Wall clock time and date at job start Mon Mar 30 2020 04:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46960 * 110.99813 * 2 1 4 4 C 1.53044 * 109.36652 * 183.18544 * 3 2 1 5 5 N 1.46961 * 109.36985 * 301.60274 * 4 3 2 6 6 N 1.45398 * 111.00449 * 183.18579 * 5 4 3 7 7 C 1.46897 * 111.00067 * 119.99523 * 6 5 4 8 8 C 1.52999 * 109.47150 * 179.97438 * 7 6 5 9 9 O 1.42905 * 109.46728 * 65.00694 * 8 7 6 10 10 C 1.42899 * 113.99778 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.46785 * 179.97438 * 10 9 8 12 12 H 1.07994 * 120.00689 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99662 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00357 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99656 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47441 * 59.99718 * 15 13 11 17 17 H 1.48505 * 109.46790 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46958 * 299.99305 * 15 13 11 19 19 C 1.46954 * 110.87766 * 59.31698 * 5 4 3 20 20 C 1.46955 * 111.00200 * 123.79672 * 2 1 3 21 21 H 1.09003 * 109.47363 * 59.99785 * 1 2 3 22 22 H 1.09004 * 109.46952 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47359 * 299.99435 * 1 2 3 24 24 H 1.09006 * 109.48714 * 63.22463 * 3 2 1 25 25 H 1.08995 * 109.50657 * 303.16863 * 3 2 1 26 26 H 1.09003 * 109.49403 * 181.62886 * 4 3 2 27 27 H 1.09004 * 109.50502 * 61.57964 * 4 3 2 28 28 H 1.00896 * 111.00041 * 243.95294 * 6 5 4 29 29 H 1.09000 * 109.46866 * 60.00346 * 7 6 5 30 30 H 1.08994 * 109.47299 * 300.00283 * 7 6 5 31 31 H 1.09000 * 109.47486 * 305.00632 * 8 7 6 32 32 H 1.09001 * 109.47362 * 184.99910 * 8 7 6 33 33 H 1.08997 * 109.47171 * 299.99768 * 10 9 8 34 34 H 1.08997 * 109.47442 * 59.99964 * 10 9 8 35 35 H 0.97001 * 120.00525 * 179.97438 * 14 13 11 36 36 H 1.09002 * 109.49443 * 60.64883 * 19 5 4 37 37 H 1.08999 * 109.48711 * 180.71635 * 19 5 4 38 38 H 1.08994 * 109.49156 * 296.78257 * 20 2 1 39 39 H 1.09004 * 109.48454 * 56.82962 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5233 1.3292 -0.0802 5 7 4.0501 0.5660 1.0598 6 7 5.5041 0.5661 1.0598 7 6 6.0305 1.1716 2.2903 8 6 7.5599 1.1531 2.2540 9 8 8.0213 1.9915 1.1927 10 6 9.4441 2.0455 1.0713 11 6 9.8165 2.9526 -0.0730 12 1 9.0441 3.4389 -0.6501 13 6 11.1436 3.1608 -0.3839 14 7 12.0844 2.5682 0.3185 15 14 11.6053 4.2858 -1.8019 16 1 11.0791 5.6501 -1.5430 17 1 13.0838 4.3408 -1.9289 18 1 11.0200 3.7603 -3.0615 19 6 3.5235 -0.8060 1.0597 20 6 1.9956 -0.7631 1.1401 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 1.6937 1.8774 0.9174 25 1 1.6012 1.9132 -0.8600 26 1 3.9177 2.3450 -0.0512 27 1 3.8256 0.8483 -1.0106 28 1 5.8657 -0.3673 0.9327 29 1 5.6810 0.6041 3.1528 30 1 5.6809 2.2011 2.3670 31 1 7.9071 0.1332 2.0884 32 1 7.9504 1.5203 3.2031 33 1 9.8733 2.4314 1.9959 34 1 9.8308 1.0442 0.8815 35 1 13.0180 2.7144 0.0996 36 1 3.8254 -1.3114 0.1424 37 1 3.9179 -1.3468 1.9200 38 1 1.6937 -0.2820 2.0704 39 1 1.6011 -1.7788 1.1112 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385226506.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:37 Heat of formation + Delta-G solvation = -30.937340 kcal Electronic energy + Delta-G solvation = -17638.187866 eV Core-core repulsion = 14808.887675 eV Total energy + Delta-G solvation = -2829.300191 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.12564 -38.69723 -36.83766 -34.96994 -33.55893 -31.96669 -30.14564 -28.82591 -26.88302 -24.59458 -24.49366 -24.12470 -22.71104 -20.82827 -18.63723 -17.92127 -17.53187 -16.69305 -16.52662 -16.15264 -16.01459 -15.82417 -15.62542 -15.49768 -14.80563 -14.41283 -14.11097 -13.70749 -13.49310 -13.13924 -13.01476 -12.86709 -12.71588 -12.63768 -12.35706 -12.29663 -12.06961 -11.93789 -11.66733 -11.27004 -10.85498 -10.30462 -10.19120 -9.37908 -9.08471 -8.31060 -6.43040 1.40176 1.45299 1.53604 2.19895 2.35936 2.93490 3.02518 3.21648 3.63118 4.01742 4.07516 4.17163 4.23551 4.26715 4.31063 4.41095 4.52329 4.57640 4.62190 4.65381 4.70063 4.78296 4.85740 4.87738 4.95940 5.01391 5.02802 5.08911 5.20849 5.56091 5.73793 5.95957 5.99466 6.02830 6.08055 6.56723 6.63651 6.86470 7.29084 8.81102 Molecular weight = 243.17amu Principal moments of inertia in cm(-1) A = 0.038306 B = 0.003871 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.771626 B = 7231.018223 C = 7755.378493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.561 5.561 3 C 0.066 3.934 4 C 0.071 3.929 5 N -0.385 5.385 6 N -0.538 5.538 7 C 0.093 3.907 8 C 0.057 3.943 9 O -0.398 6.398 10 C 0.209 3.791 11 C -0.548 4.548 12 H 0.059 0.941 13 C 0.006 3.994 14 N -0.931 5.931 15 Si 0.983 3.017 16 H -0.265 1.265 17 H -0.274 1.274 18 H -0.266 1.266 19 C 0.030 3.970 20 C 0.066 3.934 21 H 0.075 0.925 22 H 0.079 0.921 23 H 0.030 0.970 24 H 0.041 0.959 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.031 0.969 28 H 0.333 0.667 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.056 0.944 33 H -0.014 1.014 34 H -0.016 1.016 35 H 0.271 0.729 36 H 0.040 0.960 37 H 0.089 0.911 38 H 0.042 0.958 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.925 -6.840 2.461 23.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.286 5.286 3 C -0.063 4.063 4 C -0.058 4.058 5 N -0.201 5.201 6 N -0.260 5.260 7 C -0.036 4.036 8 C -0.021 4.021 9 O -0.318 6.318 10 C 0.134 3.866 11 C -0.586 4.586 12 H 0.078 0.922 13 C -0.192 4.192 14 N -0.571 5.571 15 Si 0.805 3.195 16 H -0.190 1.190 17 H -0.199 1.199 18 H -0.191 1.191 19 C -0.099 4.099 20 C -0.063 4.063 21 H 0.094 0.906 22 H 0.098 0.902 23 H 0.048 0.952 24 H 0.060 0.940 25 H 0.113 0.887 26 H 0.090 0.910 27 H 0.049 0.951 28 H 0.152 0.848 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.003 0.997 34 H 0.002 0.998 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.107 0.893 38 H 0.060 0.940 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -21.804 -6.175 2.005 22.750 hybrid contribution 0.752 -0.523 0.349 0.980 sum -21.052 -6.698 2.354 22.217 Atomic orbital electron populations 1.22389 0.85453 1.02991 1.01285 1.62177 1.09424 1.13917 1.43129 1.22153 0.92828 0.89624 1.01722 1.22059 0.94004 0.98393 0.91376 1.65360 0.98658 1.13758 1.42286 1.63732 0.98394 1.25621 1.38267 1.21730 0.90805 1.00455 0.90638 1.22589 0.94646 0.94070 0.90811 1.87918 1.23250 1.67894 1.52746 1.19796 0.76944 0.94619 0.95263 1.21371 0.92701 1.28764 1.15754 0.92239 1.25959 0.95506 0.97729 1.00025 1.70057 1.00865 1.44471 1.41671 0.85244 0.77232 0.78726 0.78262 1.18975 1.19863 1.19131 1.22710 0.96191 0.89606 1.01391 1.22120 0.92756 0.99566 0.91858 0.90594 0.90236 0.95184 0.94034 0.88677 0.91040 0.95098 0.84828 0.91416 0.91168 0.93996 0.92625 0.99660 0.99816 0.92039 0.94134 0.89289 0.94001 0.88249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.60 127.69 1.23 1.58 16 2 N -0.56 -10.52 4.97 -921.94 -4.58 -15.10 16 3 C 0.07 1.34 5.62 86.31 0.49 1.83 16 4 C 0.07 1.88 6.07 86.31 0.52 2.40 16 5 N -0.39 -10.29 4.83 -513.42 -2.48 -12.77 16 6 N -0.54 -16.93 6.70 -186.73 -1.25 -18.18 16 7 C 0.09 2.88 6.52 86.30 0.56 3.45 16 8 C 0.06 2.15 6.22 71.98 0.45 2.60 16 9 O -0.40 -20.19 10.27 -148.98 -1.53 -21.72 16 10 C 0.21 12.09 5.69 71.24 0.41 12.49 16 11 C -0.55 -33.70 9.43 25.60 0.24 -33.46 16 12 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 13 C 0.01 0.36 5.46 84.66 0.46 0.82 16 14 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 15 Si 0.98 45.37 29.54 68.60 2.03 47.40 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 19 C 0.03 0.64 5.58 86.31 0.48 1.12 16 20 C 0.07 1.15 5.62 86.31 0.49 1.64 16 21 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.08 0.86 8.13 -2.38 -0.02 0.84 16 23 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 24 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 25 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.33 9.80 8.14 -204.85 -1.67 8.13 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 34 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 35 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 36 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.10 1.34 8.13 -2.38 -0.02 1.32 16 Total: -1.00 -69.20 319.39 -2.88 -72.08 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -0.67 Total: 10.52 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: 5.32 Total: -5.54 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -8.03 Total: -102.74 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -1.53 Total: -21.72 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -69.20 -2.88 -72.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385226506.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.144 kcal (2) G-P(sol) polarization free energy of solvation -69.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds