66511 5.72259 5.74914 5.91908 6.03238 6.10756 6.14653 6.42111 6.69311 6.77458 6.90103 7.13989 7.20415 7.48702 7.76214 7.85889 8.22047 8.66492 9.07641 9.57917 11.05921 Molecular weight = 243.17amu Principal moments of inertia in cm(-1) A = 0.038306 B = 0.003871 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.771626 B = 7231.018223 C = 7755.378493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.057 3.943 4 C 0.070 3.930 5 N -0.385 5.385 6 N -0.514 5.514 7 C 0.079 3.921 8 C 0.065 3.935 9 O -0.381 6.381 10 C 0.194 3.806 11 C -0.511 4.511 12 H 0.066 0.934 13 C 0.055 3.945 14 N -0.901 5.901 15 Si 0.908 3.092 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.275 1.275 19 C 0.030 3.970 20 C 0.062 3.938 21 H 0.069 0.931 22 H 0.067 0.933 23 H 0.025 0.975 24 H 0.042 0.958 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.047 0.953 28 H 0.330 0.670 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.003 0.997 34 H 0.003 0.997 35 H 0.264 0.736 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.042 0.958 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.702 -6.756 2.800 21.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.072 4.072 4 C -0.058 4.058 5 N -0.200 5.200 6 N -0.236 5.236 7 C -0.051 4.051 8 C -0.014 4.014 9 O -0.301 6.301 10 C 0.120 3.880 11 C -0.550 4.550 12 H 0.085 0.915 13 C -0.146 4.146 14 N -0.541 5.541 15 Si 0.735 3.265 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.100 4.100 20 C -0.067 4.067 21 H 0.087 0.913 22 H 0.085 0.915 23 H 0.044 0.956 24 H 0.060 0.940 25 H 0.101 0.899 26 H 0.107 0.893 27 H 0.066 0.934 28 H 0.148 0.852 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.021 0.979 34 H 0.021 0.979 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.557 -6.073 2.327 21.561 hybrid contribution 0.432 -0.472 0.190 0.667 sum -20.125 -6.544 2.517 21.312 Atomic orbital electron populations 1.22337 0.87195 1.01972 1.00749 1.62165 1.07805 1.14465 1.42772 1.22255 0.94931 0.88844 1.01162 1.22067 0.92038 0.99562 0.92156 1.65340 1.00206 1.12152 1.42299 1.63825 0.96540 1.25147 1.38059 1.21927 0.93240 1.00561 0.89339 1.22259 0.92525 0.94572 0.92061 1.87964 1.25415 1.66357 1.50346 1.20178 0.75147 0.96184 0.96538 1.21037 0.91976 1.27416 1.14542 0.91541 1.24951 0.95980 0.96434 0.97207 1.69953 1.00261 1.43617 1.40223 0.86397 0.76993 0.80921 0.82161 1.20015 1.21238 1.20012 1.22621 0.94953 0.91093 1.01287 1.22103 0.94101 0.98465 0.92016 0.91251 0.91465 0.95616 0.94015 0.89923 0.89330 0.93424 0.85232 0.94456 0.89953 0.94873 0.93677 0.97942 0.97926 0.92682 0.93224 0.90559 0.94001 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.60 60.06 0.58 0.78 16 2 N -0.55 -5.64 4.97 -242.76 -1.21 -6.84 16 3 C 0.06 0.61 5.62 -3.77 -0.02 0.59 16 4 C 0.07 0.94 6.07 -3.77 -0.02 0.91 16 5 N -0.38 -5.26 4.83 -113.63 -0.55 -5.81 16 6 N -0.51 -8.14 6.70 -10.37 -0.07 -8.21 16 7 C 0.08 1.25 6.52 -3.83 -0.02 1.22 16 8 C 0.07 1.22 6.22 37.16 0.23 1.45 16 9 O -0.38 -9.45 10.27 -35.23 -0.36 -9.82 16 10 C 0.19 5.44 5.69 36.01 0.20 5.65 16 11 C -0.51 -15.43 9.43 -34.44 -0.32 -15.75 16 12 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 15 Si 0.91 22.26 29.54 -169.99 -5.02 17.24 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 19 C 0.03 0.34 5.58 -3.76 -0.02 0.32 16 20 C 0.06 0.61 5.62 -3.76 -0.02 0.59 16 21 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 23 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 24 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.33 4.89 8.14 -174.66 -1.42 3.47 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 34 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.65 8.13 -51.93 -0.42 0.22 16 LS Contribution 319.39 15.07 4.81 4.81 Total: -1.00 -32.28 319.39 -9.33 -41.61 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -8.15 Total: -3.59 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 0.48 Total: -2.72 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: -1.09 Total: -47.55 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -0.36 Total: -9.82 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.28 -9.33 -41.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385226506.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.417 kcal (2) G-P(sol) polarization free energy of solvation -32.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds